Clone LD15586 Report

Search the DGRC for LD15586

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:155
Well:86
Vector:pBS SK-
Associated Gene/Transcriptl(2)k09913-RA
Protein status:LD15586.pep: gold
Preliminary Size:2085
Sequenced Size:1981

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3082 2001-01-01 Release 2 assignment
CG3082 2001-10-10 Blastp of sequenced clone
CG3082 2003-01-01 Sim4 clustering to Release 3
l(2)k09913 2008-04-29 Release 5.5 accounting
l(2)k09913 2008-08-15 Release 5.9 accounting
l(2)k09913 2008-12-18 5.12 accounting

Clone Sequence Records

LD15586.complete Sequence

1981 bp (1981 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061202

> LD15586.complete
CGGAATTGAATTTATTTGCAAACAAAAATCGAAACACGGGAGCTCGACGT
TAGCGTAAGTGTTACGGCCACCGATTCAGCTGCTGGCCAATTAAAATATC
ATCGATGTTGCACACAGATACGCCGCACAGACACTCACGCACACACGCAC
CGCCTGGGAGCAAGATTCGAGCCCAGAATCTCAATTTGATCAATTTAGCA
TTCTGGCCATTTGACAATACAAATTGAGACTCGTCTGCACTGGGTACAAA
GTTCAGTCCGTGTGCATTGGCCTGTGCCTGTGTGCGTGCATTCGGGCGTG
TGTGCCTGTGTGAGTCTGTGTGTGCAGTACGCAAATGAGAGGAGAAAAAG
CAAGAAACCACTGCCAATCATTTTTCAGTCTGTGTCCAAAGCGCTTGTGT
GAAAGTATTCTGATTCGCCCGCCCGCCCGTGAAAGTGTTTTCTGCAATTT
TCCGCATCCGCATTCGCATCACAATGGCTGCGCACTTTTTTCGCACTGCA
TTTTACGCAACGGCGGCCAGAAAATCGATGAGTCTGCCCTTCGCCGGCCG
GACAGCCGCAACTCTAGCCGTGGGCCTATCATTCGGTGCGCAAAATAGCC
GGGCAGCCGTGCCGTACGAGAATGCCTACGCGGACAGCTTCTTCGGGGGC
TGCCAGACGCAGGGACTGCTCCAGCGGATTCCCCAGACCGGATACATCCA
GCCCCCGCTGATGCGGAACTTCTCGAGCCTGCAGACGGGCCACCAGCAGC
AGCAGCAGCCGGCTCCAAATAGTGCCATGGCGCCGTCGAACAATCGCCGG
TACTTATCCTCGCAGGATATTACCAAGAACATGACCCTGTACACCAGCAC
CAAGACCCAAGTTGAGGTGGATCCCAAGACGCTGGCCTTCAAGAAGCCCA
CTGGCAACCCACTGGTTCTCATGATGGCCTGGCTGATGGCCAAGCAGAAG
CATCTGAAGAAGTATGCCCAGATCTACACTGAGATGGGATTCGATGTGGT
GGTGGTGCACATTACGCCGTGGCAGCTACTCTGGCCGGTCAAAGGATCCC
AGGTGGTGGCCGCCGAGACTATTCGATTCCTGGAGAACAACAAGTCGTAC
GAACCCATTGTGATGCATGGCTTCTCCGTGGGCGCCTACCAGCTGGGCGA
GATCATGCTGCAGATGTCGCGCGACATGGATCGCTATGGTAGCATTCTGG
ACCGCTTCGTGTGCCAGGTGTGGGACAGCGCCGCCGACATCACCGAGATC
CCGGTGGGCGTGCCCAAGTCGATCTTCCCGAGGAACGAGCGAATGCAGAG
CGCCCTGCGCAACTATACGCTGTACCACCTGAAGACATTCCACAACCAGG
CCACCATCCACTACATGCGCTCCAGCCAGATGTTCCACTCCACGCTGCTC
AAGGCCCCGGCGCTGTTCTTCGTGTCCGACAACGATCCCATCGGTCCGCC
GTCCTCCAACCAGTCCGTTCGCGAGGACTGGGAGCGTGCGAACATCAAGG
TTACCTTCAAGTGCTGGGAGCGGTCCCAGCACGCCGCCCACTATATACGG
CATCGCGAGGAGTACCTGCAGACGCTGTTCCAGCATCTGGAGACCTGCGG
TGTCTTGGAGGCCATCGGCGTGCCGAAGCGCGCCAAGTTGTAGGTGTCTC
TAACGAGGAGCGGCTGATCAGTTCAGTGATATACATTTATTCAAGAATCA
ATGCGATTATGATTTTACCCTAGTTGCTAAGACCTAAAGATTAACGAGCA
ATGTAAAACCAATGTCCTCTTTGAATGATTATGATCTGTGTGTCTCTCGC
GAGGCAGAATCTTCAAAAGCCCGCACGGGAAATTCCTAGGCTAAGCTTAA
AGTCGTATTTCATCAACCGAGAGAAGAATGCACTACGCCTCTATATTGTT
ACATATATTTTGAGATCGCTGCAAAACAGCTAAATAAAGTAATTTAAATG
ATACGAACACATTAAAAAAAAAAAAAAAAAA

LD15586.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-RC 2029 l(2)k09913-RC 61..2026 1..1966 9830 100 Plus
l(2)k09913-RA 1915 l(2)k09913-RA 70..1915 118..1963 9230 100 Plus
l(2)k09913.d 1810 l(2)k09913.d 429..1807 588..1966 6895 100 Plus
l(2)k09913.d 1810 l(2)k09913.d 115..324 379..588 1050 100 Plus
l(2)k09913-RA 1915 l(2)k09913-RA 16..69 1..54 270 100 Plus
l(2)k09913.d 1810 l(2)k09913.d 61..114 1..54 270 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18957416..18958330 1049..1963 4545 99.8 Plus
chr2R 21145070 chr2R 18953718..18954305 1..588 2910 99.7 Plus
chr2R 21145070 chr2R 18957072..18957355 771..1054 1360 98.6 Plus
chr2R 21145070 chr2R 18954410..18954592 588..770 915 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:03:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23070961..23071878 1049..1966 4590 100 Plus
2R 25286936 2R 23067254..23067841 1..588 2940 100 Plus
2R 25286936 2R 23070607..23070900 771..1064 1425 99 Plus
2R 25286936 2R 23067946..23068128 588..770 915 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23072160..23073077 1049..1966 4590 100 Plus
2R 25260384 2R 23068453..23069040 1..588 2940 100 Plus
2R 25260384 2R 23071806..23072099 771..1064 1425 98.9 Plus
2R 25260384 2R 23069145..23069327 588..770 915 100 Plus
Blast to na_te.dros performed 2019-03-15 18:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1b 5171 Rt1b RT1B 5150bp 4171..4239 1305..1372 126 66.7 Plus
gypsy6 7826 gypsy6 GYPSY6 7826bp 7000..7097 1284..1378 113 60.2 Plus

LD15586.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:24:25 Download gff for LD15586.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18953718..18953990 1..273 99 == Plus
chr2R 18954043..18954305 326..588 100 -> Plus
chr2R 18954411..18954592 589..770 100 -> Plus
chr2R 18957072..18957353 771..1052 98 -> Plus
chr2R 18957420..18958330 1053..1963 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:50:15 Download gff for LD15586.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RC 1..1170 474..1643 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:46:04 Download gff for LD15586.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RC 1..1170 474..1643 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:01:40 Download gff for LD15586.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RA 1..1170 474..1643 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:15:10 Download gff for LD15586.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RC 1..1170 474..1643 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:57 Download gff for LD15586.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RA 1..1170 474..1643 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:29:55 Download gff for LD15586.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RC 1..1963 1..1963 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:46:04 Download gff for LD15586.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RC 1..1963 1..1963 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:01:40 Download gff for LD15586.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RC 1..1944 20..1963 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:15:11 Download gff for LD15586.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RC 1..1963 1..1963 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:57 Download gff for LD15586.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RC 1..1944 20..1963 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:25 Download gff for LD15586.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23067254..23067841 1..588 100 -> Plus
2R 23067947..23068128 589..770 100 -> Plus
2R 23070607..23070888 771..1052 100 -> Plus
2R 23070965..23071875 1053..1963 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:25 Download gff for LD15586.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23067254..23067841 1..588 100 -> Plus
2R 23067947..23068128 589..770 100 -> Plus
2R 23070607..23070888 771..1052 100 -> Plus
2R 23070965..23071875 1053..1963 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:25 Download gff for LD15586.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23067254..23067841 1..588 100 -> Plus
2R 23067947..23068128 589..770 100 -> Plus
2R 23070607..23070888 771..1052 100 -> Plus
2R 23070965..23071875 1053..1963 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:01:40 Download gff for LD15586.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18954777..18955364 1..588 100 -> Plus
arm_2R 18955470..18955651 589..770 100 -> Plus
arm_2R 18958130..18958411 771..1052 100 -> Plus
arm_2R 18958488..18959398 1053..1963 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:51:37 Download gff for LD15586.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23068471..23069058 1..588 100 -> Plus
2R 23069164..23069345 589..770 100 -> Plus
2R 23071824..23072105 771..1052 100 -> Plus
2R 23072182..23073092 1053..1963 100   Plus

LD15586.hyp Sequence

Translation from 473 to 1642

> LD15586.hyp
MAAHFFRTAFYATAARKSMSLPFAGRTAATLAVGLSFGAQNSRAAVPYEN
AYADSFFGGCQTQGLLQRIPQTGYIQPPLMRNFSSLQTGHQQQQQPAPNS
AMAPSNNRRYLSSQDITKNMTLYTSTKTQVEVDPKTLAFKKPTGNPLVLM
MAWLMAKQKHLKKYAQIYTEMGFDVVVVHITPWQLLWPVKGSQVVAAETI
RFLENNKSYEPIVMHGFSVGAYQLGEIMLQMSRDMDRYGSILDRFVCQVW
DSAADITEIPVGVPKSIFPRNERMQSALRNYTLYHLKTFHNQATIHYMRS
SQMFHSTLLKAPALFFVSDNDPIGPPSSNQSVREDWERANIKVTFKCWER
SQHAAHYIRHREEYLQTLFQHLETCGVLEAIGVPKRAKL*

LD15586.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-PE 389 CG3082-PE 1..389 1..389 2044 100 Plus
l(2)k09913-PC 389 CG3082-PC 1..389 1..389 2044 100 Plus
l(2)k09913-PA 389 CG3082-PA 1..389 1..389 2044 100 Plus
l(2)k09913-PB 389 CG3082-PB 1..389 1..389 2044 100 Plus
l(2)k09913-PF 388 CG3082-PF 1..388 1..389 2026 99.7 Plus

LD15586.pep Sequence

Translation from 473 to 1642

> LD15586.pep
MAAHFFRTAFYATAARKSMSLPFAGRTAATLAVGLSFGAQNSRAAVPYEN
AYADSFFGGCQTQGLLQRIPQTGYIQPPLMRNFSSLQTGHQQQQQPAPNS
AMAPSNNRRYLSSQDITKNMTLYTSTKTQVEVDPKTLAFKKPTGNPLVLM
MAWLMAKQKHLKKYAQIYTEMGFDVVVVHITPWQLLWPVKGSQVVAAETI
RFLENNKSYEPIVMHGFSVGAYQLGEIMLQMSRDMDRYGSILDRFVCQVW
DSAADITEIPVGVPKSIFPRNERMQSALRNYTLYHLKTFHNQATIHYMRS
SQMFHSTLLKAPALFFVSDNDPIGPPSSNQSVREDWERANIKVTFKCWER
SQHAAHYIRHREEYLQTLFQHLETCGVLEAIGVPKRAKL*

LD15586.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13561-PA 417 GF13561-PA 1..417 1..389 1833 83.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\l(2)k09913-PA 388 GG22823-PA 1..388 1..389 1991 94.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20830-PA 389 GH20830-PA 1..389 1..389 1716 80.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-PE 389 CG3082-PE 1..389 1..389 2044 100 Plus
l(2)k09913-PC 389 CG3082-PC 1..389 1..389 2044 100 Plus
l(2)k09913-PA 389 CG3082-PA 1..389 1..389 2044 100 Plus
l(2)k09913-PB 389 CG3082-PB 1..389 1..389 2044 100 Plus
l(2)k09913-PF 388 CG3082-PF 1..388 1..389 2026 99.7 Plus
l(2)k09913-PD 316 CG3082-PD 24..316 97..389 1533 99.3 Plus
l(2)k09913-PI 288 CG3082-PI 1..288 102..389 1522 100 Plus
l(2)k09913-PH 288 CG3082-PH 1..288 102..389 1522 100 Plus
l(2)k09913-PG 288 CG3082-PG 1..288 102..389 1522 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20930-PA 394 GI20930-PA 1..394 1..389 1721 81 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11302-PA 417 GL11302-PA 1..417 1..389 1783 80.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15913-PA 417 GA15913-PA 1..417 1..389 1783 80.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15981-PA 389 GM15981-PA 1..389 1..389 2105 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11735-PA 336 GD11735-PA 1..336 80..389 1647 91.1 Plus
Dsim\GD11734-PA 72 GD11734-PA 1..72 1..72 374 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20657-PA 394 GJ20657-PA 1..394 1..389 1740 81.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19549-PA 392 GK19549-PA 1..392 1..389 1716 81.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\l(2)k09913-PA 388 GE14258-PA 1..388 1..389 2057 96.4 Plus