Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LD15658.complete Sequence
2278 bp (2278 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061207
> LD15658.complete
CGCACTTATAATCACATTAACCATGAACCCGTACAATAAGTTTCAAGATA
TGGTTTTAAAGCAATGGTTGGTCATGGATGATGCACTTTTCCAAGCATGT
GGGTTTTGTCTAGTTGCGGCATCTGATGACCAGTCGGTGTTTATCACTTG
GGACAAGTATTATTTGCTAAACATACGCTTTAAGATGCCAGAGGACAGCT
GCAGGATAAAAATGACTGCTGTGCGAATTCCTGTGCCTAAAAGTGGAGGA
GGCTATATTAGGAGTGTGCATGCTTTGAGGTACAATACGATTCTGCATAT
GTCGAATGGGGAGTTATACAGCTTTACCTCATTTAAGGCCCTGAATCTTA
TAAAATGGCTCAATGCAGTTCGTTGTTTAGCTATAGTCGATGTGGGATTC
AGCGTGATTCGAATAGAGAATCGCCGACTGCTGCTGCAGACGTATGTTGA
TCTTCCTGATTGGGAAAAGGACAAGTGTACACTGCAACATTCATTTGACA
TAACTTTTGACCAGGAGAACATATTTCAGAGCGACTGGCAGCATAACGAA
TACACTCTGACAACTTTAAAAGTGACCGAAAAGGAAGAAGAGTTCGCACG
AACTCTTTTCGGCACAAGAGCGGCAGAACAAAATTATATTCACATATTCA
GCATAGGTGGACATGTATTTGCGTTGGCTTATAATTACAAAACAACATCA
GATAGTACCGGTCCTGACTATAATATCGAGCTCCTGTGCATTTATGCAGC
GCACGTTAAATTCATTAAACTGCTACCAATGGAGAACCTTTGTTTGATTT
TTCTCGGCTCTGGCAGTATAGACATGTGGTACACGTCCAGGCTCCTTTCT
ATAAAACAGCGTCAAATTTTTCACACAGGTGCTGAATGGCTGGACTACGA
TGCAACAAGTGCCAATGGCGACGTCTATTACACAGACGGGAACCAGCTAG
TGCGACTGCGATTCAAATACAACGCCCAGCTTGACGAGTGTTTTGTCTAC
ACCTTGACGAAGCCAGTCTCCGGGATATACGCATGCTGTTGGATAGACCA
AAAAGAAGAATTGTTCTGCCTGAGCGACAACAACACACTTTATTGCATTT
CTTTTGGGATGTCCGAAATGAACGATCAAACGCTGAGAATTTCAACGCCG
AACTTTGCACCATCAGCTTTGATGAGACTGCAGCACAATGCCGAAGCCTT
GCAGGAATATAAAAAACATCCTGATTCACTAAGGCAAAAATTATATAGGG
AGTATAAGCAACAGCAGCTTATATCTATGAGTAAAAATATCCGGAGAGTA
AATGCGGCCATTAAAACCTCACTGGAATACCACCTTCAAGTACCTATTGA
TATTGTCAGGGATAATGTTCTTCTACAGGCAGCGCAGAGTCTAGATCTTG
ATCAGAAAAGCTGTATATACGCTGTGCTTAACGTCAGACTTATCGATAGC
CGGCCCCTATTGCAGGGGACATTTTGGAAGCTTTTGATATGCTATGACAA
CCGCATCAATGTCCTCCTACTGCCCACAGAAGTACTTGTTAATAAAAAAT
GTTGCGTGGTTATAGCGTTAAGTAAAATGAAAAACGAGCATCTGCCTCAT
TTTAAAATCCAGCTTCTGCAACTTGTGGAACTTAATGAGCAATCATGTGC
TGTACTTTTTCAGGTACCGGTAGAAAGTTGTGGAAATACATTCCGAGCAA
TTTTCAGTGGAAGAATAGTACCTGCGAAATACAGGTTGAACAATAAGCAA
TTTATGGAAAGGAAACCAAGTATACCAAAAATCAGGCAGGTCAGCAGTCT
TGGAAGTCAATTCACTTTTCCCAATATAGCGGATCTATTTTGCAATGCCG
TCTCCATTCACAATGACTATTGTAAATTGCATTTTATAAACGAAAAGTTG
CAATTCCATTTAAATGGAATGTTGGAAAGTAAAGATGCTTCAGCGATTTA
CTATTTTAAGCAACATATTATTCTAAACTCGGATCAACTGGAATCTGCAT
CCAAAAATTATGACATGACCTTTCATACAATAATGAGCGACGTTGACCGA
TTTCGGTACCGACAATGTAACGACATCTTGGCCCCTGGAACAAATTTTTC
CGTTTTAAAGTCAAAATATAATATCATTAGAAATGACATTCATTAAGAAT
TTTGCGTACATCGAAACTATTCAATAACCTTTTACGCTCACTTTTCTTAT
TTATACCCTATAGTTAGATAAACTAAATCTAAATCTAATAAACTAAATCT
AATCTAAAAAAAAAAAAAAAAAAAAAAA
LD15658.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490.a | 1819 | CG17490.a | 458..1057 | 1658..2257 | 2985 | 99.8 | Plus |
CG17490-RA | 1518 | CG17490-RA | 458..1057 | 1658..2257 | 2985 | 99.8 | Plus |
CG17490-RC | 1381 | CG17490-RC | 112..486 | 1663..2037 | 1875 | 100 | Plus |
CG17490.a | 1819 | CG17490.a | 185..467 | 1..283 | 1415 | 100 | Plus |
CG17490-RA | 1518 | CG17490-RA | 185..467 | 1..283 | 1415 | 100 | Plus |
CG17490-RC | 1381 | CG17490-RC | 47..114 | 1..68 | 340 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 22429531..22431565 | 1..2035 | 10160 | 100 | Plus |
chr2L | 23010047 | chr2L | 22431618..22431838 | 2035..2255 | 1105 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:03:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22538290..22540324 | 1..2035 | 10175 | 100 | Plus |
2L | 23513712 | 2L | 22540377..22540599 | 2035..2257 | 1115 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22538290..22540324 | 1..2035 | 10175 | 100 | Plus |
2L | 23513712 | 2L | 22540377..22540599 | 2035..2257 | 1115 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 15:17:33 has no hits.
LD15658.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:18:11 Download gff for
LD15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 22431619..22431838 | 2036..2255 | 100 | | Plus |
chr2L | 22429531..22431565 | 1..2035 | 99 | -> | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:46:07 Download gff for
LD15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RE | 1..2124 | 23..2146 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:34:02 Download gff for
LD15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RE | 1..2124 | 23..2146 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:53 Download gff for
LD15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RB | 1..2145 | 2..2146 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:43:26 Download gff for
LD15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RE | 1..2124 | 23..2146 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:29:30 Download gff for
LD15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RB | 1..2255 | 1..2255 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:46:07 Download gff for
LD15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RE | 1..2255 | 1..2255 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:02 Download gff for
LD15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RE | 61..2315 | 1..2255 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:53 Download gff for
LD15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RB | 1..2255 | 1..2255 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:43:26 Download gff for
LD15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RE | 61..2315 | 1..2255 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:18:11 Download gff for
LD15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22540378..22540597 | 2036..2255 | 100 | | Plus |
2L | 22538290..22540324 | 1..2035 | 100 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:18:11 Download gff for
LD15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22540378..22540597 | 2036..2255 | 100 | | Plus |
2L | 22538290..22540324 | 1..2035 | 100 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:18:11 Download gff for
LD15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22540378..22540597 | 2036..2255 | 100 | | Plus |
2L | 22538290..22540324 | 1..2035 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:02 Download gff for
LD15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22431022..22433056 | 1..2035 | 100 | -> | Plus |
arm_2L | 22433110..22433329 | 2036..2255 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:51:40 Download gff for
LD15658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22538290..22540324 | 1..2035 | 100 | -> | Plus |
2L | 22540378..22540597 | 2036..2255 | 100 | | Plus |
LD15658.hyp Sequence
Translation from 0 to 2145
> LD15658.hyp
ALIITLTMNPYNKFQDMVLKQWLVMDDALFQACGFCLVAASDDQSVFITW
DKYYLLNIRFKMPEDSCRIKMTAVRIPVPKSGGGYIRSVHALRYNTILHM
SNGELYSFTSFKALNLIKWLNAVRCLAIVDVGFSVIRIENRRLLLQTYVD
LPDWEKDKCTLQHSFDITFDQENIFQSDWQHNEYTLTTLKVTEKEEEFAR
TLFGTRAAEQNYIHIFSIGGHVFALAYNYKTTSDSTGPDYNIELLCIYAA
HVKFIKLLPMENLCLIFLGSGSIDMWYTSRLLSIKQRQIFHTGAEWLDYD
ATSANGDVYYTDGNQLVRLRFKYNAQLDECFVYTLTKPVSGIYACCWIDQ
KEELFCLSDNNTLYCISFGMSEMNDQTLRISTPNFAPSALMRLQHNAEAL
QEYKKHPDSLRQKLYREYKQQQLISMSKNIRRVNAAIKTSLEYHLQVPID
IVRDNVLLQAAQSLDLDQKSCIYAVLNVRLIDSRPLLQGTFWKLLICYDN
RINVLLLPTEVLVNKKCCVVIALSKMKNEHLPHFKIQLLQLVELNEQSCA
VLFQVPVESCGNTFRAIFSGRIVPAKYRLNNKQFMERKPSIPKIRQVSSL
GSQFTFPNIADLFCNAVSIHNDYCKLHFINEKLQFHLNGMLESKDASAIY
YFKQHIILNSDQLESASKNYDMTFHTIMSDVDRFRYRQCNDILAPGTNFS
VLKSKYNIIRNDIH*
LD15658.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:25:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-PG | 707 | CG17490-PG | 1..707 | 8..714 | 3727 | 100 | Plus |
CG17490-PE | 707 | CG17490-PE | 1..707 | 8..714 | 3727 | 100 | Plus |
CG17490-PF | 130 | CG17490-PF | 1..130 | 585..714 | 686 | 100 | Plus |
CG17490-PA | 130 | CG17490-PA | 1..130 | 585..714 | 686 | 100 | Plus |
CG17490-PC | 134 | CG17490-PC | 2..125 | 555..678 | 652 | 100 | Plus |
LD15658.pep Sequence
Translation from 22 to 2145
> LD15658.pep
MNPYNKFQDMVLKQWLVMDDALFQACGFCLVAASDDQSVFITWDKYYLLN
IRFKMPEDSCRIKMTAVRIPVPKSGGGYIRSVHALRYNTILHMSNGELYS
FTSFKALNLIKWLNAVRCLAIVDVGFSVIRIENRRLLLQTYVDLPDWEKD
KCTLQHSFDITFDQENIFQSDWQHNEYTLTTLKVTEKEEEFARTLFGTRA
AEQNYIHIFSIGGHVFALAYNYKTTSDSTGPDYNIELLCIYAAHVKFIKL
LPMENLCLIFLGSGSIDMWYTSRLLSIKQRQIFHTGAEWLDYDATSANGD
VYYTDGNQLVRLRFKYNAQLDECFVYTLTKPVSGIYACCWIDQKEELFCL
SDNNTLYCISFGMSEMNDQTLRISTPNFAPSALMRLQHNAEALQEYKKHP
DSLRQKLYREYKQQQLISMSKNIRRVNAAIKTSLEYHLQVPIDIVRDNVL
LQAAQSLDLDQKSCIYAVLNVRLIDSRPLLQGTFWKLLICYDNRINVLLL
PTEVLVNKKCCVVIALSKMKNEHLPHFKIQLLQLVELNEQSCAVLFQVPV
ESCGNTFRAIFSGRIVPAKYRLNNKQFMERKPSIPKIRQVSSLGSQFTFP
NIADLFCNAVSIHNDYCKLHFINEKLQFHLNGMLESKDASAIYYFKQHII
LNSDQLESASKNYDMTFHTIMSDVDRFRYRQCNDILAPGTNFSVLKSKYN
IIRNDIH*
LD15658.pep Blast Records
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH13292-PA | 858 | GH13292-PA | 21..557 | 15..546 | 1211 | 43.8 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-PG | 707 | CG17490-PG | 1..707 | 1..707 | 3727 | 100 | Plus |
CG17490-PE | 707 | CG17490-PE | 1..707 | 1..707 | 3727 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI17484-PA | 756 | GI17484-PA | 20..455 | 15..442 | 1098 | 46.3 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:59:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL20462-PA | 692 | GL20462-PA | 20..674 | 13..656 | 1505 | 46 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:59:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA30044-PA | 692 | GA30044-PA | 20..674 | 13..656 | 1522 | 46.5 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:59:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM26731-PA | 707 | GM26731-PA | 1..707 | 1..707 | 3447 | 89.7 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:59:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD17705-PA | 707 | GD17705-PA | 1..707 | 1..707 | 3443 | 89.7 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:59:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ15046-PA | 992 | GJ15046-PA | 21..677 | 15..654 | 1371 | 42.4 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK23710-PA | 754 | GK23710-PA | 42..754 | 15..707 | 1353 | 39.9 | Plus |