Clone LD15658 Report

Search the DGRC for LD15658

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:156
Well:58
Vector:pBS SK-
Associated Gene/TranscriptCG17490-RE
Protein status:LD15658.pep: gold
Preliminary Size:2460
Sequenced Size:2278

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17490 2001-01-01 Release 2 assignment
CG17490 2001-10-10 Blastp of sequenced clone
CG17490 2003-01-01 Sim4 clustering to Release 3
CG17490 2008-04-29 Release 5.5 accounting
CG17490 2008-08-15 Release 5.9 accounting
CG17490 2008-12-18 5.12 accounting

Clone Sequence Records

LD15658.complete Sequence

2278 bp (2278 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061207

> LD15658.complete
CGCACTTATAATCACATTAACCATGAACCCGTACAATAAGTTTCAAGATA
TGGTTTTAAAGCAATGGTTGGTCATGGATGATGCACTTTTCCAAGCATGT
GGGTTTTGTCTAGTTGCGGCATCTGATGACCAGTCGGTGTTTATCACTTG
GGACAAGTATTATTTGCTAAACATACGCTTTAAGATGCCAGAGGACAGCT
GCAGGATAAAAATGACTGCTGTGCGAATTCCTGTGCCTAAAAGTGGAGGA
GGCTATATTAGGAGTGTGCATGCTTTGAGGTACAATACGATTCTGCATAT
GTCGAATGGGGAGTTATACAGCTTTACCTCATTTAAGGCCCTGAATCTTA
TAAAATGGCTCAATGCAGTTCGTTGTTTAGCTATAGTCGATGTGGGATTC
AGCGTGATTCGAATAGAGAATCGCCGACTGCTGCTGCAGACGTATGTTGA
TCTTCCTGATTGGGAAAAGGACAAGTGTACACTGCAACATTCATTTGACA
TAACTTTTGACCAGGAGAACATATTTCAGAGCGACTGGCAGCATAACGAA
TACACTCTGACAACTTTAAAAGTGACCGAAAAGGAAGAAGAGTTCGCACG
AACTCTTTTCGGCACAAGAGCGGCAGAACAAAATTATATTCACATATTCA
GCATAGGTGGACATGTATTTGCGTTGGCTTATAATTACAAAACAACATCA
GATAGTACCGGTCCTGACTATAATATCGAGCTCCTGTGCATTTATGCAGC
GCACGTTAAATTCATTAAACTGCTACCAATGGAGAACCTTTGTTTGATTT
TTCTCGGCTCTGGCAGTATAGACATGTGGTACACGTCCAGGCTCCTTTCT
ATAAAACAGCGTCAAATTTTTCACACAGGTGCTGAATGGCTGGACTACGA
TGCAACAAGTGCCAATGGCGACGTCTATTACACAGACGGGAACCAGCTAG
TGCGACTGCGATTCAAATACAACGCCCAGCTTGACGAGTGTTTTGTCTAC
ACCTTGACGAAGCCAGTCTCCGGGATATACGCATGCTGTTGGATAGACCA
AAAAGAAGAATTGTTCTGCCTGAGCGACAACAACACACTTTATTGCATTT
CTTTTGGGATGTCCGAAATGAACGATCAAACGCTGAGAATTTCAACGCCG
AACTTTGCACCATCAGCTTTGATGAGACTGCAGCACAATGCCGAAGCCTT
GCAGGAATATAAAAAACATCCTGATTCACTAAGGCAAAAATTATATAGGG
AGTATAAGCAACAGCAGCTTATATCTATGAGTAAAAATATCCGGAGAGTA
AATGCGGCCATTAAAACCTCACTGGAATACCACCTTCAAGTACCTATTGA
TATTGTCAGGGATAATGTTCTTCTACAGGCAGCGCAGAGTCTAGATCTTG
ATCAGAAAAGCTGTATATACGCTGTGCTTAACGTCAGACTTATCGATAGC
CGGCCCCTATTGCAGGGGACATTTTGGAAGCTTTTGATATGCTATGACAA
CCGCATCAATGTCCTCCTACTGCCCACAGAAGTACTTGTTAATAAAAAAT
GTTGCGTGGTTATAGCGTTAAGTAAAATGAAAAACGAGCATCTGCCTCAT
TTTAAAATCCAGCTTCTGCAACTTGTGGAACTTAATGAGCAATCATGTGC
TGTACTTTTTCAGGTACCGGTAGAAAGTTGTGGAAATACATTCCGAGCAA
TTTTCAGTGGAAGAATAGTACCTGCGAAATACAGGTTGAACAATAAGCAA
TTTATGGAAAGGAAACCAAGTATACCAAAAATCAGGCAGGTCAGCAGTCT
TGGAAGTCAATTCACTTTTCCCAATATAGCGGATCTATTTTGCAATGCCG
TCTCCATTCACAATGACTATTGTAAATTGCATTTTATAAACGAAAAGTTG
CAATTCCATTTAAATGGAATGTTGGAAAGTAAAGATGCTTCAGCGATTTA
CTATTTTAAGCAACATATTATTCTAAACTCGGATCAACTGGAATCTGCAT
CCAAAAATTATGACATGACCTTTCATACAATAATGAGCGACGTTGACCGA
TTTCGGTACCGACAATGTAACGACATCTTGGCCCCTGGAACAAATTTTTC
CGTTTTAAAGTCAAAATATAATATCATTAGAAATGACATTCATTAAGAAT
TTTGCGTACATCGAAACTATTCAATAACCTTTTACGCTCACTTTTCTTAT
TTATACCCTATAGTTAGATAAACTAAATCTAAATCTAATAAACTAAATCT
AATCTAAAAAAAAAAAAAAAAAAAAAAA

LD15658.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490.a 1819 CG17490.a 458..1057 1658..2257 2985 99.8 Plus
CG17490-RA 1518 CG17490-RA 458..1057 1658..2257 2985 99.8 Plus
CG17490-RC 1381 CG17490-RC 112..486 1663..2037 1875 100 Plus
CG17490.a 1819 CG17490.a 185..467 1..283 1415 100 Plus
CG17490-RA 1518 CG17490-RA 185..467 1..283 1415 100 Plus
CG17490-RC 1381 CG17490-RC 47..114 1..68 340 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 22429531..22431565 1..2035 10160 100 Plus
chr2L 23010047 chr2L 22431618..22431838 2035..2255 1105 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:03:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22538290..22540324 1..2035 10175 100 Plus
2L 23513712 2L 22540377..22540599 2035..2257 1115 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22538290..22540324 1..2035 10175 100 Plus
2L 23513712 2L 22540377..22540599 2035..2257 1115 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:17:33 has no hits.

LD15658.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:18:11 Download gff for LD15658.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 22431619..22431838 2036..2255 100   Plus
chr2L 22429531..22431565 1..2035 99 -> Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:46:07 Download gff for LD15658.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RE 1..2124 23..2146 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:34:02 Download gff for LD15658.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RE 1..2124 23..2146 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:53 Download gff for LD15658.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RB 1..2145 2..2146 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:43:26 Download gff for LD15658.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RE 1..2124 23..2146 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:29:30 Download gff for LD15658.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RB 1..2255 1..2255 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:46:07 Download gff for LD15658.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RE 1..2255 1..2255 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:02 Download gff for LD15658.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RE 61..2315 1..2255 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:53 Download gff for LD15658.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RB 1..2255 1..2255 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:43:26 Download gff for LD15658.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RE 61..2315 1..2255 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:18:11 Download gff for LD15658.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22540378..22540597 2036..2255 100   Plus
2L 22538290..22540324 1..2035 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:18:11 Download gff for LD15658.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22540378..22540597 2036..2255 100   Plus
2L 22538290..22540324 1..2035 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:18:11 Download gff for LD15658.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22540378..22540597 2036..2255 100   Plus
2L 22538290..22540324 1..2035 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:02 Download gff for LD15658.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22431022..22433056 1..2035 100 -> Plus
arm_2L 22433110..22433329 2036..2255 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:51:40 Download gff for LD15658.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22538290..22540324 1..2035 100 -> Plus
2L 22540378..22540597 2036..2255 100   Plus

LD15658.hyp Sequence

Translation from 0 to 2145

> LD15658.hyp
ALIITLTMNPYNKFQDMVLKQWLVMDDALFQACGFCLVAASDDQSVFITW
DKYYLLNIRFKMPEDSCRIKMTAVRIPVPKSGGGYIRSVHALRYNTILHM
SNGELYSFTSFKALNLIKWLNAVRCLAIVDVGFSVIRIENRRLLLQTYVD
LPDWEKDKCTLQHSFDITFDQENIFQSDWQHNEYTLTTLKVTEKEEEFAR
TLFGTRAAEQNYIHIFSIGGHVFALAYNYKTTSDSTGPDYNIELLCIYAA
HVKFIKLLPMENLCLIFLGSGSIDMWYTSRLLSIKQRQIFHTGAEWLDYD
ATSANGDVYYTDGNQLVRLRFKYNAQLDECFVYTLTKPVSGIYACCWIDQ
KEELFCLSDNNTLYCISFGMSEMNDQTLRISTPNFAPSALMRLQHNAEAL
QEYKKHPDSLRQKLYREYKQQQLISMSKNIRRVNAAIKTSLEYHLQVPID
IVRDNVLLQAAQSLDLDQKSCIYAVLNVRLIDSRPLLQGTFWKLLICYDN
RINVLLLPTEVLVNKKCCVVIALSKMKNEHLPHFKIQLLQLVELNEQSCA
VLFQVPVESCGNTFRAIFSGRIVPAKYRLNNKQFMERKPSIPKIRQVSSL
GSQFTFPNIADLFCNAVSIHNDYCKLHFINEKLQFHLNGMLESKDASAIY
YFKQHIILNSDQLESASKNYDMTFHTIMSDVDRFRYRQCNDILAPGTNFS
VLKSKYNIIRNDIH*

LD15658.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-PG 707 CG17490-PG 1..707 8..714 3727 100 Plus
CG17490-PE 707 CG17490-PE 1..707 8..714 3727 100 Plus
CG17490-PF 130 CG17490-PF 1..130 585..714 686 100 Plus
CG17490-PA 130 CG17490-PA 1..130 585..714 686 100 Plus
CG17490-PC 134 CG17490-PC 2..125 555..678 652 100 Plus

LD15658.pep Sequence

Translation from 22 to 2145

> LD15658.pep
MNPYNKFQDMVLKQWLVMDDALFQACGFCLVAASDDQSVFITWDKYYLLN
IRFKMPEDSCRIKMTAVRIPVPKSGGGYIRSVHALRYNTILHMSNGELYS
FTSFKALNLIKWLNAVRCLAIVDVGFSVIRIENRRLLLQTYVDLPDWEKD
KCTLQHSFDITFDQENIFQSDWQHNEYTLTTLKVTEKEEEFARTLFGTRA
AEQNYIHIFSIGGHVFALAYNYKTTSDSTGPDYNIELLCIYAAHVKFIKL
LPMENLCLIFLGSGSIDMWYTSRLLSIKQRQIFHTGAEWLDYDATSANGD
VYYTDGNQLVRLRFKYNAQLDECFVYTLTKPVSGIYACCWIDQKEELFCL
SDNNTLYCISFGMSEMNDQTLRISTPNFAPSALMRLQHNAEALQEYKKHP
DSLRQKLYREYKQQQLISMSKNIRRVNAAIKTSLEYHLQVPIDIVRDNVL
LQAAQSLDLDQKSCIYAVLNVRLIDSRPLLQGTFWKLLICYDNRINVLLL
PTEVLVNKKCCVVIALSKMKNEHLPHFKIQLLQLVELNEQSCAVLFQVPV
ESCGNTFRAIFSGRIVPAKYRLNNKQFMERKPSIPKIRQVSSLGSQFTFP
NIADLFCNAVSIHNDYCKLHFINEKLQFHLNGMLESKDASAIYYFKQHII
LNSDQLESASKNYDMTFHTIMSDVDRFRYRQCNDILAPGTNFSVLKSKYN
IIRNDIH*

LD15658.pep Blast Records

Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13292-PA 858 GH13292-PA 21..557 15..546 1211 43.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-PG 707 CG17490-PG 1..707 1..707 3727 100 Plus
CG17490-PE 707 CG17490-PE 1..707 1..707 3727 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17484-PA 756 GI17484-PA 20..455 15..442 1098 46.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20462-PA 692 GL20462-PA 20..674 13..656 1505 46 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30044-PA 692 GA30044-PA 20..674 13..656 1522 46.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26731-PA 707 GM26731-PA 1..707 1..707 3447 89.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17705-PA 707 GD17705-PA 1..707 1..707 3443 89.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15046-PA 992 GJ15046-PA 21..677 15..654 1371 42.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23710-PA 754 GK23710-PA 42..754 15..707 1353 39.9 Plus