Clone LD15753 Report

Search the DGRC for LD15753

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:157
Well:53
Vector:pBS SK-
Associated Gene/TranscriptCG31274-RB
Protein status:LD15753.pep: gold
Preliminary Size:1741
Sequenced Size:1404

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31447 2001-10-10 Blastp of sequenced clone
CG31447 2003-01-01 Sim4 clustering to Release 3
CG31274 2008-04-29 Release 5.5 accounting
MESK4 2008-08-15 Release 5.9 accounting
MESK4 2008-12-18 5.12 accounting

Clone Sequence Records

LD15753.complete Sequence

1404 bp (1404 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061210

> LD15753.complete
TTGGACCAAAATAAATACCATCCGACGGAGTCCCGATCCCGATTGGAAAA
CACCAAGAATAGGAGCTGCTGCCAGTTATGTAGATCTACGCCGTTATGTC
TGGAACATCGACCTCTGAACGCTCCAACTCCGAAGACAGCCCGTTGAATC
CCTGCCTAACGGAGGTCCTCAGGAATTGTGCCAACATTCAGTCGCTGGAG
AGCTTGAACTACGAATATAACGACGTTTTGCTGACCGAAGACAACGTGGG
GAAGATGATTACGCCGAATCCGTATTCCTTTAGTGGCAACATTTCCATCA
GCAGTTGTCCAAGTGAAGATGTATCATTTTCGGAAAGCATCCTAGAGGAC
AACGGACGCATTTCGCTGGCCTATGAGAACCTGAAGACAATTCCGCGGCG
ACTGGCCGACAAATTCGCAGCGCAGACCAAGTTTCTCGATTTGAGTCACA
ATGATTTCCGAAACTTGAGATTTCTCTCCTTTTTCGAGGATCTGGACACT
TTAATCCTGGACCGCAACGTAAACCTGGACATAAACACTTTTCCTTATTT
GCCGAGCTTAAGGATCTTGTGGATCAACAATTGCGATATAGCAAATATAA
CCGATTGGATACACCGCATCGAACGGCACTGTCCTGCGCTGGATCAGCTC
TCTTGCATGGGGAATCCTGGCATCCGCACAGTTTTCGGGGGCCAAGGACC
CCGCGAGTATATACTACAGGTGCTTCCCCAGCTAAAATATCTCGATGGAC
TTCCAACCAGCAGGAATGCAGCTTATGCGACGCTGTCTTCCTCACAAGGA
CAGGGTCCGGACTCCACGAGCAATTCGGAAAAGCCTCCACTCGCATCCGC
ATTCACTTTCAAGGACATCATCCGTCCAAAGTATTCCAGAAAATCGCACA
GCGGACGGATGTTTGGCAACGGCTCCTCCACAAACTGAAGTAATATGCCG
AAGGAGGGAGGGGTATTCCACTGATTGCATTCTGTCCCATTGTTGGACTA
TTTTTAACCGTCCGCTGGATTATCAGCGCTGCCCTCGCTGCCCTGCAGTC
GTCGATTGCACCTACAGTGCTATGCAAGTAAATATGCATATGGTTATTGC
CATGTACGTATATAAATTTGCAATTGTATGACGATGGACACGCACAAACC
TAGTGAGAATTAATCTAGTGCATTAAAGCAATTTTTACAATAATAAGAGT
CAATGACCTCAGCGAATAGTCAAGTATACAATAGGCACCATCTTCAGAAT
AAATGTTCTTCGACTTATTCTGAATGTCGTTCAGTGCCCGATTAATTTTA
CGGATGTAAGCACATGGGCACGAGTTAATATTGCTTAAAACTTGAGGCCA
AAGATTAAAATTATGATTCAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

LD15753.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
MESK4-RA 1591 MESK4-RA 218..1591 1..1374 6870 100 Plus
CG31274-RB 1496 CG31274-RB 9..1381 1..1373 6850 99.9 Plus
CG31274-RA 1550 CG31274-RA 199..1435 137..1373 6170 99.9 Plus
CG31274-RA 1550 CG31274-RA 9..147 1..139 695 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12814004..12814807 571..1374 4020 100 Plus
chr3R 27901430 chr3R 12818216..12819018 571..1373 3985 99.8 Plus
chr3R 27901430 chr3R 12813506..12813941 137..572 2180 100 Plus
chr3R 27901430 chr3R 12817718..12818153 137..572 2180 100 Plus
chr3R 27901430 chr3R 12813316..12813454 1..139 695 100 Plus
chr3R 27901430 chr3R 12817528..12817666 1..139 695 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:03:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16989518..16990323 571..1376 4030 100 Plus
3R 32079331 3R 16993730..16994532 571..1373 4000 99.9 Plus
3R 32079331 3R 16989020..16989455 137..572 2180 100 Plus
3R 32079331 3R 16993232..16993667 137..572 2180 100 Plus
3R 32079331 3R 16988830..16988968 1..139 695 100 Plus
3R 32079331 3R 16993042..16993180 1..139 695 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16730349..16731154 571..1376 4030 100 Plus
3R 31820162 3R 16734561..16735363 571..1373 4000 99.8 Plus
3R 31820162 3R 16734063..16734498 137..572 2180 100 Plus
3R 31820162 3R 16729851..16730286 137..572 2180 100 Plus
3R 31820162 3R 16733873..16734011 1..139 695 100 Plus
3R 31820162 3R 16729661..16729799 1..139 695 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:31:12 has no hits.

LD15753.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:32:20 Download gff for LD15753.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12813316..12813454 1..139 100 -> Plus
chr3R 12813509..12813940 140..571 100 -> Plus
chr3R 12814005..12814807 572..1374 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:50:27 Download gff for LD15753.complete
Subject Subject Range Query Range Percent Splice Strand
CG31274-RB 1..843 96..938 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:46:22 Download gff for LD15753.complete
Subject Subject Range Query Range Percent Splice Strand
MESK4-RA 1..843 96..938 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:54:00 Download gff for LD15753.complete
Subject Subject Range Query Range Percent Splice Strand
MESK4-RA 1..843 96..938 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:15:05 Download gff for LD15753.complete
Subject Subject Range Query Range Percent Splice Strand
CG31274-RB 1..843 96..938 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:37:49 Download gff for LD15753.complete
Subject Subject Range Query Range Percent Splice Strand
MESK4-RA 1..843 96..938 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:29:48 Download gff for LD15753.complete
Subject Subject Range Query Range Percent Splice Strand
MESK4-RA 1..1372 1..1372 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:46:21 Download gff for LD15753.complete
Subject Subject Range Query Range Percent Splice Strand
MESK4-RA 1..1372 1..1372 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:00 Download gff for LD15753.complete
Subject Subject Range Query Range Percent Splice Strand
MESK4-RA 17..1390 1..1374 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:15:05 Download gff for LD15753.complete
Subject Subject Range Query Range Percent Splice Strand
MESK4-RA 1..1372 1..1372 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:49 Download gff for LD15753.complete
Subject Subject Range Query Range Percent Splice Strand
MESK4-RA 17..1390 1..1374 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:32:20 Download gff for LD15753.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16989023..16989454 140..571 100 -> Plus
3R 16988830..16988968 1..139 100 -> Plus
3R 16989519..16990321 572..1374 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:32:20 Download gff for LD15753.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16989023..16989454 140..571 100 -> Plus
3R 16988830..16988968 1..139 100 -> Plus
3R 16989519..16990321 572..1374 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:32:20 Download gff for LD15753.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16989023..16989454 140..571 100 -> Plus
3R 16988830..16988968 1..139 100 -> Plus
3R 16989519..16990321 572..1374 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:00 Download gff for LD15753.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12814552..12814690 1..139 100 -> Plus
arm_3R 12814745..12815176 140..571 100 -> Plus
arm_3R 12815241..12816043 572..1374 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:51:56 Download gff for LD15753.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16729854..16730285 140..571 100 -> Plus
3R 16730350..16731152 572..1374 100   Plus
3R 16729661..16729799 1..139 100 -> Plus

LD15753.hyp Sequence

Translation from 95 to 937

> LD15753.hyp
MSGTSTSERSNSEDSPLNPCLTEVLRNCANIQSLESLNYEYNDVLLTEDN
VGKMITPNPYSFSGNISISSCPSEDVSFSESILEDNGRISLAYENLKTIP
RRLADKFAAQTKFLDLSHNDFRNLRFLSFFEDLDTLILDRNVNLDINTFP
YLPSLRILWINNCDIANITDWIHRIERHCPALDQLSCMGNPGIRTVFGGQ
GPREYILQVLPQLKYLDGLPTSRNAAYATLSSSQGQGPDSTSNSEKPPLA
SAFTFKDIIRPKYSRKSHSGRMFGNGSSTN*

LD15753.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31274-PB 280 CG31274-PB 1..280 1..280 1466 100 Plus
MESK4-PB 280 CG31447-PB 1..280 1..280 1466 100 Plus
MESK4-PA 280 CG31447-PA 1..280 1..280 1466 100 Plus
CG31076-PB 182 CG31076-PB 7..153 85..217 162 32.4 Plus

LD15753.pep Sequence

Translation from 95 to 937

> LD15753.pep
MSGTSTSERSNSEDSPLNPCLTEVLRNCANIQSLESLNYEYNDVLLTEDN
VGKMITPNPYSFSGNISISSCPSEDVSFSESILEDNGRISLAYENLKTIP
RRLADKFAAQTKFLDLSHNDFRNLRFLSFFEDLDTLILDRNVNLDINTFP
YLPSLRILWINNCDIANITDWIHRIERHCPALDQLSCMGNPGIRTVFGGQ
GPREYILQVLPQLKYLDGLPTSRNAAYATLSSSQGQGPDSTSNSEKPPLA
SAFTFKDIIRPKYSRKSHSGRMFGNGSSTN*

LD15753.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17073-PA 283 GF17073-PA 1..283 1..280 1222 82.7 Plus
Dana\GF22965-PA 184 GF22965-PA 8..167 84..229 175 34.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21851-PA 280 GG21851-PA 1..280 1..280 1379 93.2 Plus
Dere\GG21862-PA 280 GG21862-PA 1..280 1..280 1373 92.9 Plus
Dere\GG11070-PA 290 GG11070-PA 1..259 1..259 1276 93.1 Plus
Dere\GG12157-PA 182 GG12157-PA 7..166 85..230 155 29.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19551-PA 299 GH19551-PA 1..299 1..280 829 61.3 Plus
Dgri\GH18964-PA 187 GH18964-PA 2..180 80..241 168 30.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31274-PB 280 CG31274-PB 1..280 1..280 1466 100 Plus
MESK4-PB 280 CG31447-PB 1..280 1..280 1466 100 Plus
MESK4-PA 280 CG31447-PA 1..280 1..280 1466 100 Plus
CG31076-PB 182 CG31076-PB 7..153 85..217 162 32.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23847-PA 306 GI23847-PA 1..299 1..269 794 57.8 Plus
Dmoj\GI23294-PA 187 GI23294-PA 3..169 82..230 164 32.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24541-PA 295 GL24541-PA 1..295 1..280 882 63.9 Plus
Dper\GL23629-PA 181 GL23629-PA 2..165 80..229 153 30.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16142-PA 295 GA16142-PA 1..295 1..280 877 64.1 Plus
Dpse\GA22495-PA 181 GA22495-PA 2..165 80..229 152 30.3 Plus
Dpse\GA26671-PA 181 GA26671-PA 2..165 80..229 152 30.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15193-PA 280 GM15193-PA 1..280 1..280 1371 93.6 Plus
Dsec\GM22064-PA 280 GM22064-PA 1..280 1..280 1371 93.6 Plus
Dsec\GM15189-PA 325 GM15189-PA 56..325 11..280 1322 93.3 Plus
Dsec\GM16199-PA 196 GM16199-PA 1..196 85..280 988 94.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19124-PA 280 GD19124-PA 1..280 1..280 1408 95.4 Plus
Dsim\GD19125-PA 280 GD19125-PA 1..280 1..280 1396 94.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10561-PA 310 GJ10561-PA 1..310 1..280 831 58.4 Plus
Dvir\GJ24148-PA 187 GJ24148-PA 13..180 88..244 167 32 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14506-PA 298 GK14506-PA 1..298 1..280 865 62.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24595-PA 280 GE24595-PA 1..280 1..280 1387 93.2 Plus
Dyak\GE10602-PA 182 GE10602-PA 7..173 85..237 158 30.4 Plus