Clone LD15841 Report

Search the DGRC for LD15841

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:158
Well:41
Vector:pBS SK-
Associated Gene/TranscriptGNBP1-RA
Protein status:LD15841.pep: gold
Preliminary Size:1758
Sequenced Size:1794

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6895 2007-11-01 Manual selection by Ken Wan
GNBP1 2008-04-29 Picked prior to 5.5
GNBP1 2008-08-15 Release 5.9 accounting
GNBP1 2008-12-18 5.12 accounting

Clone Sequence Records

LD15841.complete Sequence

1794 bp assembled on 2008-05-27

GenBank Submission: BT032835

> LD15841.complete
CCAGATCGCAGCCGGAGCTGATATCAACGTGGATTTGCATTCGCCGAATC
GCGATTGTCCGGACCAACTTAAAGTAAACAAATAATAGTAATCGCTCCTC
ACCAGCGACAGAAACCGGTCTGCCAGTGAGATAGACACACAGATTGAGTC
AGAGGCTCGGGATTCTTGTCGAAAAGTGCTGAACTCGAGGATTCAAAATG
CCAGGATTGTGCATTGGAATCCTTCTGCTCATTGGTTTTGGATGCACCAC
TGCCTACAAGATCCCCACACCGACTGTGGAGCTCCTTGAGACTGGATTTA
GCGTTTCCATACCGGATGAAGAGGGCGTAAAAGTGGTGGCCTTTAATGTA
AATCGCAATCGGAATTTCACATCCTTCATAAACGAGGGACAGTACAATGT
GAGATTGACTGAACCCCAGAACGGCAGGTGGACGACCAACTTCAGTTCGG
TTCCCTTGAGATCCCAAGATGTTCTATACCTTTGGACAAGTGTGCAGCAC
CAAAAGGCTGTGTATCAAGATCTGGCGCAGCCCCTGCCAGTCTGCAATCT
CGGCGGAGAGTATCGGCCCAGGGGATGTTCGCCCGGTGATGATGACTTTA
CGGATGACAACCAGCTAAGTACTGAGGACAGTGCTTTGGAACCCACCGCT
CCCTCCGTCTGTGAACCTTCTGAAAGCCAGGTTTCGCCGCAAATCGGTGT
TTCCATATGTAAGGGACAACTTTTGTTTGAGGAGACTTTTGATCAGCTGA
ATGAATCTCTGTGGATACATGATGTTCGCCTGCCCCTCGACTCCAAGGAT
GCAGAGTTCGTCTTGTACGACGGGAAGGCCAAAGTTCACGATGGCAACCT
GGTGATTGAGCCGCTTCTTTGGTCCAGCTATCGCCCGGATCTCTCCATAG
CCAACTCCAGGCTCGATCTATCGGAGCGTTGTACTGGAACCCATAACAGA
ATTAAGGAATGCATCCTGCATTCCACGGGCAGTGGACCCAGTGGGATAAT
GCCCCCAATTGTAACACCTCGAATCAGCACCAAGGAAACCTTTGCCTTTC
AATACGGACGCATTGAGATCCGTGCCAAGCTACCAAAGGGAGATTGGATA
GTACCACTCCTACTACTCGAACCCCTCACCGAATGGTACGGGCAATCGGG
CTACGAATCCGGCCAGCTGCGAGTGGCCTTGGCCAGGGGTAACTCCGTGC
TGAGGATGCCGCGCGGAAAGCTTGTAGATGGTAGATCCCTATACGGAGGA
CCCGTACTCTCCACGGATGCCCACCAAAGGGAGGACTTATGGCTGAGCAA
GCGAAAGATATCCCATTTCGGCGATGACTTTCACACCTACAGCTTGGATT
GGAGCAGCAATAGGCTGCTCTTCTCCGTAGATGGTCAGGTCTATGGAGAG
ATGCTGAATGGTTTCACTGAACTGGACGAGAATCCCAGGTGGAAGCAGGG
CGGTCCCATGGCCCCGTTCGATAAAATGTTTTACATTTCGTTGGGCGTCT
CTGTGGGCGGATTTGGTGACTTTGTGGACCATCTTCGCACCGCCACTTAT
GAGAAGCCTTGGGCCAACTATCATCCCCAGGCGAAGCTGCAGTTCCACCA
GGCCCAAGACCAGTGGCTACCCACATGGAAACAGCCGGCCTTGAAGATCG
ATTATGTTCGTGTCTTCGCCAACTGATAACTAAAATCCATGATTTAGGTA
GATGTTTATAAAATTACACATAAGTGAACGTGCCGATCGAAATCTATAAA
TCTATAAATAAATAAAGTCCTAAGAGAAAAAAAAAAAAAAAAAA

LD15841.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP1-RA 2093 GNBP1-RA 223..2001 1..1779 8895 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 18665974..18666762 315..1103 3945 100 Plus
chr3L 24539361 chr3L 18666824..18667201 1101..1478 1890 100 Plus
chr3L 24539361 chr3L 18665488..18665802 1..315 1575 100 Plus
chr3L 24539361 chr3L 18667257..18667555 1478..1776 1480 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:03:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18676295..18677083 315..1103 3945 100 Plus
3L 28110227 3L 18677145..18677522 1101..1478 1890 100 Plus
3L 28110227 3L 18675809..18676123 1..315 1575 100 Plus
3L 28110227 3L 18677578..18677879 1478..1779 1510 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 18669395..18670183 315..1103 3945 100 Plus
3L 28103327 3L 18670245..18670622 1101..1478 1890 100 Plus
3L 28103327 3L 18668909..18669223 1..315 1575 100 Plus
3L 28103327 3L 18670678..18670979 1478..1779 1510 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:44:20 has no hits.

LD15841.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:45:12 Download gff for LD15841.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 18665488..18665802 1..315 100 -> Plus
chr3L 18665975..18666759 316..1100 100 -> Plus
chr3L 18666824..18667201 1101..1478 100 -> Plus
chr3L 18667258..18667555 1479..1776 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:50:33 Download gff for LD15841.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP1-RA 1..1479 198..1676 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:39:50 Download gff for LD15841.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP1-RA 1..1479 198..1676 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:49:14 Download gff for LD15841.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP1-RA 1..1479 198..1676 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:46:01 Download gff for LD15841.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP1-RA 1..1479 198..1676 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:19:12 Download gff for LD15841.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP1-RA 1..1479 198..1676 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:09:31 Download gff for LD15841.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP1-RA 1..1772 5..1776 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:39:50 Download gff for LD15841.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP1-RA 1..1772 5..1776 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:49:14 Download gff for LD15841.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP1-RA 10..1785 1..1776 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:46:01 Download gff for LD15841.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP1-RA 1..1772 5..1776 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:19:12 Download gff for LD15841.complete
Subject Subject Range Query Range Percent Splice Strand
GNBP1-RA 10..1785 1..1776 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:45:12 Download gff for LD15841.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18675809..18676123 1..315 100 -> Plus
3L 18676296..18677080 316..1100 100 -> Plus
3L 18677145..18677522 1101..1478 100 -> Plus
3L 18677579..18677876 1479..1776 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:45:12 Download gff for LD15841.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18675809..18676123 1..315 100 -> Plus
3L 18676296..18677080 316..1100 100 -> Plus
3L 18677145..18677522 1101..1478 100 -> Plus
3L 18677579..18677876 1479..1776 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:45:12 Download gff for LD15841.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18675809..18676123 1..315 100 -> Plus
3L 18676296..18677080 316..1100 100 -> Plus
3L 18677145..18677522 1101..1478 100 -> Plus
3L 18677579..18677876 1479..1776 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:49:14 Download gff for LD15841.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18670679..18670976 1479..1776 100   Plus
arm_3L 18668909..18669223 1..315 100 -> Plus
arm_3L 18669396..18670180 316..1100 100 -> Plus
arm_3L 18670245..18670622 1101..1478 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:21:56 Download gff for LD15841.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18668909..18669223 1..315 100 -> Plus
3L 18669396..18670180 316..1100 100 -> Plus
3L 18670245..18670622 1101..1478 100 -> Plus
3L 18670679..18670976 1479..1776 100   Plus

LD15841.pep Sequence

Translation from 197 to 1675

> LD15841.pep
MPGLCIGILLLIGFGCTTAYKIPTPTVELLETGFSVSIPDEEGVKVVAFN
VNRNRNFTSFINEGQYNVRLTEPQNGRWTTNFSSVPLRSQDVLYLWTSVQ
HQKAVYQDLAQPLPVCNLGGEYRPRGCSPGDDDFTDDNQLSTEDSALEPT
APSVCEPSESQVSPQIGVSICKGQLLFEETFDQLNESLWIHDVRLPLDSK
DAEFVLYDGKAKVHDGNLVIEPLLWSSYRPDLSIANSRLDLSERCTGTHN
RIKECILHSTGSGPSGIMPPIVTPRISTKETFAFQYGRIEIRAKLPKGDW
IVPLLLLEPLTEWYGQSGYESGQLRVALARGNSVLRMPRGKLVDGRSLYG
GPVLSTDAHQREDLWLSKRKISHFGDDFHTYSLDWSSNRLLFSVDGQVYG
EMLNGFTELDENPRWKQGGPMAPFDKMFYISLGVSVGGFGDFVDHLRTAT
YEKPWANYHPQAKLQFHQAQDQWLPTWKQPALKIDYVRVFAN*

LD15841.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23634-PA 492 GF23634-PA 1..492 1..492 1949 74 Plus
Dana\GF10811-PA 466 GF10811-PA 11..466 5..492 600 31.3 Plus
Dana\GF24364-PA 492 GF24364-PA 4..490 1..490 486 29.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13669-PA 492 GG13669-PA 1..492 1..492 2440 93.5 Plus
Dere\GG15732-PA 432 GG15732-PA 2..431 29..491 594 33 Plus
Dere\GG14358-PA 486 GG14358-PA 14..485 9..491 501 29.8 Plus
Dere\GG13671-PA 427 GG13671-PA 107..421 157..491 313 30.5 Plus
Dere\GG13670-PA 389 GG13670-PA 75..383 155..491 237 25.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14368-PA 490 GH14368-PA 27..489 19..491 1522 62.6 Plus
Dgri\GH14367-PA 432 GH14367-PA 2..431 29..491 573 33.1 Plus
Dgri\GH15336-PA 484 GH15336-PA 9..482 4..490 463 29.8 Plus
Dgri\GH17200-PA 189 GH17200-PA 1..183 295..491 193 29 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP1-PA 492 CG6895-PA 1..492 1..492 2643 100 Plus
GNBP2-PB 461 CG4144-PB 9..460 8..491 580 32.5 Plus
GNBP2-PA 432 CG4144-PA 2..431 29..491 559 32.6 Plus
GNBP2-PD 410 CG4144-PD 15..409 70..491 529 33.1 Plus
GNBP3-PA 490 CG5008-PA 13..489 5..491 478 29.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13965-PA 495 GI13965-PA 28..494 20..491 1513 62 Plus
Dmoj\GI11311-PA 451 GI11311-PA 1..451 22..492 568 30.9 Plus
Dmoj\GI12940-PA 487 GI12940-PA 4..486 3..491 487 29.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22887-PA 499 GL22887-PA 1..499 1..492 1896 72 Plus
Dper\GL22693-PA 432 GL22693-PA 2..431 29..491 584 33.5 Plus
Dper\GL20727-PA 449 GL20727-PA 12..448 4..491 441 28.3 Plus
Dper\GL22888-PA 129 GL22888-PA 21..115 316..411 168 34.7 Plus
Dper\GL10856-PA 101 GL10856-PA 2..100 18..115 161 37.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19936-PA 499 GA19936-PA 1..499 1..492 1903 72.4 Plus
Dpse\GA17986-PA 432 GA17986-PA 2..431 29..491 582 33.8 Plus
Dpse\GA18590-PA 496 GA18590-PA 12..495 4..491 497 30 Plus
Dpse\GA23915-PA 392 GA23915-PA 57..386 150..491 359 28.7 Plus
Dpse\GA23914-PA 136 GA23914-PA 4..122 284..411 237 38.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14984-PA 492 GM14984-PA 1..492 1..492 2586 97.6 Plus
Dsec\GM14928-PA 432 GM14928-PA 2..431 29..491 591 32.6 Plus
Dsec\GM25102-PA 490 GM25102-PA 25..489 19..491 482 29.6 Plus
Dsec\GM14986-PA 625 GM14986-PA 308..619 158..491 313 31.3 Plus
Dsec\GM22021-PA 152 GM22021-PA 12..115 8..111 146 31.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GNBP1-PA 492 GD14761-PA 1..492 1..492 2595 98 Plus
Dsim\GD12334-PA 432 GD12334-PA 2..431 29..491 591 32.6 Plus
Dsim\GD14138-PA 490 GD14138-PA 13..489 5..491 493 29.9 Plus
Dsim\GD14763-PA 332 GD14763-PA 5..326 155..491 318 30.7 Plus
Dsim\GD14762-PA 376 GD14762-PA 158..376 171..401 201 27.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11226-PA 500 GJ11226-PA 12..499 9..491 1490 60.6 Plus
Dvir\GJ14103-PA 432 GJ14103-PA 2..432 29..492 601 32.4 Plus
Dvir\GJ13082-PA 491 GJ13082-PA 21..490 18..491 495 30.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12242-PA 495 GK12242-PA 1..491 1..491 1662 62.3 Plus
Dwil\GK10581-PA 432 GK10581-PA 2..431 29..491 585 33.4 Plus
Dwil\GK16747-PA 497 GK16747-PA 6..496 10..491 509 31.4 Plus
Dwil\GK10787-PA 180 GK10787-PA 1..174 295..491 174 25.5 Plus
Dwil\GK20626-PA 146 GK20626-PA 12..112 15..115 148 35.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GNBP1-PA 492 GE19965-PA 1..492 1..492 2473 94.1 Plus
Dyak\GE22064-PA 432 GE22064-PA 2..431 29..491 608 33.2 Plus
Dyak\GE20789-PA 490 GE20789-PA 25..489 19..491 476 30 Plus
Dyak\GE19968-PA 464 GE19968-PA 4..458 7..491 299 26.9 Plus
Dyak\GE19966-PA 458 GE19966-PA 139..452 150..491 246 26.1 Plus

LD15841.hyp Sequence

Translation from 197 to 1675

> LD15841.hyp
MPGLCIGILLLIGFGCTTAYKIPTPTVELLETGFSVSIPDEEGVKVVAFN
VNRNRNFTSFINEGQYNVRLTEPQNGRWTTNFSSVPLRSQDVLYLWTSVQ
HQKAVYQDLAQPLPVCNLGGEYRPRGCSPGDDDFTDDNQLSTEDSALEPT
APSVCEPSESQVSPQIGVSICKGQLLFEETFDQLNESLWIHDVRLPLDSK
DAEFVLYDGKAKVHDGNLVIEPLLWSSYRPDLSIANSRLDLSERCTGTHN
RIKECILHSTGSGPSGIMPPIVTPRISTKETFAFQYGRIEIRAKLPKGDW
IVPLLLLEPLTEWYGQSGYESGQLRVALARGNSVLRMPRGKLVDGRSLYG
GPVLSTDAHQREDLWLSKRKISHFGDDFHTYSLDWSSNRLLFSVDGQVYG
EMLNGFTELDENPRWKQGGPMAPFDKMFYISLGVSVGGFGDFVDHLRTAT
YEKPWANYHPQAKLQFHQAQDQWLPTWKQPALKIDYVRVFAN*

LD15841.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
GNBP1-PA 492 CG6895-PA 1..492 1..492 2643 100 Plus
GNBP2-PB 461 CG4144-PB 9..460 8..491 580 32.5 Plus
GNBP2-PA 432 CG4144-PA 2..431 29..491 559 32.6 Plus
GNBP2-PD 410 CG4144-PD 15..409 70..491 529 33.1 Plus
GNBP3-PA 490 CG5008-PA 13..489 5..491 478 29.5 Plus