Clone LD15927 Report

Search the DGRC for LD15927

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:159
Well:27
Vector:pBS SK-
Associated Gene/Transcriptwap-RA
Protein status:LD15927.pep: gold
Sequenced Size:3032

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14614-RA 2009-06-22 Replacement based on scoring

Clone Sequence Records

LD15927.complete Sequence

3032 bp assembled on 2009-10-01

GenBank Submission: BT099938.1

> LD15927.complete
CGGTCACACTGTTTTTGTGTGAAAATTCTGTCGAAAAGAATGTATTAAAA
GTTCTTTGAATACTAATTCCGTGTAATTCCGACCGTGCTGTTTCAGAAAA
CTGTGGTTGGATTGGAAACTTAACCAAATTATAAGGTAAAACCGGGGCAG
CTTGCCCATCGAAGGACCGCCACAAACGAATTTTCGCGTCGCATTACGTT
TTAGTGTTGCCACCTTATACGGAGTGCCGGGCACAATTCCACTTGCTGGC
CAAACGGATGCGTTGCGGTCGCGATGTGCACGCCGTTGAATTAATTCCTT
CGCCCTGTTGATTGAGTACAGTTCGACTTCTCCGATCGGTGTCCTCCAGA
CCTAAATTTCGCCGGAATAACGACGGCAAACGGACGGACGGACTCTAGTC
GGAAAACGGGCGAGCTGGCAATACTGCCAGTGCACAAAATGATGTGAATC
TCGGAAAAGAGGAAAGCTACAGGAAAAGCCAAGGAAAAGCAAGCCGGTAA
AGTGTGCAAATGCGAGTGGCAAGCAAAGACCTTTGTTTCCCATTCCATGA
AGTTTTCTTGAGTTGTCCGCTGCTGTGAGTGGTCATTATCAGCCATCATC
ATCATTGTCGTCATCATCACCAAAGGAGCTCGTCGTCATTAGGCCGGCCA
CCAGCTAAACGGCATTGAGAAAACTCAGCAGCACCTTGTCATCCAAGTCT
TGATCTTCGTCTTGGTCTGGATATCCGTATCCAATCACACAGTTCAGTTA
TGTCCTCGACCGCCGGAAAGCGCAAGGAGATCTACAAATATCTCGCGCCA
TGGCCACTGTACTCCATGAACTGGAGTGTAAGGCCGGACAAGCGATTCCG
GCTCGCACTGGGCAGCTTCATCGAGGAGTACAACAACAAGGTACAGATCA
TCAGCCTGGACGAGGACACCAGCGAATTTAGTGCTAAGAGCACCTTTGAT
CATCCATATCCGACAACCAAGATCATGTGGATCCCGGACTCCAAGGGTGT
CTATCCGGATCTGTTGGCCACCAGTGGCGACTACTTGCGGGTGTGGCGTG
CCGGGGAACCGGACACGCGGCTCGAGTGCGTACTGAATAACAACAAGAAC
AGCGACTTTTGCGCTCCCCTCACTTCGTTTGATTGGAACGAGGTGGATCC
CAATCTGGTGGGAACCTCATCGATAGACACAACCTGCACTATCTGGGGAC
TGGAGACCGGACAGCCGCACGCTCGCGTCTATGTGGCAGGACACGTGAAG
ACGCAATTGATTGCCCATGACAAGGAAGTATACGACATTGCTTTTTCGCG
GGCCGGCGGCGGTCGGGACATGTTTGCCTCGGTGGGAGCGGACGGGTCGG
TGCGCATGTTTGATCTGCGGCACTTGGAGCACTCGACCATTATATATGAG
GATCCTGCTCATACGGCGCTGCTGCGCTTGGCCTGGAACAAACAGGACCC
GAACTACTTAGCCACCGTTGCCATGGACTCGTGCGAAGTAATAATTTTAG
ATGTTCGTGTTCCTTGTACACCCGTTGCAAGACTGAGCAATCACAGAGCG
TGCGTCAACGGTATTGCGTGGGCGCCGCATAGTTCCTGTCACATCTGCAC
TGCCGGTGATGATCACCAAGCACTGATCTGGGATATACAACAAATGCCAC
GTGCAATCGAGGATCCAATTTTAGCCTATACAGCTGCCGAGGGCGAAGTC
AATCAGATTCAGTGGGGTGCCACACAGCCCGACTGGATAGCCATTTGCTA
TAACAAAGCGTGCGAGATCCTGCGGGTCTAAGTAATTTTTTTTGGTCTGG
TCCTTGCTGAAGCACCTGACTGCAATTGCTGAACAACGCACAGTCAACAA
AGAAGCAAGTCAGAAAAACACACAACACCCACAAATAAACATACATTTGC
TGTTGGTAACTTGGAAGCGGAAAGCAGTGAGCTTAAGTTGGATTAGTTCT
GTCAACACGCGTCCGCAGTTTGTTTAATTTTACTGTCTGTCGAGAGAGAG
AAAATGTGAAAGTGACGGATATAGAGGCAGAGAAATGGAAAGAGAAAGGG
CTTAAAAGAAAGATATGAGTTTGAGGGAAAGAGAAGAGGACGAAGCACTT
ATTCTAGAATTCTTAGCTGAGTTGATCTAACAAGTATGTAATTATATAAG
GTATAACCAAAATATGTTTTATAATTGTAGTTTATTTCACACTTGACAAA
TCCCGACACTCACACCCCCGAAAACTCCAATCAATTAGAGCCGCTTAATC
TTTTTTATTTCGTTTTTATACGAACCCAAATGGAATGCAGAAGAAAAAGA
AATCATATTTATTATAACACAATGTCCTACCTCGTTTTTTCAAACATGAA
TGCTGTTAATCGAGTTTTCGAGTCTGGTCAAAACAGCAACAACCACAAAA
ATACACAGAGAACAAAAAATGAGAGGTAAAAAAGTAGCCGGCAACAACGC
TTTTTCGAAATATTTTTACTTTGTTCGATTTTTGTAACAGATCCAAAAAA
CGGAAAAACGACAAAAACAAGAGATAAAGAAAAACAAAAGCAAAACCATG
GACTTAAGCAATTGCAAAACAAACATAATATGAAATGAATTAAAGAAATA
AGCGAAATACTTACATAGATTAAAGATTAAAAACCAAACCAGGAAACTGA
TGACGAACTGCACACAACACAGCTAGAATACAATACTATTTAAAGATACA
AACTAAAAGATAAAACAAATACCGAAATATATGAGCGAGAGAGAATACAA
GATTGTTGCTATATCCATTTAACAAACGAGCGAAAATAAGCAAACAAACT
ATGATCATTTCAGATAAGACACGACCCTCCATCAATAATCTCAAATCTTA
ACCACATCCCATACTTTCCACAGGACAAAGCGACTTTTTCAGATAAAATC
GAATACATTTTTTTATGTATCTTGTAATTTATAGCAATTTCACAACTTAT
ATATAAATATGTATACAGAAAGCGATAGCAGTAATAATAATCCCGATGAT
CGTGTATTGTAAAAAAAAAAAAAAAAAAAAAA

LD15927.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14614.e 3117 CG14614.e 21..3034 1..3013 15030 99.9 Plus
CG14614.c 3589 CG14614.c 21..3034 1..3013 15030 99.9 Plus
CG14614-RA 2975 CG14614-RA 40..2975 1..2935 14640 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 21847966..21849396 3010..1581 7105 99.9 Minus
chrX 22417052 chrX 21850628..21851374 747..1 3735 100 Minus
chrX 22417052 chrX 21849696..21850158 1401..939 2315 100 Minus
chrX 22417052 chrX 21850360..21850555 940..745 980 100 Minus
chrX 22417052 chrX 21849457..21849640 1582..1399 920 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:03:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22451997..22453430 3013..1581 7120 99.9 Minus
X 23542271 X 22454662..22455408 747..1 3735 100 Minus
X 23542271 X 22453730..22454192 1401..939 2315 100 Minus
X 23542271 X 22454394..22454589 940..745 980 100 Minus
X 23542271 X 22453491..22453674 1582..1399 920 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 22437089..22438522 3013..1581 7130 99.9 Minus
X 23527363 X 22439754..22440500 747..1 3735 100 Minus
X 23527363 X 22438822..22439284 1401..939 2315 100 Minus
X 23527363 X 22439486..22439681 940..745 980 100 Minus
X 23527363 X 22438583..22438766 1582..1399 920 100 Minus
Blast to na_te.dros performed 2019-03-16 00:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 828..1052 2566..2798 172 56.4 Plus
Porto1 4682 Porto1 DOC5 4682bp 4359..4504 2573..2725 152 61 Plus
McClintock 6450 McClintock McCLINTOCK 6450bp 5677..5853 2566..2730 136 59.2 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 627..674 1849..1895 120 75 Plus

LD15927.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:56:43 Download gff for LD15927.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 21847966..21849394 1583..3010 99 <- Minus
chrX 21849457..21849638 1401..1582 100 <- Minus
chrX 21849697..21850156 941..1400 100 <- Minus
chrX 21850360..21850552 748..940 100 <- Minus
chrX 21850628..21851374 1..747 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:56:35 Download gff for LD15927.complete
Subject Subject Range Query Range Percent Splice Strand
CG14614-RA 1..1032 750..1781 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:36:54 Download gff for LD15927.complete
Subject Subject Range Query Range Percent Splice Strand
CG14614-RB 1..1032 750..1781 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:38:20 Download gff for LD15927.complete
Subject Subject Range Query Range Percent Splice Strand
CG14614-RC 1..1032 750..1781 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:17:14 Download gff for LD15927.complete
Subject Subject Range Query Range Percent Splice Strand
wap-RB 1..1032 750..1781 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-01 13:57:03 Download gff for LD15927.complete
Subject Subject Range Query Range Percent Splice Strand
CG14614-RA 21..2763 1..2743 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:36:54 Download gff for LD15927.complete
Subject Subject Range Query Range Percent Splice Strand
CG14614-RA 21..3031 1..3010 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:38:20 Download gff for LD15927.complete
Subject Subject Range Query Range Percent Splice Strand
CG14614-RA 15..3025 1..3010 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:17:14 Download gff for LD15927.complete
Subject Subject Range Query Range Percent Splice Strand
wap-RA 15..3025 1..3010 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:56:43 Download gff for LD15927.complete
Subject Subject Range Query Range Percent Splice Strand
X 22452000..22453428 1583..3010 99 <- Minus
X 22453491..22453672 1401..1582 100 <- Minus
X 22453731..22454190 941..1400 100 <- Minus
X 22454394..22454586 748..940 100 <- Minus
X 22454662..22455408 1..747 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:56:43 Download gff for LD15927.complete
Subject Subject Range Query Range Percent Splice Strand
X 22452000..22453428 1583..3010 99 <- Minus
X 22453491..22453672 1401..1582 100 <- Minus
X 22453731..22454190 941..1400 100 <- Minus
X 22454394..22454586 748..940 100 <- Minus
X 22454662..22455408 1..747 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:56:43 Download gff for LD15927.complete
Subject Subject Range Query Range Percent Splice Strand
X 22452000..22453428 1583..3010 99 <- Minus
X 22453491..22453672 1401..1582 100 <- Minus
X 22453731..22454190 941..1400 100 <- Minus
X 22454394..22454586 748..940 100 <- Minus
X 22454662..22455408 1..747 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:38:20 Download gff for LD15927.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21853836..21855264 1583..3010 99 <- Minus
arm_X 21855327..21855508 1401..1582 100 <- Minus
arm_X 21855567..21856026 941..1400 100 <- Minus
arm_X 21856230..21856422 748..940 100 <- Minus
arm_X 21856498..21857244 1..747 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:20:02 Download gff for LD15927.complete
Subject Subject Range Query Range Percent Splice Strand
X 22437092..22438520 1583..3010 99 <- Minus
X 22438583..22438764 1401..1582 100 <- Minus
X 22438823..22439282 941..1400 100 <- Minus
X 22439486..22439678 748..940 100 <- Minus
X 22439754..22440500 1..747 100   Minus

LD15927.pep Sequence

Translation from 749 to 1780

> LD15927.pep
MSSTAGKRKEIYKYLAPWPLYSMNWSVRPDKRFRLALGSFIEEYNNKVQI
ISLDEDTSEFSAKSTFDHPYPTTKIMWIPDSKGVYPDLLATSGDYLRVWR
AGEPDTRLECVLNNNKNSDFCAPLTSFDWNEVDPNLVGTSSIDTTCTIWG
LETGQPHARVYVAGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGS
VRMFDLRHLEHSTIIYEDPAHTALLRLAWNKQDPNYLATVAMDSCEVIIL
DVRVPCTPVARLSNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMP
RAIEDPILAYTAAEGEVNQIQWGATQPDWIAICYNKACEILRV*

LD15927.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21273-PA 343 GF21273-PA 1..343 1..343 1854 100 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17516-PA 343 GG17516-PA 1..343 1..343 1854 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17806-PA 343 GH17806-PA 1..343 1..343 1845 99.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
wap-PD 343 CG14614-PD 1..343 1..343 1861 100 Plus
wap-PC 343 CG14614-PC 1..343 1..343 1861 100 Plus
wap-PB 343 CG14614-PB 1..343 1..343 1861 100 Plus
wap-PA 343 CG14614-PA 1..343 1..343 1861 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15149-PA 343 GI15149-PA 1..343 1..343 1845 99.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13429-PA 420 GL13429-PA 78..420 1..343 1858 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13113-PA 420 GA13113-PA 78..420 1..343 1858 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11725-PA 294 GM11725-PA 1..266 1..266 1435 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24427-PA 343 GD24427-PA 1..343 1..343 1854 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19008-PA 343 GJ19008-PA 1..343 1..343 1845 99.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16186-PA 343 GK16186-PA 1..343 1..343 1847 99.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15271-PA 343 GE15271-PA 1..343 1..343 1854 100 Plus

LD15927.hyp Sequence

Translation from 749 to 1780

> LD15927.hyp
MSSTAGKRKEIYKYLAPWPLYSMNWSVRPDKRFRLALGSFIEEYNNKVQI
ISLDEDTSEFSAKSTFDHPYPTTKIMWIPDSKGVYPDLLATSGDYLRVWR
AGEPDTRLECVLNNNKNSDFCAPLTSFDWNEVDPNLVGTSSIDTTCTIWG
LETGQPHARVYVAGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGS
VRMFDLRHLEHSTIIYEDPAHTALLRLAWNKQDPNYLATVAMDSCEVIIL
DVRVPCTPVARLSNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMP
RAIEDPILAYTAAEGEVNQIQWGATQPDWIAICYNKACEILRV*

LD15927.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
wap-PD 343 CG14614-PD 1..343 1..343 1861 100 Plus
wap-PC 343 CG14614-PC 1..343 1..343 1861 100 Plus
wap-PB 343 CG14614-PB 1..343 1..343 1861 100 Plus
wap-PA 343 CG14614-PA 1..343 1..343 1861 100 Plus