Clone LD15939 Report

Search the DGRC for LD15939

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:159
Well:39
Vector:pBS SK-
Associated Gene/TranscriptCG6985-RA
Protein status:LD15939.pep: gold
Preliminary Size:1862
Sequenced Size:1695

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6985 2001-01-01 Release 2 assignment
CG6985 2001-11-29 Blastp of sequenced clone
CG6985 2003-01-01 Sim4 clustering to Release 3
CG6985 2008-04-29 Release 5.5 accounting
CG6985 2008-08-15 Release 5.9 accounting
CG6985 2008-12-18 5.12 accounting

Clone Sequence Records

LD15939.complete Sequence

1695 bp (1695 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069445

> LD15939.complete
TTTTAAATTAACTTATGTATTTACGGTGAACTATACCCGGTAATCCTCTT
CTTTAGCACCATAAAGCGGCGTTCCAAAGCTCCTTCCATGCGCCGCGCTG
CAAAGCGAGAGAGCGAAGCGGCGCCTCCCAAAGAGGAACCACAGTCACCC
TGCTCCTGGCCCAAAAACAATCTACCCAGCGAATGGGGCACCTCAGGGGG
CACCCAAAGCCTGGGACCTCGAGAATTCAGGGCGGGCGAGAATCCCCTCA
AAGATAGCCGCATCTTCCATGTGCTCTGGCGTAATCAGACCACCAAAAAG
CACAAAACGTGGACTGGCAACGGAACGCTGGTGGTCACGGGATCCATAGT
AACATTGAAGGATGACACCGGCAAGGTTGTGGACACCATGACATACTTTA
AGCAGCGGCAACTTCAGGAGAACGATCAGCTGGAAGTAGGCAGCAAGGAT
GTCGAGATTCAGGAGGAGATTAAAACCGTCGAGGAGTGCCTTATTCAGCG
CCAGTTGGAAATAGCCAACTGGTGCCAAAAAATAGATGCCCAGAATGGTT
GTACAGACACATCGCCACCACCTGCTGACAGTGCACCCGTTAGGTCTCAT
CTGCTCAAGAAGATCAAGCGCGAGGCAGATGCCTTTGCTCCACCGCATTT
GGAAATTAGCCAACATAGAGAAGATAAACATGTCTCCTATGCAGCCGCCG
ATTCCAGCACTTCGATGGGAAAGAAAATCTATGAACAAAACACTTTGAAG
ATAGAAAACCCTACCAAGGAGTTCACCCAATCGGAATATCTGTGTCTATT
AACTCCAGCTGAACTGCAGAAAAAAATATTACTCTTTGTTTCTGAATATG
CACAAACATCTAAAACAGAATCGTCTACGTTGAAGGAAATCTTCCAAATT
GTATGTGATCATCCTGTGCTCCTAAAAACTTTGGGTACGAATCCAGTGTT
TAAGGAAATAATGGAGGTACTGGACGCCATACTGCCGCCTTGGCCAAGCA
TGGGACTTTACGACTCCGCCAAGTTCGAGTTTCTACACGTAATGCTGGAT
CACTTAGTGGCGGAGCGAGGCGAGAAGTGCTGCATCTTGGCAAACAGTGA
GGATTGCCTCACCCTGGTCAGGGGATACTGTCAGAGTTATAGTTTGGACC
ATGCGCAGCTAGATGGTCCCCAAAAAGTGAACTTATTTAATTCTCTTGCC
GATGGAGAACCAATGATTGGCTTGATTTTGACCAGTGACTTGTCGGCGCT
TCGAGCTCTTCGCTGCAAACACCTAATTATTTATAATCACAATTCCAGGC
AGCAAGCCAACCAACTGCTGGCCGTTGGAGCAATGGATACCAAAATATAT
ACTCTCATCACAGCCGGAGGTTCTCCGGAGGAGTTGCAGTTCTATGGGCA
TATGGGTGATGATTCTATAGAAGATCTTCAGAATTGCCGCAGCCAGCTTA
TACCGACCGCATCTAATAATCTAGCGGACTGGACCAAAAGTGAGCCACCT
TTTGACCGTGTTTTCTTTGAGGAAACTGCTATATCGGATAGTCTGGATTG
TATTCAACTGGTTTATTCAAGAAAAGTGAGAGTAAAAACTTAAACAAACA
AAACGTTAACTTCAAGAATATAAATGTAAACAAAATTATTTTGTTGAACT
AAATGCTTAGCAGTTGAGTTAACCTGGAAAAAAAAAAAAAAAAAA

LD15939.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6985-RA 1903 CG6985-RA 69..1747 1..1679 8395 100 Plus
CG6985.b 1901 CG6985.b 67..1745 1..1679 8395 100 Plus
CG6985.a 1663 CG6985.a 36..1658 57..1679 8115 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18564718..18565567 13..868 4050 98.5 Plus
chr3R 27901430 chr3R 18565625..18566224 868..1467 2925 99.2 Plus
chr3R 27901430 chr3R 18566394..18566551 1520..1677 790 100 Plus
chr3R 27901430 chr3R 18566284..18566338 1468..1522 275 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:03:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22741230..22742097 1..868 4340 100 Plus
3R 32079331 3R 22742155..22742754 868..1467 3000 100 Plus
3R 32079331 3R 22742924..22743083 1520..1679 800 100 Plus
3R 32079331 3R 22742814..22742868 1468..1522 275 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22482061..22482928 1..868 4340 100 Plus
3R 31820162 3R 22482986..22483585 868..1467 3000 100 Plus
3R 31820162 3R 22483755..22483914 1520..1679 800 100 Plus
3R 31820162 3R 22483645..22483699 1468..1522 275 100 Plus
Blast to na_te.dros performed 2019-03-15 13:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 3434..3488 1596..1651 116 74.6 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 1451..1525 417..488 115 65.3 Plus

LD15939.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:34:38 Download gff for LD15939.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18564709..18565566 1..867 98 -> Plus
chr3R 18565625..18566224 868..1467 99 -> Plus
chr3R 18566284..18566337 1468..1521 100 -> Plus
chr3R 18566396..18566551 1522..1677 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:50:43 Download gff for LD15939.complete
Subject Subject Range Query Range Percent Splice Strand
CG6985-RA 1..1506 88..1593 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:23:48 Download gff for LD15939.complete
Subject Subject Range Query Range Percent Splice Strand
CG6985-RA 1..1506 88..1593 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:04:11 Download gff for LD15939.complete
Subject Subject Range Query Range Percent Splice Strand
CG6985-RA 1..1506 88..1593 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:50:30 Download gff for LD15939.complete
Subject Subject Range Query Range Percent Splice Strand
CG6985-RA 1..1506 88..1593 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:33:10 Download gff for LD15939.complete
Subject Subject Range Query Range Percent Splice Strand
CG6985-RA 1..1506 88..1593 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:59:08 Download gff for LD15939.complete
Subject Subject Range Query Range Percent Splice Strand
CG6985-RA 1..1677 1..1677 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:23:48 Download gff for LD15939.complete
Subject Subject Range Query Range Percent Splice Strand
CG6985-RA 1..1677 1..1677 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:04:11 Download gff for LD15939.complete
Subject Subject Range Query Range Percent Splice Strand
CG6985-RA 81..1757 1..1677 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:50:30 Download gff for LD15939.complete
Subject Subject Range Query Range Percent Splice Strand
CG6985-RA 1..1677 1..1677 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:33:10 Download gff for LD15939.complete
Subject Subject Range Query Range Percent Splice Strand
CG6985-RA 81..1757 1..1677 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:34:38 Download gff for LD15939.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22742814..22742867 1468..1521 100 -> Plus
3R 22742926..22743081 1522..1677 100   Plus
3R 22741230..22742096 1..867 100 -> Plus
3R 22742155..22742754 868..1467 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:34:38 Download gff for LD15939.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22742814..22742867 1468..1521 100 -> Plus
3R 22742926..22743081 1522..1677 100   Plus
3R 22741230..22742096 1..867 100 -> Plus
3R 22742155..22742754 868..1467 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:34:38 Download gff for LD15939.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22742814..22742867 1468..1521 100 -> Plus
3R 22742926..22743081 1522..1677 100   Plus
3R 22741230..22742096 1..867 100 -> Plus
3R 22742155..22742754 868..1467 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:04:11 Download gff for LD15939.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18566952..18567818 1..867 100 -> Plus
arm_3R 18567877..18568476 868..1467 100 -> Plus
arm_3R 18568536..18568589 1468..1521 100 -> Plus
arm_3R 18568648..18568803 1522..1677 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:26:55 Download gff for LD15939.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22482061..22482927 1..867 100 -> Plus
3R 22482986..22483585 868..1467 100 -> Plus
3R 22483645..22483698 1468..1521 100 -> Plus
3R 22483757..22483912 1522..1677 100   Plus

LD15939.hyp Sequence

Translation from 87 to 1592

> LD15939.hyp
MRRAAKRESEAAPPKEEPQSPCSWPKNNLPSEWGTSGGTQSLGPREFRAG
ENPLKDSRIFHVLWRNQTTKKHKTWTGNGTLVVTGSIVTLKDDTGKVVDT
MTYFKQRQLQENDQLEVGSKDVEIQEEIKTVEECLIQRQLEIANWCQKID
AQNGCTDTSPPPADSAPVRSHLLKKIKREADAFAPPHLEISQHREDKHVS
YAAADSSTSMGKKIYEQNTLKIENPTKEFTQSEYLCLLTPAELQKKILLF
VSEYAQTSKTESSTLKEIFQIVCDHPVLLKTLGTNPVFKEIMEVLDAILP
PWPSMGLYDSAKFEFLHVMLDHLVAERGEKCCILANSEDCLTLVRGYCQS
YSLDHAQLDGPQKVNLFNSLADGEPMIGLILTSDLSALRALRCKHLIIYN
HNSRQQANQLLAVGAMDTKIYTLITAGGSPEELQFYGHMGDDSIEDLQNC
RSQLIPTASNNLADWTKSEPPFDRVFFEETAISDSLDCIQLVYSRKVRVK
T*

LD15939.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6985-PA 501 CG6985-PA 1..501 1..501 2629 100 Plus

LD15939.pep Sequence

Translation from 87 to 1592

> LD15939.pep
MRRAAKRESEAAPPKEEPQSPCSWPKNNLPSEWGTSGGTQSLGPREFRAG
ENPLKDSRIFHVLWRNQTTKKHKTWTGNGTLVVTGSIVTLKDDTGKVVDT
MTYFKQRQLQENDQLEVGSKDVEIQEEIKTVEECLIQRQLEIANWCQKID
AQNGCTDTSPPPADSAPVRSHLLKKIKREADAFAPPHLEISQHREDKHVS
YAAADSSTSMGKKIYEQNTLKIENPTKEFTQSEYLCLLTPAELQKKILLF
VSEYAQTSKTESSTLKEIFQIVCDHPVLLKTLGTNPVFKEIMEVLDAILP
PWPSMGLYDSAKFEFLHVMLDHLVAERGEKCCILANSEDCLTLVRGYCQS
YSLDHAQLDGPQKVNLFNSLADGEPMIGLILTSDLSALRALRCKHLIIYN
HNSRQQANQLLAVGAMDTKIYTLITAGGSPEELQFYGHMGDDSIEDLQNC
RSQLIPTASNNLADWTKSEPPFDRVFFEETAISDSLDCIQLVYSRKVRVK
T*

LD15939.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16709-PA 455 GF16709-PA 27..426 14..447 1175 51.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11163-PA 483 GG11163-PA 1..483 1..501 1964 74.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18922-PA 460 GH18922-PA 17..459 30..496 848 40.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6985-PA 501 CG6985-PA 1..501 1..501 2629 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23229-PA 437 GI23229-PA 18..431 29..487 789 37.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23764-PA 468 GL23764-PA 34..468 32..483 1158 51.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20006-PA 490 GA20006-PA 9..485 1..496 1161 47.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26465-PA 503 GM26465-PA 1..503 1..501 2393 88.9 Plus
Dsec\GM11759-PA 185 GM11759-PA 1..160 292..478 712 74.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20981-PA 505 GD20981-PA 1..505 1..501 2435 89.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22890-PA 473 GJ22890-PA 19..463 29..495 820 38.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11471-PA 434 GK11471-PA 9..434 1..501 778 39.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10330-PA 501 GE10330-PA 1..501 1..501 2112 78.8 Plus