Clone LD16038 Report

Search the DGRC for LD16038

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:160
Well:38
Vector:pBS SK-
Associated Gene/TranscriptCG3709-RA
Protein status:LD16038.pep: gold
Preliminary Size:1937
Sequenced Size:1791

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3709 2001-01-01 Release 2 assignment
CG3709 2001-11-29 Blastp of sequenced clone
CG3709 2003-01-01 Sim4 clustering to Release 3
CG3709 2008-04-29 Release 5.5 accounting
CG3709 2008-08-15 Release 5.9 accounting
CG3709 2008-12-18 5.12 accounting

Clone Sequence Records

LD16038.complete Sequence

1791 bp (1791 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069446

> LD16038.complete
CGACAGCTGATAGTGTTGGTTAGCGCGCGAACCGCTTCCACGTTTTGTTT
ATAATTTTAATTACACGAGAAGCTATGAAAAACCAGGATTTGGTGGAATA
TTTAAGGTCGTGCGGGGTGTGCGAAATTTGCCAGCTGCGTTACCTGAAGG
CCAGAGGCGCGGAGTATAGAAACATCAATGAGACTTTGCAAAAGTTGGAT
GTAAAACTAAATGAAAATGTGGAAAACGAAGAGCTTGTTATATCCGAAGG
GAGTCAACCATCTAAAAGGGCCCGTCTGGGCGTGTGTTCAACGTGCCTGG
GTTTATTCTCCAAAGACTTTCAGAATGAGCTGCTCAGCAGCATTTTGGCA
TCGGATTTCGCGAAATACGATTGCCAGAAAATCGTTCTGGCGATTTGTCT
ACCGATGTCGCTTCAGTTGAGACAGCTGGCCATGTGGTTTGCCTTGCGAA
GAAGATTTGGACCATCTATAGACGAAAACAATCCCCCAGACGTGCCTATA
AAAGAGGCTGTCAAGCTGATCCTACACCCTATAATCTGTGAAAAGCTGGC
CAAGGTTTACGATGCCAACGGTCTGATGATCAATATAGACCTCACGCACA
GTCTGGAAGGCGAAGAGGTGGAAAAACTGGTCAAATTAAACAAAGAAGCC
TTTCCCGCCAAGGCCTCGCATCAAAAGCGCATTGAAATTTCGCGAGGTTT
ACTAGAGAAACAGTATCAACCCTCCAAAGTTAAGGCGGAAACCTATGAGA
AATATTTTCAGATACCCTGCTCTAACGTAGAGGAATCTATAAAACTTACT
TCCATAGACCTGCAGGGACCATTGATTTGTGTAGCTGGCAGATATCGAAA
GCTGAGCAGGGAACTTTCACATACTCCCTGGATTTTGAATGGCCAAAGGC
TCATGGAGGACAGTATCGAGGAAATTATAATTAGGCATGTCGGTCCCCAC
TTTACAGAGAAGCTGGGCAAAATCACCTTCATGTCGAGTGGCAGAGAAGA
TGTGGACGTCCGATGCCTGGGGAAAGGAAGGCCTTTTGTTCTAGAAATTC
CAAATGCCAAAAGGAGTTGCCTAACTAAAGATGAAGCCTTTGCGATGGAA
CGGGCTGTGGATGCGTCTGGTATGGTGTCTATACATCACCTCCAAGTCGT
GCCCAGAGAAGAATTAACCCACATAAAGACGGGAGAAGAGCAGAAAAAGA
AATTCTATCGCGCTCTTTGTGCCCTGCAAGAACCAGTATCAGTAAAGATT
CTGGAACAACTGCAAATATCAGCAAGCTTTAACATACAACAAAAGACCCC
CATACGAGTTCTTCATCGTCGTCCATTGCACACGCGTCCCAGAACAATTT
ACAGTGTCACCGCCAAGGTGCATCGTGGAAATCCAAAAGCCTTGATCATC
GATATTGTCACTCAAGCGGGGACTTACATAAAAGAGTTAGTTCATGGCGA
ATTTGGTAGGACCACGCCATCATTGTCCTCTATTATAGGCAAACCCATGG
ATATTCAAGCTCTAGATGTGGTGGGAATCGATTTAGATTGGCCACATGAA
GTAGATAACTCGAAACACAAGGAATAGCGATATTATTGTTAGGTACAAAT
CCATTTAAATGTTAAATGCTTAACACTTAAATTGCAAAAATGCAGAGAAT
AAACAACAACATATGTGGATGAATTTTGATTACTAAGTTCATTATATGTT
TAGTTCAAAATCATCAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD16038.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3709-RA 1720 CG3709-RA 1..1719 1..1719 8595 100 Plus
CG3709.a 3351 CG3709.a 38..231 1..194 970 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 153572..155098 1719..193 7620 99.9 Minus
chr2L 23010047 chr2L 155165..155358 194..1 970 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:03:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 153535..155061 1719..193 7635 100 Minus
2L 23513712 2L 155128..155321 194..1 970 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 153535..155061 1719..193 7635 100 Minus
2L 23513712 2L 155128..155321 194..1 970 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:05:02 has no hits.

LD16038.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:05:59 Download gff for LD16038.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 155165..155358 1..194 100   Minus
chr2L 153576..155096 195..1715 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:50:52 Download gff for LD16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG3709-RA 1..1503 75..1577 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:23:50 Download gff for LD16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG3709-RA 1..1503 75..1577 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:24:52 Download gff for LD16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG3709-RA 1..1503 75..1577 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:50:32 Download gff for LD16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG3709-RA 1..1503 75..1577 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:13:29 Download gff for LD16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG3709-RA 1..1503 75..1577 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:59:11 Download gff for LD16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG3709-RA 1..1715 1..1715 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:23:50 Download gff for LD16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG3709-RA 1..1715 1..1715 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:52 Download gff for LD16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG3709-RA 1..1699 17..1715 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:50:32 Download gff for LD16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG3709-RA 1..1715 1..1715 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:29 Download gff for LD16038.complete
Subject Subject Range Query Range Percent Splice Strand
CG3709-RA 1..1699 17..1715 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:05:59 Download gff for LD16038.complete
Subject Subject Range Query Range Percent Splice Strand
2L 153539..155059 195..1715 100 <- Minus
2L 155128..155321 1..194 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:05:59 Download gff for LD16038.complete
Subject Subject Range Query Range Percent Splice Strand
2L 153539..155059 195..1715 100 <- Minus
2L 155128..155321 1..194 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:05:59 Download gff for LD16038.complete
Subject Subject Range Query Range Percent Splice Strand
2L 153539..155059 195..1715 100 <- Minus
2L 155128..155321 1..194 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:52 Download gff for LD16038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 153539..155059 195..1715 100 <- Minus
arm_2L 155128..155321 1..194 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:26:58 Download gff for LD16038.complete
Subject Subject Range Query Range Percent Splice Strand
2L 153539..155059 195..1715 100 <- Minus
2L 155128..155321 1..194 100   Minus

LD16038.hyp Sequence

Translation from 74 to 1576

> LD16038.hyp
MKNQDLVEYLRSCGVCEICQLRYLKARGAEYRNINETLQKLDVKLNENVE
NEELVISEGSQPSKRARLGVCSTCLGLFSKDFQNELLSSILASDFAKYDC
QKIVLAICLPMSLQLRQLAMWFALRRRFGPSIDENNPPDVPIKEAVKLIL
HPIICEKLAKVYDANGLMINIDLTHSLEGEEVEKLVKLNKEAFPAKASHQ
KRIEISRGLLEKQYQPSKVKAETYEKYFQIPCSNVEESIKLTSIDLQGPL
ICVAGRYRKLSRELSHTPWILNGQRLMEDSIEEIIIRHVGPHFTEKLGKI
TFMSSGREDVDVRCLGKGRPFVLEIPNAKRSCLTKDEAFAMERAVDASGM
VSIHHLQVVPREELTHIKTGEEQKKKFYRALCALQEPVSVKILEQLQISA
SFNIQQKTPIRVLHRRPLHTRPRTIYSVTAKVHRGNPKALIIDIVTQAGT
YIKELVHGEFGRTTPSLSSIIGKPMDIQALDVVGIDLDWPHEVDNSKHKE
*

LD16038.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3709-PA 500 CG3709-PA 1..500 1..500 2575 100 Plus

LD16038.pep Sequence

Translation from 74 to 1576

> LD16038.pep
MKNQDLVEYLRSCGVCEICQLRYLKARGAEYRNINETLQKLDVKLNENVE
NEELVISEGSQPSKRARLGVCSTCLGLFSKDFQNELLSSILASDFAKYDC
QKIVLAICLPMSLQLRQLAMWFALRRRFGPSIDENNPPDVPIKEAVKLIL
HPIICEKLAKVYDANGLMINIDLTHSLEGEEVEKLVKLNKEAFPAKASHQ
KRIEISRGLLEKQYQPSKVKAETYEKYFQIPCSNVEESIKLTSIDLQGPL
ICVAGRYRKLSRELSHTPWILNGQRLMEDSIEEIIIRHVGPHFTEKLGKI
TFMSSGREDVDVRCLGKGRPFVLEIPNAKRSCLTKDEAFAMERAVDASGM
VSIHHLQVVPREELTHIKTGEEQKKKFYRALCALQEPVSVKILEQLQISA
SFNIQQKTPIRVLHRRPLHTRPRTIYSVTAKVHRGNPKALIIDIVTQAGT
YIKELVHGEFGRTTPSLSSIIGKPMDIQALDVVGIDLDWPHEVDNSKHKE
*

LD16038.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24546-PA 493 GF24546-PA 1..493 1..493 2049 78.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24674-PA 501 GG24674-PA 1..500 1..500 2485 93.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10231-PA 498 GH10231-PA 1..494 1..497 1874 69.2 Plus
Dgri\GH25230-PA 52 GH25230-PA 1..45 1..45 159 60 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3709-PA 500 CG3709-PA 1..500 1..500 2575 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15158-PA 497 GI15158-PA 1..493 1..497 1809 69.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19289-PA 498 GL19289-PA 1..495 1..496 1980 73.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17631-PA 498 GA17631-PA 1..495 1..496 1979 73.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16693-PA 500 GM16693-PA 1..500 1..500 2583 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22981-PA 500 GD22981-PA 1..500 1..500 2581 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17254-PA 497 GJ17254-PA 1..495 1..497 1916 70.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23763-PA 497 GK23763-PA 1..495 1..497 1817 68.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16383-PA 500 GE16383-PA 1..500 1..500 2438 93.2 Plus