BDGP Sequence Production Resources |
Search the DGRC for LD16074
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 160 |
Well: | 74 |
Vector: | pBS SK- |
Associated Gene/Transcript | Snp-RD |
Protein status: | LD16074.pep: gold |
Preliminary Size: | 1996 |
Sequenced Size: | 1891 |
Gene | Date | Evidence |
---|---|---|
CG6393 | 2001-01-01 | Release 2 assignment |
CG6393 | 2001-10-10 | Blastp of sequenced clone |
CG6393 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6393 | 2008-04-29 | Release 5.5 accounting |
CG42257 | 2008-08-15 | Release 5.9 accounting |
CG42257 | 2008-12-18 | 5.12 accounting |
1891 bp (1891 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061211
> LD16074.complete AGCGAGTTACTACCGAATATTAGATGCGGACTGCAAGCGCAGCTATACGA GAATATACCGACAGGCACGCAAAATATGCAAATACCAGGAGTGCATCTCT ATTGACCGGTCAAATACTCGGCTTGGCGGATAGTGCATTTGCAGTTGCAA TTTCATCAATCGCCAAATGCACTTGACTGAAAGGCTGTACAAAAAAACAA AGAGAAAAAACCCAGTGTGCGTGCGGGAATATGTAAAAAAAAAACGAGTT AAATAAATAGCTAAATAACAAGCAGAAAGCAGAACGTAAGTATCGAAAAA GCGCAGTGTTTTTGTTGTGCCGGCTGAAATAAATTCGATTGTGTGCGCGC GCGTTTGTTTGTGTGTCGGCATGTGCGTGTGAGTGAGCAGACAACAAAAG GAATTCGGCTCGCTCAACTTCTTCCTAGTTTACCGTTACTTGCACTGCCA AAATCGCAAAAAATAAGGGGAATAGGGAGATAAATAAATAAGCCGACGAA TTTCGAATAGCATAAATAGTAGCTCCTGCCAAAAAAAAAAAGAAGAAAAA TCAGAGAAACGTCAGTCAAATCGAAAAACAGAAATGGCCTTGATAAAACT AGCAAGGCAACTGGGCCTGATCGATACCATATACGTCGACGGAGCTCGCC CAGATCCAAATAACGATCCCGAGGAGTCGTTCAACGAGGACGAAGTCACA GAGGCCAACTCAGTGCCCGCCAAAAGCAAGAAGTCAAGGAAGTCCAAGCG TCTAGCCATGCAACCCTACTCATATGTGATTGCCGTGGACTTTGAGGCAA CCTGCTGGGAAAAGCAGGCTCCGCCAGAGTGGCGAGAAGCGGAGATAATT GAATTCCCAGCAGTGCTTGTTAACCTTAAGACAGGAAAGATCGAGGCGGA ATTCCACCAGTACATCCTTCCCTTCGAGTCGCCGCGCTTGAGCGCCTACT GCACGGAGCTGACGGGCATCCAGCAGAAGACTGTGGACAGCGGAATGCCG CTGCGGACGGCGATCGTGATGTTTAACGAATGGCTGCGCAATGAGATGCG AGCCCGCAACCTTACCTTGCCCAAGATGAACAAGTCAAACATACTGGGCA ACTGTGCATTCGTCACCTGGACGGACTGGGACTTCGGCATCTGCTTGGCG AAGGAGTGCAGCCGCAAAGGGATACGCAAGCCGGCCTACTTTAATCAGTG GATCGACGTGCGGGCCATTTATCGGTCGTGGTACAAGTACCGTCCGTGCA ACTTCACGGATGCCCTGTCGCACGTGGGTCTGGCATTCGAGGGCAAGGCC CACTCGGGGATCGACGATGCCAAGAATCTGGGCGCACTCATGTGCAAGAT GGTGCGCGACGGGGCGCTATTCTCGATCACCAAAGATCTGACGCCATATC AGCAGCTTAATCCCAGGTTCGTGTTGTGAGTTCCAGCGGCCAGCAATCCC TCCAAAACTTGAAACGGAACGCAGAATATCCATTTAGTTACTGGATTTTA TTTAAATATTAATATAAAACGCAATGAAAGGATTGGTATGGAGAATAACT AAAGAGAACATGCACGAAAATTTAAATTTCTTCTTTTTTTTTTTTTTGCC CTGATTTTATATTTTATTGTAACGGCAATTGATAAGACTTGAACAATTCG AAGCATCGCAGCGATCATACATACAAATAAATTTATAAATAGCTATAAAT ATGGCTTAGAGCATACATATTTTTCTACCATTCATACTTGATAATGCTTA GTTATAGTCTACAATACGGAATGCAATACTTATCTTAACGACTTACACCG CCTACCATTTAGGAGATAAATTAATAAAACGACAATAGCTACATATAAAT ATGGGCTGTTAATTGGGAAATCTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42257-RD | 1971 | CG42257-RD | 60..1934 | 1..1875 | 9375 | 100 | Plus |
CG42257-RE | 1702 | CG42257-RE | 397..1665 | 607..1875 | 6345 | 100 | Plus |
CG42257.b | 1849 | CG42257.b | 628..1849 | 652..1873 | 6110 | 100 | Plus |
CG42257.b | 1849 | CG42257.b | 24..629 | 1..606 | 3030 | 100 | Plus |
CG42257-RE | 1702 | CG42257-RE | 112..397 | 1..286 | 1430 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 17955110..17956138 | 851..1873 | 4960 | 99 | Plus |
chr2R | 21145070 | chr2R | 17947353..17947958 | 1..607 | 2955 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 17954800..17955046 | 605..851 | 1175 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 22068735..22069759 | 851..1875 | 5125 | 100 | Plus |
2R | 25286936 | 2R | 22060976..22061582 | 1..607 | 3035 | 100 | Plus |
2R | 25286936 | 2R | 22068425..22068671 | 605..851 | 1235 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 22069934..22070958 | 851..1875 | 5125 | 100 | Plus |
2R | 25260384 | 2R | 22062175..22062781 | 1..607 | 3035 | 100 | Plus |
2R | 25260384 | 2R | 22069624..22069870 | 605..851 | 1235 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TAHRE | 10463 | TAHRE OSV 10463bp | 2710..2776 | 1773..1839 | 119 | 64.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 17947353..17947957 | 1..606 | 99 | -> | Plus |
chr2R | 17954802..17955046 | 607..851 | 98 | -> | Plus |
chr2R | 17955111..17956138 | 852..1873 | 96 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42257-RD | 1..846 | 584..1429 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snp-RD | 1..846 | 584..1429 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snp-RD | 1..846 | 584..1429 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42257-RD | 1..846 | 584..1429 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snp-RD | 1..846 | 584..1429 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42257-RD | 24..1896 | 1..1873 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snp-RD | 24..1896 | 1..1873 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snp-RD | 27..1899 | 1..1873 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42257-RD | 24..1896 | 1..1873 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snp-RD | 27..1899 | 1..1873 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22060976..22061581 | 1..606 | 100 | -> | Plus |
2R | 22068427..22068671 | 607..851 | 100 | -> | Plus |
2R | 22068736..22069757 | 852..1873 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22060976..22061581 | 1..606 | 100 | -> | Plus |
2R | 22068427..22068671 | 607..851 | 100 | -> | Plus |
2R | 22068736..22069757 | 852..1873 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22060976..22061581 | 1..606 | 100 | -> | Plus |
2R | 22068427..22068671 | 607..851 | 100 | -> | Plus |
2R | 22068736..22069757 | 852..1873 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 17948481..17949086 | 1..606 | 100 | -> | Plus |
arm_2R | 17955932..17956176 | 607..851 | 100 | -> | Plus |
arm_2R | 17956241..17957262 | 852..1873 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22062175..22062780 | 1..606 | 100 | -> | Plus |
2R | 22069626..22069870 | 607..851 | 100 | -> | Plus |
2R | 22069935..22070956 | 852..1873 | 100 | Plus |
Translation from 583 to 1428
> LD16074.hyp MALIKLARQLGLIDTIYVDGARPDPNNDPEESFNEDEVTEANSVPAKSKK SRKSKRLAMQPYSYVIAVDFEATCWEKQAPPEWREAEIIEFPAVLVNLKT GKIEAEFHQYILPFESPRLSAYCTELTGIQQKTVDSGMPLRTAIVMFNEW LRNEMRARNLTLPKMNKSNILGNCAFVTWTDWDFGICLAKECSRKGIRKP AYFNQWIDVRAIYRSWYKYRPCNFTDALSHVGLAFEGKAHSGIDDAKNLG ALMCKMVRDGALFSITKDLTPYQQLNPRFVL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Snp-PD | 281 | CG44248-PD | 1..281 | 1..281 | 1497 | 100 | Plus |
Snp-PG | 223 | CG44248-PG | 1..223 | 59..281 | 1207 | 100 | Plus |
Snp-PF | 223 | CG44248-PF | 1..223 | 59..281 | 1207 | 100 | Plus |
Snp-PE | 223 | CG44248-PE | 1..223 | 59..281 | 1207 | 100 | Plus |
Translation from 583 to 1428
> LD16074.pep MALIKLARQLGLIDTIYVDGARPDPNNDPEESFNEDEVTEANSVPAKSKK SRKSKRLAMQPYSYVIAVDFEATCWEKQAPPEWREAEIIEFPAVLVNLKT GKIEAEFHQYILPFESPRLSAYCTELTGIQQKTVDSGMPLRTAIVMFNEW LRNEMRARNLTLPKMNKSNILGNCAFVTWTDWDFGICLAKECSRKGIRKP AYFNQWIDVRAIYRSWYKYRPCNFTDALSHVGLAFEGKAHSGIDDAKNLG ALMCKMVRDGALFSITKDLTPYQQLNPRFVL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13284-PA | 284 | GF13284-PA | 11..284 | 9..281 | 1313 | 86.5 | Plus |
Dana\GF13954-PA | 282 | GF13954-PA | 1..282 | 1..281 | 1281 | 83.7 | Plus |
Dana\GF20552-PA | 159 | GF20552-PA | 9..159 | 131..281 | 711 | 84.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22157-PA | 223 | GG22157-PA | 1..223 | 59..281 | 1123 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20546-PA | 288 | GH20546-PA | 5..288 | 3..281 | 1241 | 81.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Snp-PD | 281 | CG44248-PD | 1..281 | 1..281 | 1497 | 100 | Plus |
Snp-PG | 223 | CG44248-PG | 1..223 | 59..281 | 1207 | 100 | Plus |
Snp-PF | 223 | CG44248-PF | 1..223 | 59..281 | 1207 | 100 | Plus |
Snp-PE | 223 | CG44248-PE | 1..223 | 59..281 | 1207 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18816-PA | 223 | GI18816-PA | 1..223 | 59..281 | 1056 | 83 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16972-PA | 221 | GL16972-PA | 1..221 | 59..279 | 1055 | 84.6 | Plus |
Dper\GL14411-PA | 223 | GL14411-PA | 1..218 | 59..276 | 856 | 68.8 | Plus |
Dper\GL14412-PA | 223 | GL14412-PA | 1..218 | 59..276 | 856 | 68.8 | Plus |
Dper\GL14410-PA | 223 | GL14410-PA | 1..218 | 59..276 | 856 | 68.8 | Plus |
Dper\GL14409-PA | 223 | GL14409-PA | 1..218 | 59..276 | 853 | 68.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25009-PB | 280 | GA25009-PB | 1..280 | 1..279 | 1287 | 83.6 | Plus |
Dpse\GA25009-PA | 221 | GA25009-PA | 1..221 | 59..279 | 1055 | 84.6 | Plus |
Dpse\GA23278-PA | 223 | GA23278-PA | 1..218 | 59..276 | 864 | 68.8 | Plus |
Dpse\GA23277-PA | 223 | GA23277-PA | 1..218 | 59..276 | 861 | 68.3 | Plus |
Dpse\GA23279-PA | 223 | GA23279-PA | 1..218 | 59..276 | 851 | 67.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15878-PA | 281 | GM15878-PA | 1..281 | 1..281 | 1384 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11641-PA | 281 | GD11641-PA | 1..281 | 1..281 | 1384 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21843-PA | 286 | GJ21843-PA | 1..286 | 1..281 | 1291 | 81.8 | Plus |
Dvir\GJ19701-PA | 71 | GJ19701-PA | 9..66 | 190..252 | 181 | 57.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15944-PA | 281 | GK15944-PA | 5..281 | 9..281 | 1225 | 81.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12237-PA | 223 | GE12237-PA | 1..223 | 59..281 | 1137 | 91.5 | Plus |