Clone LD16074 Report

Search the DGRC for LD16074

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:160
Well:74
Vector:pBS SK-
Associated Gene/TranscriptSnp-RD
Protein status:LD16074.pep: gold
Preliminary Size:1996
Sequenced Size:1891

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6393 2001-01-01 Release 2 assignment
CG6393 2001-10-10 Blastp of sequenced clone
CG6393 2003-01-01 Sim4 clustering to Release 3
CG6393 2008-04-29 Release 5.5 accounting
CG42257 2008-08-15 Release 5.9 accounting
CG42257 2008-12-18 5.12 accounting

Clone Sequence Records

LD16074.complete Sequence

1891 bp (1891 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061211

> LD16074.complete
AGCGAGTTACTACCGAATATTAGATGCGGACTGCAAGCGCAGCTATACGA
GAATATACCGACAGGCACGCAAAATATGCAAATACCAGGAGTGCATCTCT
ATTGACCGGTCAAATACTCGGCTTGGCGGATAGTGCATTTGCAGTTGCAA
TTTCATCAATCGCCAAATGCACTTGACTGAAAGGCTGTACAAAAAAACAA
AGAGAAAAAACCCAGTGTGCGTGCGGGAATATGTAAAAAAAAAACGAGTT
AAATAAATAGCTAAATAACAAGCAGAAAGCAGAACGTAAGTATCGAAAAA
GCGCAGTGTTTTTGTTGTGCCGGCTGAAATAAATTCGATTGTGTGCGCGC
GCGTTTGTTTGTGTGTCGGCATGTGCGTGTGAGTGAGCAGACAACAAAAG
GAATTCGGCTCGCTCAACTTCTTCCTAGTTTACCGTTACTTGCACTGCCA
AAATCGCAAAAAATAAGGGGAATAGGGAGATAAATAAATAAGCCGACGAA
TTTCGAATAGCATAAATAGTAGCTCCTGCCAAAAAAAAAAAGAAGAAAAA
TCAGAGAAACGTCAGTCAAATCGAAAAACAGAAATGGCCTTGATAAAACT
AGCAAGGCAACTGGGCCTGATCGATACCATATACGTCGACGGAGCTCGCC
CAGATCCAAATAACGATCCCGAGGAGTCGTTCAACGAGGACGAAGTCACA
GAGGCCAACTCAGTGCCCGCCAAAAGCAAGAAGTCAAGGAAGTCCAAGCG
TCTAGCCATGCAACCCTACTCATATGTGATTGCCGTGGACTTTGAGGCAA
CCTGCTGGGAAAAGCAGGCTCCGCCAGAGTGGCGAGAAGCGGAGATAATT
GAATTCCCAGCAGTGCTTGTTAACCTTAAGACAGGAAAGATCGAGGCGGA
ATTCCACCAGTACATCCTTCCCTTCGAGTCGCCGCGCTTGAGCGCCTACT
GCACGGAGCTGACGGGCATCCAGCAGAAGACTGTGGACAGCGGAATGCCG
CTGCGGACGGCGATCGTGATGTTTAACGAATGGCTGCGCAATGAGATGCG
AGCCCGCAACCTTACCTTGCCCAAGATGAACAAGTCAAACATACTGGGCA
ACTGTGCATTCGTCACCTGGACGGACTGGGACTTCGGCATCTGCTTGGCG
AAGGAGTGCAGCCGCAAAGGGATACGCAAGCCGGCCTACTTTAATCAGTG
GATCGACGTGCGGGCCATTTATCGGTCGTGGTACAAGTACCGTCCGTGCA
ACTTCACGGATGCCCTGTCGCACGTGGGTCTGGCATTCGAGGGCAAGGCC
CACTCGGGGATCGACGATGCCAAGAATCTGGGCGCACTCATGTGCAAGAT
GGTGCGCGACGGGGCGCTATTCTCGATCACCAAAGATCTGACGCCATATC
AGCAGCTTAATCCCAGGTTCGTGTTGTGAGTTCCAGCGGCCAGCAATCCC
TCCAAAACTTGAAACGGAACGCAGAATATCCATTTAGTTACTGGATTTTA
TTTAAATATTAATATAAAACGCAATGAAAGGATTGGTATGGAGAATAACT
AAAGAGAACATGCACGAAAATTTAAATTTCTTCTTTTTTTTTTTTTTGCC
CTGATTTTATATTTTATTGTAACGGCAATTGATAAGACTTGAACAATTCG
AAGCATCGCAGCGATCATACATACAAATAAATTTATAAATAGCTATAAAT
ATGGCTTAGAGCATACATATTTTTCTACCATTCATACTTGATAATGCTTA
GTTATAGTCTACAATACGGAATGCAATACTTATCTTAACGACTTACACCG
CCTACCATTTAGGAGATAAATTAATAAAACGACAATAGCTACATATAAAT
ATGGGCTGTTAATTGGGAAATCTAAAAAAAAAAAAAAAAAA

LD16074.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG42257-RD 1971 CG42257-RD 60..1934 1..1875 9375 100 Plus
CG42257-RE 1702 CG42257-RE 397..1665 607..1875 6345 100 Plus
CG42257.b 1849 CG42257.b 628..1849 652..1873 6110 100 Plus
CG42257.b 1849 CG42257.b 24..629 1..606 3030 100 Plus
CG42257-RE 1702 CG42257-RE 112..397 1..286 1430 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17955110..17956138 851..1873 4960 99 Plus
chr2R 21145070 chr2R 17947353..17947958 1..607 2955 99.5 Plus
chr2R 21145070 chr2R 17954800..17955046 605..851 1175 98.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:03:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22068735..22069759 851..1875 5125 100 Plus
2R 25286936 2R 22060976..22061582 1..607 3035 100 Plus
2R 25286936 2R 22068425..22068671 605..851 1235 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22069934..22070958 851..1875 5125 100 Plus
2R 25260384 2R 22062175..22062781 1..607 3035 100 Plus
2R 25260384 2R 22069624..22069870 605..851 1235 100 Plus
Blast to na_te.dros performed 2019-03-15 18:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 2710..2776 1773..1839 119 64.2 Plus

LD16074.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:25:32 Download gff for LD16074.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17947353..17947957 1..606 99 -> Plus
chr2R 17954802..17955046 607..851 98 -> Plus
chr2R 17955111..17956138 852..1873 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:50:56 Download gff for LD16074.complete
Subject Subject Range Query Range Percent Splice Strand
CG42257-RD 1..846 584..1429 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:46:23 Download gff for LD16074.complete
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 1..846 584..1429 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:02:01 Download gff for LD16074.complete
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 1..846 584..1429 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:15:06 Download gff for LD16074.complete
Subject Subject Range Query Range Percent Splice Strand
CG42257-RD 1..846 584..1429 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:20 Download gff for LD16074.complete
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 1..846 584..1429 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:29:50 Download gff for LD16074.complete
Subject Subject Range Query Range Percent Splice Strand
CG42257-RD 24..1896 1..1873 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:46:23 Download gff for LD16074.complete
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 24..1896 1..1873 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:02:01 Download gff for LD16074.complete
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 27..1899 1..1873 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:15:07 Download gff for LD16074.complete
Subject Subject Range Query Range Percent Splice Strand
CG42257-RD 24..1896 1..1873 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:20 Download gff for LD16074.complete
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 27..1899 1..1873 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:32 Download gff for LD16074.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22060976..22061581 1..606 100 -> Plus
2R 22068427..22068671 607..851 100 -> Plus
2R 22068736..22069757 852..1873 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:32 Download gff for LD16074.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22060976..22061581 1..606 100 -> Plus
2R 22068427..22068671 607..851 100 -> Plus
2R 22068736..22069757 852..1873 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:32 Download gff for LD16074.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22060976..22061581 1..606 100 -> Plus
2R 22068427..22068671 607..851 100 -> Plus
2R 22068736..22069757 852..1873 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:02:01 Download gff for LD16074.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17948481..17949086 1..606 100 -> Plus
arm_2R 17955932..17956176 607..851 100 -> Plus
arm_2R 17956241..17957262 852..1873 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:51:57 Download gff for LD16074.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22062175..22062780 1..606 100 -> Plus
2R 22069626..22069870 607..851 100 -> Plus
2R 22069935..22070956 852..1873 100   Plus

LD16074.hyp Sequence

Translation from 583 to 1428

> LD16074.hyp
MALIKLARQLGLIDTIYVDGARPDPNNDPEESFNEDEVTEANSVPAKSKK
SRKSKRLAMQPYSYVIAVDFEATCWEKQAPPEWREAEIIEFPAVLVNLKT
GKIEAEFHQYILPFESPRLSAYCTELTGIQQKTVDSGMPLRTAIVMFNEW
LRNEMRARNLTLPKMNKSNILGNCAFVTWTDWDFGICLAKECSRKGIRKP
AYFNQWIDVRAIYRSWYKYRPCNFTDALSHVGLAFEGKAHSGIDDAKNLG
ALMCKMVRDGALFSITKDLTPYQQLNPRFVL*

LD16074.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
Snp-PD 281 CG44248-PD 1..281 1..281 1497 100 Plus
Snp-PG 223 CG44248-PG 1..223 59..281 1207 100 Plus
Snp-PF 223 CG44248-PF 1..223 59..281 1207 100 Plus
Snp-PE 223 CG44248-PE 1..223 59..281 1207 100 Plus

LD16074.pep Sequence

Translation from 583 to 1428

> LD16074.pep
MALIKLARQLGLIDTIYVDGARPDPNNDPEESFNEDEVTEANSVPAKSKK
SRKSKRLAMQPYSYVIAVDFEATCWEKQAPPEWREAEIIEFPAVLVNLKT
GKIEAEFHQYILPFESPRLSAYCTELTGIQQKTVDSGMPLRTAIVMFNEW
LRNEMRARNLTLPKMNKSNILGNCAFVTWTDWDFGICLAKECSRKGIRKP
AYFNQWIDVRAIYRSWYKYRPCNFTDALSHVGLAFEGKAHSGIDDAKNLG
ALMCKMVRDGALFSITKDLTPYQQLNPRFVL*

LD16074.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13284-PA 284 GF13284-PA 11..284 9..281 1313 86.5 Plus
Dana\GF13954-PA 282 GF13954-PA 1..282 1..281 1281 83.7 Plus
Dana\GF20552-PA 159 GF20552-PA 9..159 131..281 711 84.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22157-PA 223 GG22157-PA 1..223 59..281 1123 89.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20546-PA 288 GH20546-PA 5..288 3..281 1241 81.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
Snp-PD 281 CG44248-PD 1..281 1..281 1497 100 Plus
Snp-PG 223 CG44248-PG 1..223 59..281 1207 100 Plus
Snp-PF 223 CG44248-PF 1..223 59..281 1207 100 Plus
Snp-PE 223 CG44248-PE 1..223 59..281 1207 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18816-PA 223 GI18816-PA 1..223 59..281 1056 83 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16972-PA 221 GL16972-PA 1..221 59..279 1055 84.6 Plus
Dper\GL14411-PA 223 GL14411-PA 1..218 59..276 856 68.8 Plus
Dper\GL14412-PA 223 GL14412-PA 1..218 59..276 856 68.8 Plus
Dper\GL14410-PA 223 GL14410-PA 1..218 59..276 856 68.8 Plus
Dper\GL14409-PA 223 GL14409-PA 1..218 59..276 853 68.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25009-PB 280 GA25009-PB 1..280 1..279 1287 83.6 Plus
Dpse\GA25009-PA 221 GA25009-PA 1..221 59..279 1055 84.6 Plus
Dpse\GA23278-PA 223 GA23278-PA 1..218 59..276 864 68.8 Plus
Dpse\GA23277-PA 223 GA23277-PA 1..218 59..276 861 68.3 Plus
Dpse\GA23279-PA 223 GA23279-PA 1..218 59..276 851 67.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15878-PA 281 GM15878-PA 1..281 1..281 1384 93.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11641-PA 281 GD11641-PA 1..281 1..281 1384 93.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21843-PA 286 GJ21843-PA 1..286 1..281 1291 81.8 Plus
Dvir\GJ19701-PA 71 GJ19701-PA 9..66 190..252 181 57.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15944-PA 281 GK15944-PA 5..281 9..281 1225 81.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12237-PA 223 GE12237-PA 1..223 59..281 1137 91.5 Plus