BDGP Sequence Production Resources |
Search the DGRC for LD16109
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 161 |
Well: | 9 |
Vector: | pBS SK- |
Associated Gene/Transcript | Pino-RA |
Protein status: | LD16109.pep: gold |
Preliminary Size: | 2118 |
Sequenced Size: | 2099 |
Gene | Date | Evidence |
---|---|---|
CG4710 | 2001-01-01 | Release 2 assignment |
CG4710 | 2001-11-29 | Blastp of sequenced clone |
smi21F | 2008-04-29 | Release 5.5 accounting |
smi21F | 2008-08-15 | Release 5.9 accounting |
Pino | 2008-12-18 | 5.12 accounting |
2099 bp (2099 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069447
> LD16109.complete TCGAGGTGCTTTGCTTGCCCACTTGGTCTTTCGGCTCTGGAGAAAACTAC TCGCATCGAATTGAATTGAATCTGGGGAAAATCAGTCCGAGTCCCAGCTA CACAGTTCAGTTTCGCTTCCCAGTCCAACTATAAAAGTGCGCTGCAGTCC CAGTCAAACAACTGCATTCAGATACAAACTATTGCCAATTGCATTTTCAT GAGCTAACTGTCTCGCATCGCGTGTGAAAAGTTACAAACAACACAAAAAC AATTGCCAACGGTTAATGTTAATGTCCAGGCAATTATAAAAAGCAATTCG ATTGTCTAGCTTACGCAAGGCCAACTACAATTACCAATAAATACGGCGAA TAAAGCAGCACAGGAATCCCAATTTGGATTTATTAATAGCGCTGTATAAA AAATCATAAAACAACAACCGTTGCTGTAAATAACCCAACAAATTGCCATC AGCAGCCAATATGTCGATCGCCAGTGTTCACGGTCCCCAAATCGCCGACA TCTGCAGTCCCCTGTCGCATCACAATCTCGGTCTGTCTGCCTCGCTGCCA GATCTGGTGGGCAGTCCCCTGGAGATCAGCATGGACAACGTGCTGACCAT TGAGGAGCTGCGCCAGCACATGGGCTCCTGCTTCACCTGCGGCGTCTCCT GGACGGACGACCATGTGTCCCTCGACTGCAGCGAATGCGGTGGCTACAGC CTGGAGCGTCCCTGTCCCCTGTGCGACGGCCAGTGCGGTGTCCAATGGAA ACGTGATTTCGCCATGTCCCATGCCTGCAGTCAAGCTCGCTGGGTGGGCG TGTGCATCAGCTACCCGGAAGTCGTGGCCGGAGTCCAGTTGCCCGTGGGA GCAGGCGCTGGAGCCGCCACCTCGTGTGCCGCTGCCGCTGCGAATCAACT GCGCCTGGCCCAGGAGCTGTGCTCCCGCCTGGAACAGCTGTCCACGTCGA CGGCGAGCAAAAGCGGTCGCATCTAGAGCGCGGAATCCCCGCCCAGTTCC TTCGACAGCCAGACTGCAAACACGCCTCCACATCAGCCACACCCCCGCAC ACAGCCATTCATCCGGAAAGCAGAAGCTGAAGCAGAAGCAGAAAGCTGGA GCGGAATTAGCTCCACCTGCACACCCAAACACACAGTCTCTCACCCGTAA TTTAGGGCCTAATTACTAAGCTTCTTAGCTGTTAGTTATTATTGTTGTGC AGCGTTGAGTCTTTAGTTCTTTGTTTAGCACACACAATCTTTTGTTTTAT GATTTCACCGGTATCGTTTTCGTTCCGATTCGTTGTGTGACAGTGCAAAT ATTTAGCAACTAAGTTAGTTCCTTTGTTTACCTTCCAATGGCACCATTTG GTTTGCGCACATTACCTGTTCTATCCAGGAGAAGACTTCTTTCTGCCTAG ACTTAAGCCGAGTTTAGGCAATGCAGTGATAACGGTGATATTAGCCAGAA AGAATCGTGAGCAAATAGTGAATTTACATGATGTAGCAAATGTCTAACGA TAGCTATAGATCGACATGAGATGATCATTTTTGTATAACCCCACACGCAC ACACATCAAACAACCCGTGTAATCGTGTAGAGATTGTTGTTAACAATTAG TTAGTTGTTGCTTTCTGCCTTGTGTCAAAGCTTGTTCGAAGCGAGGAGCT CCGCGGGCACAGATCAAAGCTAGCTGCGATGGTGCCGGCGGAGGGTTCAG TGAGCGAAGAAAGAAGAATCTTCCAGATTGCCTAATGTGCATAGTGCTCA ACAAAGTAACTACAGGATTGAACAATTTCTCCAAGGGAAAAGTGAAAGCG CATAGAAATGAGCAATTAAGGATGTGAAAACACGCACAAGGAAACAATTG AAAAGCATTACTCAAAGTTGAAGATTTTCTGTGAAAATCCATATGACATG TAGAAGTTTATACCTAATATATACACCTATATATTATATACCACATAAAT CTGCATACAATATACATAAATATATATATATTTTTAATGTAGAGATATGT TTTGTAAAAGACAAAGGCATATTTTTAAAATTAAATACCTAAACTATGCA AAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 1114506..1115798 | 2056..766 | 6295 | 99.3 | Minus |
chr2L | 23010047 | chr2L | 1118424..1118866 | 443..1 | 2155 | 99.1 | Minus |
chr2L | 23010047 | chr2L | 1116293..1116542 | 766..517 | 1250 | 100 | Minus |
chr2L | 23010047 | chr2L | 1117297..1117370 | 517..444 | 370 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 1114652..1115944 | 2058..766 | 6465 | 100 | Minus |
2L | 23513712 | 2L | 1118566..1119008 | 443..1 | 2215 | 100 | Minus |
2L | 23513712 | 2L | 1116441..1116690 | 766..517 | 1250 | 100 | Minus |
2L | 23513712 | 2L | 1117443..1117516 | 517..444 | 370 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 1114652..1115944 | 2058..766 | 6465 | 100 | Minus |
2L | 23513712 | 2L | 1118566..1119008 | 443..1 | 2215 | 100 | Minus |
2L | 23513712 | 2L | 1116441..1116690 | 766..517 | 1250 | 100 | Minus |
2L | 23513712 | 2L | 1117443..1117516 | 517..444 | 370 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 483..663 | 1822..2009 | 131 | 58.5 | Plus |
412 | 7567 | 412 412 7567bp | 1812..1869 | 1998..1937 | 119 | 72.6 | Minus |
TAHRE | 10463 | TAHRE OSV 10463bp | 9369..9424 | 1294..1237 | 114 | 69 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 1114506..1114582 | 1980..2056 | 100 | == | Minus |
chr2L | 1114656..1115797 | 767..1908 | 99 | <- | Minus |
chr2L | 1116293..1116542 | 517..766 | 100 | <- | Minus |
chr2L | 1117298..1117370 | 444..516 | 100 | <- | Minus |
chr2L | 1118424..1118866 | 1..443 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pino-RB | 213..750 | 439..976 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pino-RB | 213..750 | 439..976 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pino-RB | 213..750 | 439..976 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smi21F-RB | 213..750 | 439..976 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pino-RB | 213..750 | 439..976 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pino-RA | 132..2187 | 1..2056 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pino-RA | 132..2187 | 1..2056 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pino-RA | 24..2079 | 1..2056 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
smi21F-RA | 132..2187 | 1..2056 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pino-RA | 24..2079 | 1..2056 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1117444..1117516 | 444..516 | 100 | <- | Minus |
2L | 1118566..1119008 | 1..443 | 100 | Minus | |
2L | 1114654..1115943 | 767..2056 | 100 | <- | Minus |
2L | 1116441..1116690 | 517..766 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1117444..1117516 | 444..516 | 100 | <- | Minus |
2L | 1118566..1119008 | 1..443 | 100 | Minus | |
2L | 1114654..1115943 | 767..2056 | 100 | <- | Minus |
2L | 1116441..1116690 | 517..766 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1117444..1117516 | 444..516 | 100 | <- | Minus |
2L | 1118566..1119008 | 1..443 | 100 | Minus | |
2L | 1114654..1115943 | 767..2056 | 100 | <- | Minus |
2L | 1116441..1116690 | 517..766 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 1114654..1115943 | 767..2056 | 100 | <- | Minus |
arm_2L | 1116441..1116690 | 517..766 | 100 | <- | Minus |
arm_2L | 1117444..1117516 | 444..516 | 100 | <- | Minus |
arm_2L | 1118566..1119008 | 1..443 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1114654..1115943 | 767..2056 | 100 | <- | Minus |
2L | 1116441..1116690 | 517..766 | 100 | <- | Minus |
2L | 1117444..1117516 | 444..516 | 100 | <- | Minus |
2L | 1118566..1119008 | 1..443 | 100 | Minus |
Translation from 460 to 975
> LD16109.hyp MSIASVHGPQIADICSPLSHHNLGLSASLPDLVGSPLEISMDNVLTIEEL RQHMGSCFTCGVSWTDDHVSLDCSECGGYSLERPCPLCDGQCGVQWKRDF AMSHACSQARWVGVCISYPEVVAGVQLPVGAGAGAATSCAAAAANQLRLA QELCSRLEQLSTSTASKSGRI*
Translation from 460 to 975
> LD16109.pep MSIASVHGPQIADICSPLSHHNLGLSASLPDLVGSPLEISMDNVLTIEEL RQHMGSCFTCGVSWTDDHVSLDCSECGGYSLERPCPLCDGQCGVQWKRDF AMSHACSQARWVGVCISYPEVVAGVQLPVGAGAGAATSCAAAAANQLRLA QELCSRLEQLSTSTASKSGRI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14736-PA | 204 | GF14736-PA | 135..204 | 102..171 | 264 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24613-PA | 249 | GG24613-PA | 79..249 | 1..171 | 885 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10567-PA | 169 | GH10567-PA | 1..169 | 1..171 | 701 | 83.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pino-PC | 171 | CG4710-PC | 1..171 | 1..171 | 911 | 100 | Plus |
Pino-PA | 171 | CG4710-PA | 1..171 | 1..171 | 911 | 100 | Plus |
Pino-PB | 249 | CG4710-PB | 79..249 | 1..171 | 911 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21963-PA | 261 | GI21963-PA | 84..258 | 1..171 | 710 | 82.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15076-PA | 256 | GL15076-PA | 93..255 | 6..170 | 817 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25452-PA | 169 | GA25452-PA | 1..168 | 1..170 | 833 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16627-PA | 246 | GM16627-PA | 76..246 | 1..171 | 884 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22927-PA | 248 | GD22927-PA | 78..248 | 1..171 | 884 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17830-PA | 269 | GJ17830-PA | 91..266 | 1..171 | 704 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24368-PA | 230 | GK24368-PA | 60..230 | 1..171 | 736 | 87.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15777-PA | 251 | GE15777-PA | 81..251 | 1..171 | 901 | 99.4 | Plus |