Clone LD16109 Report

Search the DGRC for LD16109

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:161
Well:9
Vector:pBS SK-
Associated Gene/TranscriptPino-RA
Protein status:LD16109.pep: gold
Preliminary Size:2118
Sequenced Size:2099

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4710 2001-01-01 Release 2 assignment
CG4710 2001-11-29 Blastp of sequenced clone
smi21F 2008-04-29 Release 5.5 accounting
smi21F 2008-08-15 Release 5.9 accounting
Pino 2008-12-18 5.12 accounting

Clone Sequence Records

LD16109.complete Sequence

2099 bp (2099 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069447

> LD16109.complete
TCGAGGTGCTTTGCTTGCCCACTTGGTCTTTCGGCTCTGGAGAAAACTAC
TCGCATCGAATTGAATTGAATCTGGGGAAAATCAGTCCGAGTCCCAGCTA
CACAGTTCAGTTTCGCTTCCCAGTCCAACTATAAAAGTGCGCTGCAGTCC
CAGTCAAACAACTGCATTCAGATACAAACTATTGCCAATTGCATTTTCAT
GAGCTAACTGTCTCGCATCGCGTGTGAAAAGTTACAAACAACACAAAAAC
AATTGCCAACGGTTAATGTTAATGTCCAGGCAATTATAAAAAGCAATTCG
ATTGTCTAGCTTACGCAAGGCCAACTACAATTACCAATAAATACGGCGAA
TAAAGCAGCACAGGAATCCCAATTTGGATTTATTAATAGCGCTGTATAAA
AAATCATAAAACAACAACCGTTGCTGTAAATAACCCAACAAATTGCCATC
AGCAGCCAATATGTCGATCGCCAGTGTTCACGGTCCCCAAATCGCCGACA
TCTGCAGTCCCCTGTCGCATCACAATCTCGGTCTGTCTGCCTCGCTGCCA
GATCTGGTGGGCAGTCCCCTGGAGATCAGCATGGACAACGTGCTGACCAT
TGAGGAGCTGCGCCAGCACATGGGCTCCTGCTTCACCTGCGGCGTCTCCT
GGACGGACGACCATGTGTCCCTCGACTGCAGCGAATGCGGTGGCTACAGC
CTGGAGCGTCCCTGTCCCCTGTGCGACGGCCAGTGCGGTGTCCAATGGAA
ACGTGATTTCGCCATGTCCCATGCCTGCAGTCAAGCTCGCTGGGTGGGCG
TGTGCATCAGCTACCCGGAAGTCGTGGCCGGAGTCCAGTTGCCCGTGGGA
GCAGGCGCTGGAGCCGCCACCTCGTGTGCCGCTGCCGCTGCGAATCAACT
GCGCCTGGCCCAGGAGCTGTGCTCCCGCCTGGAACAGCTGTCCACGTCGA
CGGCGAGCAAAAGCGGTCGCATCTAGAGCGCGGAATCCCCGCCCAGTTCC
TTCGACAGCCAGACTGCAAACACGCCTCCACATCAGCCACACCCCCGCAC
ACAGCCATTCATCCGGAAAGCAGAAGCTGAAGCAGAAGCAGAAAGCTGGA
GCGGAATTAGCTCCACCTGCACACCCAAACACACAGTCTCTCACCCGTAA
TTTAGGGCCTAATTACTAAGCTTCTTAGCTGTTAGTTATTATTGTTGTGC
AGCGTTGAGTCTTTAGTTCTTTGTTTAGCACACACAATCTTTTGTTTTAT
GATTTCACCGGTATCGTTTTCGTTCCGATTCGTTGTGTGACAGTGCAAAT
ATTTAGCAACTAAGTTAGTTCCTTTGTTTACCTTCCAATGGCACCATTTG
GTTTGCGCACATTACCTGTTCTATCCAGGAGAAGACTTCTTTCTGCCTAG
ACTTAAGCCGAGTTTAGGCAATGCAGTGATAACGGTGATATTAGCCAGAA
AGAATCGTGAGCAAATAGTGAATTTACATGATGTAGCAAATGTCTAACGA
TAGCTATAGATCGACATGAGATGATCATTTTTGTATAACCCCACACGCAC
ACACATCAAACAACCCGTGTAATCGTGTAGAGATTGTTGTTAACAATTAG
TTAGTTGTTGCTTTCTGCCTTGTGTCAAAGCTTGTTCGAAGCGAGGAGCT
CCGCGGGCACAGATCAAAGCTAGCTGCGATGGTGCCGGCGGAGGGTTCAG
TGAGCGAAGAAAGAAGAATCTTCCAGATTGCCTAATGTGCATAGTGCTCA
ACAAAGTAACTACAGGATTGAACAATTTCTCCAAGGGAAAAGTGAAAGCG
CATAGAAATGAGCAATTAAGGATGTGAAAACACGCACAAGGAAACAATTG
AAAAGCATTACTCAAAGTTGAAGATTTTCTGTGAAAATCCATATGACATG
TAGAAGTTTATACCTAATATATACACCTATATATTATATACCACATAAAT
CTGCATACAATATACATAAATATATATATATTTTTAATGTAGAGATATGT
TTTGTAAAAGACAAAGGCATATTTTTAAAATTAAATACCTAAACTATGCA
AAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD16109.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
Pino-RA 2296 Pino-RA 188..2245 1..2058 10290 100 Plus
Pino-RB 2093 Pino-RB 428..2042 444..2058 8075 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1114506..1115798 2056..766 6295 99.3 Minus
chr2L 23010047 chr2L 1118424..1118866 443..1 2155 99.1 Minus
chr2L 23010047 chr2L 1116293..1116542 766..517 1250 100 Minus
chr2L 23010047 chr2L 1117297..1117370 517..444 370 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:03:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1114652..1115944 2058..766 6465 100 Minus
2L 23513712 2L 1118566..1119008 443..1 2215 100 Minus
2L 23513712 2L 1116441..1116690 766..517 1250 100 Minus
2L 23513712 2L 1117443..1117516 517..444 370 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1114652..1115944 2058..766 6465 100 Minus
2L 23513712 2L 1118566..1119008 443..1 2215 100 Minus
2L 23513712 2L 1116441..1116690 766..517 1250 100 Minus
2L 23513712 2L 1117443..1117516 517..444 370 100 Minus
Blast to na_te.dros performed 2019-03-16 09:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 483..663 1822..2009 131 58.5 Plus
412 7567 412 412 7567bp 1812..1869 1998..1937 119 72.6 Minus
TAHRE 10463 TAHRE OSV 10463bp 9369..9424 1294..1237 114 69 Minus

LD16109.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:19:50 Download gff for LD16109.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1114506..1114582 1980..2056 100 == Minus
chr2L 1114656..1115797 767..1908 99 <- Minus
chr2L 1116293..1116542 517..766 100 <- Minus
chr2L 1117298..1117370 444..516 100 <- Minus
chr2L 1118424..1118866 1..443 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:50:59 Download gff for LD16109.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 213..750 439..976 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:23:20 Download gff for LD16109.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 213..750 439..976 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:00:54 Download gff for LD16109.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 213..750 439..976 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:49:56 Download gff for LD16109.complete
Subject Subject Range Query Range Percent Splice Strand
smi21F-RB 213..750 439..976 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:23 Download gff for LD16109.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 213..750 439..976 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:58:26 Download gff for LD16109.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RA 132..2187 1..2056 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:23:20 Download gff for LD16109.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RA 132..2187 1..2056 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:00:54 Download gff for LD16109.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RA 24..2079 1..2056 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:49:56 Download gff for LD16109.complete
Subject Subject Range Query Range Percent Splice Strand
smi21F-RA 132..2187 1..2056 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:23 Download gff for LD16109.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RA 24..2079 1..2056 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:19:50 Download gff for LD16109.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1117444..1117516 444..516 100 <- Minus
2L 1118566..1119008 1..443 100   Minus
2L 1114654..1115943 767..2056 100 <- Minus
2L 1116441..1116690 517..766 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:19:50 Download gff for LD16109.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1117444..1117516 444..516 100 <- Minus
2L 1118566..1119008 1..443 100   Minus
2L 1114654..1115943 767..2056 100 <- Minus
2L 1116441..1116690 517..766 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:19:50 Download gff for LD16109.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1117444..1117516 444..516 100 <- Minus
2L 1118566..1119008 1..443 100   Minus
2L 1114654..1115943 767..2056 100 <- Minus
2L 1116441..1116690 517..766 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:00:54 Download gff for LD16109.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1114654..1115943 767..2056 100 <- Minus
arm_2L 1116441..1116690 517..766 100 <- Minus
arm_2L 1117444..1117516 444..516 100 <- Minus
arm_2L 1118566..1119008 1..443 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:26:23 Download gff for LD16109.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1114654..1115943 767..2056 100 <- Minus
2L 1116441..1116690 517..766 100 <- Minus
2L 1117444..1117516 444..516 100 <- Minus
2L 1118566..1119008 1..443 100   Minus

LD16109.hyp Sequence

Translation from 460 to 975

> LD16109.hyp
MSIASVHGPQIADICSPLSHHNLGLSASLPDLVGSPLEISMDNVLTIEEL
RQHMGSCFTCGVSWTDDHVSLDCSECGGYSLERPCPLCDGQCGVQWKRDF
AMSHACSQARWVGVCISYPEVVAGVQLPVGAGAGAATSCAAAAANQLRLA
QELCSRLEQLSTSTASKSGRI*

LD16109.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
Pino-PC 171 CG4710-PC 1..171 1..171 911 100 Plus
Pino-PA 171 CG4710-PA 1..171 1..171 911 100 Plus
Pino-PB 249 CG4710-PB 79..249 1..171 911 100 Plus

LD16109.pep Sequence

Translation from 460 to 975

> LD16109.pep
MSIASVHGPQIADICSPLSHHNLGLSASLPDLVGSPLEISMDNVLTIEEL
RQHMGSCFTCGVSWTDDHVSLDCSECGGYSLERPCPLCDGQCGVQWKRDF
AMSHACSQARWVGVCISYPEVVAGVQLPVGAGAGAATSCAAAAANQLRLA
QELCSRLEQLSTSTASKSGRI*

LD16109.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14736-PA 204 GF14736-PA 135..204 102..171 264 92.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24613-PA 249 GG24613-PA 79..249 1..171 885 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10567-PA 169 GH10567-PA 1..169 1..171 701 83.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
Pino-PC 171 CG4710-PC 1..171 1..171 911 100 Plus
Pino-PA 171 CG4710-PA 1..171 1..171 911 100 Plus
Pino-PB 249 CG4710-PB 79..249 1..171 911 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21963-PA 261 GI21963-PA 84..258 1..171 710 82.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15076-PA 256 GL15076-PA 93..255 6..170 817 93.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25452-PA 169 GA25452-PA 1..168 1..170 833 94.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16627-PA 246 GM16627-PA 76..246 1..171 884 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22927-PA 248 GD22927-PA 78..248 1..171 884 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17830-PA 269 GJ17830-PA 91..266 1..171 704 78.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24368-PA 230 GK24368-PA 60..230 1..171 736 87.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15777-PA 251 GE15777-PA 81..251 1..171 901 99.4 Plus