Clone LD16174 Report

Search the DGRC for LD16174

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:161
Well:74
Vector:pBS SK-
Associated Gene/Transcripttub-RC
Protein status:LD16174.pep: gold
Preliminary Size:2391
Sequenced Size:2367

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10520 2001-01-01 Release 2 assignment
CG10520 2001-10-10 Blastp of sequenced clone
CG10520 2003-01-01 Sim4 clustering to Release 3
tub 2008-04-29 Release 5.5 accounting
tub 2008-08-15 Release 5.9 accounting
tub 2008-12-18 5.12 accounting

Clone Sequence Records

LD16174.complete Sequence

2367 bp (2367 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061215

> LD16174.complete
TCGAGATCTCAGAAACTATCACAAATCAAAATTAATTATTGTCCAAAAAT
ATCAAAAAGAACTAAGAACTAAGTACCCGGTATTCTTCTACAATTACAAA
CGAAAGCCATCTATCGGTGGGGTTACATTTATTGCTCACAACGCCGGAAT
ATGTCATTAATGAAAAAAAAAGTTTGGTTTTTTCTTACTTTGCGTTAAAA
ATTAGTGCAGTATTGCAAATGGCTAGCTATTTTCCGCATACGGAAATACC
ACACAATACCAATCGGCTTCGGGAATCCCCCTAATATTACATGACGAATC
TAATATGGTGCTGCGGTCCTCCTCGGTCACACTGAAATACTGCGAGCAGC
GAGCAGTAGCTGTGGGCATTGGCAAAAACATAGAGAGAGAAGATAGATGC
AAACATGGTTTTATAGCGGAAATCTCATACAATCGCACTGGACATCTGGG
AACTTGAACCATCGACCTGCCACAGGCAAAGGCTTTCCCGTAAGGTTATC
CTGGGTAGCTAAGGGAACACCATGGCGTATGGCTGGAACGGATGCGGAAT
GGGCGTGCAGGTGAACGGAAGCAACGGCGCCATAGGTTTATCCTCGAAGT
ATTCTCGCAACACGGAGCTGCGACGCGTTGAGGACAATGACATTTACCGG
CTTGCCAAAATACTAGATGAGAACTCATGCTGGCGCAAATTGATGTCGAT
CATACCCAAGGGCATGGATGTGCAGGCCTGCAGCGGAGCCGGATGCTTGA
ATTTTCCGGCGGAAATCAAAAAGGGATTTAAGTACACTGCGCAGGACGTG
TTCCAGATTGACGAGGCTGCAAACCGACTACCGCCGGACCAAAGCAAGTC
GCAGATGATGATCGACGAGTGGAAGACCTCTGGCAAGCTCAACGAGCGGC
CCACGGTTGGGGTATTGCTCCAACTTCTGGTGCAGGCAGAGCTCTTCAGT
GCGGCAGACTTTGTGGCACTAGACTTCCTAAATGAGTCCACCCCTGCCCG
GCCTGTTGACGGTCCCGGTGCGCTCATAAGCCTTGAGCTGCTGGAAGAGG
AAATGGAAGTGGACAACGAGGGGCTGAGCCTCAAATACCAGTCAAGCACT
GCCACTCTTGGGGCAGACGCTCAAGGTAGCGTTGGCCTGAACCTGGACAA
CTTTGAAAAAGACATTGTGAGGCGGGACAAGAGTGTGCCCCAGCCGTCAG
GAAACACCCCTCCCATAGCGCCACCTCGACGACAGCAAAGGAGTACTACT
AACTCCAACTTTGCAACATTGACAGGCACCGGAACTACGTCGACGACCAT
CCCGAATGTGCCCAATCTGACAATTCTCAATCCCAGCGAACAAATTCAGG
AGCCAGTGCTGCAGCCACGACCGATGAACATCCCCGATCTGTCTATACTC
ATTTCGAACTCTGGTGATTTGCGGGCAACTGTGTCGGACAACCCAAGCAA
CAGAACTAGCTCAACGGATCCGCCTAACATTCCGCGAATCACTCTTTTAA
TTGATAATTCTGGAGATGTAAACTCTCGACCAAATCACGCTCCAGCGAAA
GCTTCAACGGCTACCACATCAACGGCGAGCTCAAACAACTTGCCAATGAT
AAGCGCCTTGAATATAAGTAAAGGCAGCAGGGAGACCTTGCGTCCTGAGA
GCAGAAGCAGCTCCAGCAGCTTGAGCAAAGATGATGACGATGATAACGAT
GGTGAGGAGGATGGAGAGGAAGAGTACCCAGATGCCTTCTTGCCAAATCT
GAGTAACTCAGAGCAGCAGAGCTCAAACAATGACTCCAGCCTGACAACGG
TTACTGGCACCAGTGGTGATAACAGCTTTGAGCTAACCAACGACTCCAGC
TCCACCTCAAACGACGATTACGCTTGCAACATTCCAGACTTGAGTGAGCT
GCAGCAATAGATAAAAGCACCGACCATCGGCGGAGATGACATTCCGTTCG
ATAACTTATGCAACCCAGATGTATTCATTTGGCAGCTGGGTGTGGACCTT
CTTATGTTATGCATGAGGTCCAACTAGAATCTAAGATTCAGTGCACGATT
TGTTCATATCACGTCTGTAATCGTGACAGTACATGACAAGTACGGCAATA
TCAAATATTTCCGTTTCAAGAAAGCCATAACCCAATACCAAAATTTAACA
AATTTTGTATACTTACGAAATACTCCTTCATTTTCTAGTATAAATTTCCT
TAAACGCATAATGGGTTTCTGTGACAGTTTTGTCTTGGGACAAACTGCGA
TCTTATGACATTTTTCGTTATTAATTGATTGTTGCCTAAAATATTTCACA
AGTACGATATAATGGCTAAATACAAATAAAATATTTTTGAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

LD16174.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
tub-RB 2339 tub-RB 1..2339 1..2339 11695 100 Plus
tub-RC 2167 tub-RC 1..2166 178..2343 10830 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 214177..215532 984..2339 6780 100 Plus
chr3R 27901430 chr3R 213200..214111 73..984 4560 100 Plus
chr3R 27901430 chr3R 212964..213037 1..74 370 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:03:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4388458..4389817 984..2343 6800 100 Plus
3R 32079331 3R 4387481..4388392 73..984 4560 100 Plus
3R 32079331 3R 4387245..4387318 1..74 370 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4129289..4130648 984..2343 6800 100 Plus
3R 31820162 3R 4128312..4129223 73..984 4560 100 Plus
3R 31820162 3R 4128076..4128149 1..74 370 100 Plus
Blast to na_te.dros performed 2019-03-16 00:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 391..487 480..581 129 61.8 Plus

LD16174.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:28:01 Download gff for LD16174.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 214180..215532 987..2339 100   Plus
chr3R 212964..213035 1..72 100 -> Plus
chr3R 213200..214115 73..986 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:51:04 Download gff for LD16174.complete
Subject Subject Range Query Range Percent Splice Strand
tub-RB 1..1389 522..1910 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:46:12 Download gff for LD16174.complete
Subject Subject Range Query Range Percent Splice Strand
tub-RC 1..1389 522..1910 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:56:35 Download gff for LD16174.complete
Subject Subject Range Query Range Percent Splice Strand
tub-RC 1..1389 522..1910 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:57 Download gff for LD16174.complete
Subject Subject Range Query Range Percent Splice Strand
tub-RB 1..1389 522..1910 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:01:37 Download gff for LD16174.complete
Subject Subject Range Query Range Percent Splice Strand
tub-RC 1..1389 522..1910 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:29:36 Download gff for LD16174.complete
Subject Subject Range Query Range Percent Splice Strand
tub-RB 1..2339 1..2339 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:46:12 Download gff for LD16174.complete
Subject Subject Range Query Range Percent Splice Strand
tub-RB 1..2339 1..2339 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:56:35 Download gff for LD16174.complete
Subject Subject Range Query Range Percent Splice Strand
tub-RC 1..2006 334..2339 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:57 Download gff for LD16174.complete
Subject Subject Range Query Range Percent Splice Strand
tub-RB 1..2339 1..2339 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:01:37 Download gff for LD16174.complete
Subject Subject Range Query Range Percent Splice Strand
tub-RC 1..2006 334..2339 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:28:01 Download gff for LD16174.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4387245..4387316 1..72 100 -> Plus
3R 4387481..4388396 73..986 99 -> Plus
3R 4388461..4389813 987..2339 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:28:01 Download gff for LD16174.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4387245..4387316 1..72 100 -> Plus
3R 4387481..4388396 73..986 99 -> Plus
3R 4388461..4389813 987..2339 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:28:01 Download gff for LD16174.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4387245..4387316 1..72 100 -> Plus
3R 4387481..4388396 73..986 99 -> Plus
3R 4388461..4389813 987..2339 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:56:35 Download gff for LD16174.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 212967..213038 1..72 100 -> Plus
arm_3R 213203..214118 73..986 99 -> Plus
arm_3R 214183..215535 987..2339 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:51:46 Download gff for LD16174.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4128312..4129227 73..986 99 -> Plus
3R 4129292..4130644 987..2339 100   Plus
3R 4128076..4128147 1..72 100 -> Plus

LD16174.pep Sequence

Translation from 521 to 1909

> LD16174.pep
MAYGWNGCGMGVQVNGSNGAIGLSSKYSRNTELRRVEDNDIYRLAKILDE
NSCWRKLMSIIPKGMDVQACSGAGCLNFPAEIKKGFKYTAQDVFQIDEAA
NRLPPDQSKSQMMIDEWKTSGKLNERPTVGVLLQLLVQAELFSAADFVAL
DFLNESTPARPVDGPGALISLELLEEEMEVDNEGLSLKYQSSTATLGADA
QGSVGLNLDNFEKDIVRRDKSVPQPSGNTPPIAPPRRQQRSTTNSNFATL
TGTGTTSTTIPNVPNLTILNPSEQIQEPVLQPRPMNIPDLSILISNSGDL
RATVSDNPSNRTSSTDPPNIPRITLLIDNSGDVNSRPNHAPAKASTATTS
TASSNNLPMISALNISKGSRETLRPESRSSSSSLSKDDDDDNDGEEDGEE
EYPDAFLPNLSNSEQQSSNNDSSLTTVTGTSGDNSFELTNDSSSTSNDDY
ACNIPDLSELQQ*

LD16174.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18211-PA 451 GF18211-PA 6..450 4..461 1306 63.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12362-PA 444 GG12362-PA 1..444 1..462 1754 82.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14077-PA 520 GH14077-PA 9..512 4..460 871 47.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
tub-PC 462 CG10520-PC 1..462 1..462 2370 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10610-PA 521 GI10610-PA 8..521 2..462 941 48.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21462-PA 449 GL21462-PA 4..449 17..462 1299 64.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10367-PA 449 GA10367-PA 4..449 17..462 1298 64.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10751-PA 462 GM10751-PA 1..462 1..462 2334 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\tub-PA 447 GD19725-PA 1..447 1..462 1821 88.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\tub-PA 518 GJ22964-PA 8..518 9..462 993 50.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13530-PA 478 GK13530-PA 4..477 2..461 1032 54.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\tub-PA 460 GE25413-PA 1..460 1..462 1830 82.3 Plus

LD16174.hyp Sequence

Translation from 1052 to 1909

> LD16174.hyp
MEVDNEGLSLKYQSSTATLGADAQGSVGLNLDNFEKDIVRRDKSVPQPSG
NTPPIAPPRRQQRSTTNSNFATLTGTGTTSTTIPNVPNLTILNPSEQIQE
PVLQPRPMNIPDLSILISNSGDLRATVSDNPSNRTSSTDPPNIPRITLLI
DNSGDVNSRPNHAPAKASTATTSTASSNNLPMISALNISKGSRETLRPES
RSSSSSLSKDDDDDNDGEEDGEEEYPDAFLPNLSNSEQQSSNNDSSLTTV
TGTSGDNSFELTNDSSSTSNDDYACNIPDLSELQQ*

LD16174.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
tub-PC 462 CG10520-PC 178..462 1..285 1451 100 Plus