BDGP Sequence Production Resources |
Search the DGRC for LD16174
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 161 |
Well: | 74 |
Vector: | pBS SK- |
Associated Gene/Transcript | tub-RC |
Protein status: | LD16174.pep: gold |
Preliminary Size: | 2391 |
Sequenced Size: | 2367 |
Gene | Date | Evidence |
---|---|---|
CG10520 | 2001-01-01 | Release 2 assignment |
CG10520 | 2001-10-10 | Blastp of sequenced clone |
CG10520 | 2003-01-01 | Sim4 clustering to Release 3 |
tub | 2008-04-29 | Release 5.5 accounting |
tub | 2008-08-15 | Release 5.9 accounting |
tub | 2008-12-18 | 5.12 accounting |
2367 bp (2367 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061215
> LD16174.complete TCGAGATCTCAGAAACTATCACAAATCAAAATTAATTATTGTCCAAAAAT ATCAAAAAGAACTAAGAACTAAGTACCCGGTATTCTTCTACAATTACAAA CGAAAGCCATCTATCGGTGGGGTTACATTTATTGCTCACAACGCCGGAAT ATGTCATTAATGAAAAAAAAAGTTTGGTTTTTTCTTACTTTGCGTTAAAA ATTAGTGCAGTATTGCAAATGGCTAGCTATTTTCCGCATACGGAAATACC ACACAATACCAATCGGCTTCGGGAATCCCCCTAATATTACATGACGAATC TAATATGGTGCTGCGGTCCTCCTCGGTCACACTGAAATACTGCGAGCAGC GAGCAGTAGCTGTGGGCATTGGCAAAAACATAGAGAGAGAAGATAGATGC AAACATGGTTTTATAGCGGAAATCTCATACAATCGCACTGGACATCTGGG AACTTGAACCATCGACCTGCCACAGGCAAAGGCTTTCCCGTAAGGTTATC CTGGGTAGCTAAGGGAACACCATGGCGTATGGCTGGAACGGATGCGGAAT GGGCGTGCAGGTGAACGGAAGCAACGGCGCCATAGGTTTATCCTCGAAGT ATTCTCGCAACACGGAGCTGCGACGCGTTGAGGACAATGACATTTACCGG CTTGCCAAAATACTAGATGAGAACTCATGCTGGCGCAAATTGATGTCGAT CATACCCAAGGGCATGGATGTGCAGGCCTGCAGCGGAGCCGGATGCTTGA ATTTTCCGGCGGAAATCAAAAAGGGATTTAAGTACACTGCGCAGGACGTG TTCCAGATTGACGAGGCTGCAAACCGACTACCGCCGGACCAAAGCAAGTC GCAGATGATGATCGACGAGTGGAAGACCTCTGGCAAGCTCAACGAGCGGC CCACGGTTGGGGTATTGCTCCAACTTCTGGTGCAGGCAGAGCTCTTCAGT GCGGCAGACTTTGTGGCACTAGACTTCCTAAATGAGTCCACCCCTGCCCG GCCTGTTGACGGTCCCGGTGCGCTCATAAGCCTTGAGCTGCTGGAAGAGG AAATGGAAGTGGACAACGAGGGGCTGAGCCTCAAATACCAGTCAAGCACT GCCACTCTTGGGGCAGACGCTCAAGGTAGCGTTGGCCTGAACCTGGACAA CTTTGAAAAAGACATTGTGAGGCGGGACAAGAGTGTGCCCCAGCCGTCAG GAAACACCCCTCCCATAGCGCCACCTCGACGACAGCAAAGGAGTACTACT AACTCCAACTTTGCAACATTGACAGGCACCGGAACTACGTCGACGACCAT CCCGAATGTGCCCAATCTGACAATTCTCAATCCCAGCGAACAAATTCAGG AGCCAGTGCTGCAGCCACGACCGATGAACATCCCCGATCTGTCTATACTC ATTTCGAACTCTGGTGATTTGCGGGCAACTGTGTCGGACAACCCAAGCAA CAGAACTAGCTCAACGGATCCGCCTAACATTCCGCGAATCACTCTTTTAA TTGATAATTCTGGAGATGTAAACTCTCGACCAAATCACGCTCCAGCGAAA GCTTCAACGGCTACCACATCAACGGCGAGCTCAAACAACTTGCCAATGAT AAGCGCCTTGAATATAAGTAAAGGCAGCAGGGAGACCTTGCGTCCTGAGA GCAGAAGCAGCTCCAGCAGCTTGAGCAAAGATGATGACGATGATAACGAT GGTGAGGAGGATGGAGAGGAAGAGTACCCAGATGCCTTCTTGCCAAATCT GAGTAACTCAGAGCAGCAGAGCTCAAACAATGACTCCAGCCTGACAACGG TTACTGGCACCAGTGGTGATAACAGCTTTGAGCTAACCAACGACTCCAGC TCCACCTCAAACGACGATTACGCTTGCAACATTCCAGACTTGAGTGAGCT GCAGCAATAGATAAAAGCACCGACCATCGGCGGAGATGACATTCCGTTCG ATAACTTATGCAACCCAGATGTATTCATTTGGCAGCTGGGTGTGGACCTT CTTATGTTATGCATGAGGTCCAACTAGAATCTAAGATTCAGTGCACGATT TGTTCATATCACGTCTGTAATCGTGACAGTACATGACAAGTACGGCAATA TCAAATATTTCCGTTTCAAGAAAGCCATAACCCAATACCAAAATTTAACA AATTTTGTATACTTACGAAATACTCCTTCATTTTCTAGTATAAATTTCCT TAAACGCATAATGGGTTTCTGTGACAGTTTTGTCTTGGGACAAACTGCGA TCTTATGACATTTTTCGTTATTAATTGATTGTTGCCTAAAATATTTCACA AGTACGATATAATGGCTAAATACAAATAAAATATTTTTGAAAAAAAAAAA AAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 214177..215532 | 984..2339 | 6780 | 100 | Plus |
chr3R | 27901430 | chr3R | 213200..214111 | 73..984 | 4560 | 100 | Plus |
chr3R | 27901430 | chr3R | 212964..213037 | 1..74 | 370 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 391..487 | 480..581 | 129 | 61.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 214180..215532 | 987..2339 | 100 | Plus | |
chr3R | 212964..213035 | 1..72 | 100 | -> | Plus |
chr3R | 213200..214115 | 73..986 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tub-RB | 1..1389 | 522..1910 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tub-RC | 1..1389 | 522..1910 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tub-RC | 1..1389 | 522..1910 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tub-RB | 1..1389 | 522..1910 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tub-RC | 1..1389 | 522..1910 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tub-RB | 1..2339 | 1..2339 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tub-RB | 1..2339 | 1..2339 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tub-RC | 1..2006 | 334..2339 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tub-RB | 1..2339 | 1..2339 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tub-RC | 1..2006 | 334..2339 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4387245..4387316 | 1..72 | 100 | -> | Plus |
3R | 4387481..4388396 | 73..986 | 99 | -> | Plus |
3R | 4388461..4389813 | 987..2339 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4387245..4387316 | 1..72 | 100 | -> | Plus |
3R | 4387481..4388396 | 73..986 | 99 | -> | Plus |
3R | 4388461..4389813 | 987..2339 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4387245..4387316 | 1..72 | 100 | -> | Plus |
3R | 4387481..4388396 | 73..986 | 99 | -> | Plus |
3R | 4388461..4389813 | 987..2339 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 212967..213038 | 1..72 | 100 | -> | Plus |
arm_3R | 213203..214118 | 73..986 | 99 | -> | Plus |
arm_3R | 214183..215535 | 987..2339 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4128312..4129227 | 73..986 | 99 | -> | Plus |
3R | 4129292..4130644 | 987..2339 | 100 | Plus | |
3R | 4128076..4128147 | 1..72 | 100 | -> | Plus |
Translation from 521 to 1909
> LD16174.pep MAYGWNGCGMGVQVNGSNGAIGLSSKYSRNTELRRVEDNDIYRLAKILDE NSCWRKLMSIIPKGMDVQACSGAGCLNFPAEIKKGFKYTAQDVFQIDEAA NRLPPDQSKSQMMIDEWKTSGKLNERPTVGVLLQLLVQAELFSAADFVAL DFLNESTPARPVDGPGALISLELLEEEMEVDNEGLSLKYQSSTATLGADA QGSVGLNLDNFEKDIVRRDKSVPQPSGNTPPIAPPRRQQRSTTNSNFATL TGTGTTSTTIPNVPNLTILNPSEQIQEPVLQPRPMNIPDLSILISNSGDL RATVSDNPSNRTSSTDPPNIPRITLLIDNSGDVNSRPNHAPAKASTATTS TASSNNLPMISALNISKGSRETLRPESRSSSSSLSKDDDDDNDGEEDGEE EYPDAFLPNLSNSEQQSSNNDSSLTTVTGTSGDNSFELTNDSSSTSNDDY ACNIPDLSELQQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18211-PA | 451 | GF18211-PA | 6..450 | 4..461 | 1306 | 63.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12362-PA | 444 | GG12362-PA | 1..444 | 1..462 | 1754 | 82.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14077-PA | 520 | GH14077-PA | 9..512 | 4..460 | 871 | 47.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tub-PC | 462 | CG10520-PC | 1..462 | 1..462 | 2370 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10610-PA | 521 | GI10610-PA | 8..521 | 2..462 | 941 | 48.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21462-PA | 449 | GL21462-PA | 4..449 | 17..462 | 1299 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10367-PA | 449 | GA10367-PA | 4..449 | 17..462 | 1298 | 64.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10751-PA | 462 | GM10751-PA | 1..462 | 1..462 | 2334 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\tub-PA | 447 | GD19725-PA | 1..447 | 1..462 | 1821 | 88.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\tub-PA | 518 | GJ22964-PA | 8..518 | 9..462 | 993 | 50.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13530-PA | 478 | GK13530-PA | 4..477 | 2..461 | 1032 | 54.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\tub-PA | 460 | GE25413-PA | 1..460 | 1..462 | 1830 | 82.3 | Plus |
Translation from 1052 to 1909
> LD16174.hyp MEVDNEGLSLKYQSSTATLGADAQGSVGLNLDNFEKDIVRRDKSVPQPSG NTPPIAPPRRQQRSTTNSNFATLTGTGTTSTTIPNVPNLTILNPSEQIQE PVLQPRPMNIPDLSILISNSGDLRATVSDNPSNRTSSTDPPNIPRITLLI DNSGDVNSRPNHAPAKASTATTSTASSNNLPMISALNISKGSRETLRPES RSSSSSLSKDDDDDNDGEEDGEEEYPDAFLPNLSNSEQQSSNNDSSLTTV TGTSGDNSFELTNDSSSTSNDDYACNIPDLSELQQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tub-PC | 462 | CG10520-PC | 178..462 | 1..285 | 1451 | 100 | Plus |