Clone LD16320 Report

Search the DGRC for LD16320

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:163
Well:20
Vector:pBS SK-
Associated Gene/Transcriptwcd-RA
Protein status:LD16320.pep: gold
Preliminary Size:1651
Sequenced Size:1662

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7989 2001-01-01 Release 2 assignment
CG7989 2002-06-06 Blastp of sequenced clone
CG7989 2003-01-01 Sim4 clustering to Release 3
l(2)k07824 2008-04-29 Release 5.5 accounting
l(2)k07824 2008-08-15 Release 5.9 accounting
l(2)k07824 2008-12-18 5.12 accounting

Clone Sequence Records

LD16320.complete Sequence

1662 bp (1662 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119590

> LD16320.complete
AGCTGCACGTGTATATTTTTTTGCGGTCCAAAGAAAAGTTCGTAAATAAA
CGAATTTGCGTGCATTTCCAGCGAACACGATGAGTTCAGACGAGTCCAGC
GACGGTTTGGAGGAGCTGCAGAGTCTGAAGGCCCTCTACGGCCAGCAGGA
GCAAGAGAAACCGGCAAAGATCAAAAGGGAACGTTATATTCCAAAGGCCT
CGCAGGCCAAGGAGCTCAACTATGTGGAGGTGCCCATGGAAAAGGTGCTC
TTCGGCGACAGGCAGCGACTGCTCACCAATCTAGCCAAGTCCGTGGGACA
AAAGTTGCCGAACGATGACGAAGACGAGCAGGAGGAAAATCCCGGCCAGG
CAAAGCCAGGCGACAAGCGGAAAGCCGCCTGGTCGGATTCCGATGACGAG
GACCTGCAGGTGGGCGATGTCAAGAAGGCCACAAAGCACACGGGTCCACT
GAACCACCTGCGCAAGGATAAATCGTACAAGGAGTATCTTACGGCGCGAT
TCCAGCGCACGCTTAACCAACCCAAGTGGGCGGAAAAGAAGGTCAAAAAT
GAGGACGACGAGGACGTATCCTCCGACGAAGAACTGCTGCGGACGGTTGG
CTTTATCGATCGTAAAGCCCGGAACAGTGATCTGCCCCAGAAGACTCTGA
ATTTTAAACGGGTCAAAGACCTGAACAGGGCCACATATGCCGAGGGTAAT
GCCACCAGCATTCAGTTTCATCCAACCAGTACTGCTGCTCTAGTGGCGGG
CATGAATGGCCTAGCCACCATCTACGCCGTGGATGGGCAAAAGAACGAAA
GGTTGCACAACATGCGCTTCAAGAAGTTCCCGCTGGCGTGCTCCAGAATT
GCTCCATGCGGCACAAGGGCGTTCTTTGGTTCTGTGAAACCATTCTACTA
CTCCTACGACTTGCTGGAAGCCAAGGAATCGAAGCTAAAGCTGCCGGGCG
CAATGGAATTTATGCACCGCTTTGAGGTGTCTCCATGTGGCAAATTTATC
GTCACTGCTGGCAAGTTTGGAGCCATTCACCTGCTCACGGCCAAAACAAA
TGAGCTGCTGCACAGCTTCAAGCAGGAGGGCAAAGTGAAGGGATTCACAT
GGTCTAGTGACTCCAAGAGGATCCTCGTCTGCGGTTCCACTTCCAATGTC
AGCGTGCTGAACCTGCGCCAGAACCTCATCGAGCACATCTTCATGGACGA
CGGCTGTATACATGGAGAGTCCATTCAACTGTCTCCCAACCAACGCCTAC
TGGCCACCGGCAGTCAAGAGGGCGTGGTCAACATCTACGACTACGAGAGC
ATTTTCGCATCCAAGGCCCCACAACCCGAGAAGCGCTTCATGAACCTACG
GACTGCCATCACGGATCTCCAGTTCAATCACTCATCTGAGCTACTGGCGA
TGTGCTCCAGTGAGGCGCCGAATGCTTTTAAGCTGGCCCATTTCCCCAGC
GCCACTGTGTACTCCAATTTCCCGGCACAGAACGAGAAGGTTGGCTTTGT
GACCTCCATGGCCTTTTCGCCGCACAGCAGCTTCCTGGCCTTTGCCACTA
AGGGCAAACAGGTGCCGCTCTTTAGGCTTAAGTACTTCAAGGGTTATTAA
TTGAAGGCAGTATGATGTTTACAATAAATTCTTAAATAAAAAAAAAAAAA
AAAAAAAAAAAA

LD16320.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k07824-RA 1661 l(2)k07824-RA 25..1661 1..1637 8185 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12233138..12234774 1637..1 8065 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:04:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16345834..16347474 1641..1 8205 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16347033..16348673 1641..1 8205 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:31:40 has no hits.

LD16320.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:32:35 Download gff for LD16320.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12233138..12234774 1..1637 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:51:11 Download gff for LD16320.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k07824-RA 1..1521 80..1600 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:30:53 Download gff for LD16320.complete
Subject Subject Range Query Range Percent Splice Strand
wcd-RA 1..1521 80..1600 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:54:07 Download gff for LD16320.complete
Subject Subject Range Query Range Percent Splice Strand
wcd-RA 1..1521 80..1600 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:21:00 Download gff for LD16320.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k07824-RA 1..1521 80..1600 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:38:03 Download gff for LD16320.complete
Subject Subject Range Query Range Percent Splice Strand
wcd-RA 1..1521 80..1600 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:00:44 Download gff for LD16320.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k07824-RA 25..1661 1..1637 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:30:53 Download gff for LD16320.complete
Subject Subject Range Query Range Percent Splice Strand
wcd-RA 25..1661 1..1637 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:07 Download gff for LD16320.complete
Subject Subject Range Query Range Percent Splice Strand
wcd-RA 27..1663 1..1637 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:21:00 Download gff for LD16320.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k07824-RA 25..1661 1..1637 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:03 Download gff for LD16320.complete
Subject Subject Range Query Range Percent Splice Strand
wcd-RA 27..1663 1..1637 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:32:35 Download gff for LD16320.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16345838..16347474 1..1637 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:32:35 Download gff for LD16320.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16345838..16347474 1..1637 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:32:35 Download gff for LD16320.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16345838..16347474 1..1637 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:07 Download gff for LD16320.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12233343..12234979 1..1637 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:54:46 Download gff for LD16320.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16347037..16348673 1..1637 100   Minus

LD16320.hyp Sequence

Translation from 79 to 1599

> LD16320.hyp
MSSDESSDGLEELQSLKALYGQQEQEKPAKIKRERYIPKASQAKELNYVE
VPMEKVLFGDRQRLLTNLAKSVGQKLPNDDEDEQEENPGQAKPGDKRKAA
WSDSDDEDLQVGDVKKATKHTGPLNHLRKDKSYKEYLTARFQRTLNQPKW
AEKKVKNEDDEDVSSDEELLRTVGFIDRKARNSDLPQKTLNFKRVKDLNR
ATYAEGNATSIQFHPTSTAALVAGMNGLATIYAVDGQKNERLHNMRFKKF
PLACSRIAPCGTRAFFGSVKPFYYSYDLLEAKESKLKLPGAMEFMHRFEV
SPCGKFIVTAGKFGAIHLLTAKTNELLHSFKQEGKVKGFTWSSDSKRILV
CGSTSNVSVLNLRQNLIEHIFMDDGCIHGESIQLSPNQRLLATGSQEGVV
NIYDYESIFASKAPQPEKRFMNLRTAITDLQFNHSSELLAMCSSEAPNAF
KLAHFPSATVYSNFPAQNEKVGFVTSMAFSPHSSFLAFATKGKQVPLFRL
KYFKGY*

LD16320.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
wcd-PA 506 CG7989-PA 1..506 1..506 2623 100 Plus

LD16320.pep Sequence

Translation from 79 to 1599

> LD16320.pep
MSSDESSDGLEELQSLKALYGQQEQEKPAKIKRERYIPKASQAKELNYVE
VPMEKVLFGDRQRLLTNLAKSVGQKLPNDDEDEQEENPGQAKPGDKRKAA
WSDSDDEDLQVGDVKKATKHTGPLNHLRKDKSYKEYLTARFQRTLNQPKW
AEKKVKNEDDEDVSSDEELLRTVGFIDRKARNSDLPQKTLNFKRVKDLNR
ATYAEGNATSIQFHPTSTAALVAGMNGLATIYAVDGQKNERLHNMRFKKF
PLACSRIAPCGTRAFFGSVKPFYYSYDLLEAKESKLKLPGAMEFMHRFEV
SPCGKFIVTAGKFGAIHLLTAKTNELLHSFKQEGKVKGFTWSSDSKRILV
CGSTSNVSVLNLRQNLIEHIFMDDGCIHGESIQLSPNQRLLATGSQEGVV
NIYDYESIFASKAPQPEKRFMNLRTAITDLQFNHSSELLAMCSSEAPNAF
KLAHFPSATVYSNFPAQNEKVGFVTSMAFSPHSSFLAFATKGKQVPLFRL
KYFKGY*

LD16320.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11267-PA 505 GF11267-PA 1..505 1..506 2074 75.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22271-PA 506 GG22271-PA 1..506 1..506 2540 92.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21920-PA 514 GH21920-PA 1..514 1..506 1787 65.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
wcd-PA 506 CG7989-PA 1..506 1..506 2623 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19626-PA 506 GI19626-PA 1..506 1..506 1738 62.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11347-PA 501 GL11347-PA 1..501 1..506 1957 71.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20745-PA 501 GA20745-PA 1..501 1..506 1965 72 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20061-PA 506 GM20061-PA 1..506 1..506 2548 94.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25543-PA 506 GD25543-PA 1..506 1..506 2556 94.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14994-PA 508 GJ14994-PA 1..508 1..506 1768 64.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21606-PA 494 GK21606-PA 35..494 47..506 1600 61.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14067-PA 506 GE14067-PA 1..506 1..506 2469 88.9 Plus