Clone LD16340 Report

Search the DGRC for LD16340

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:163
Well:40
Vector:pBS SK-
Associated Gene/TranscriptCG42358-RA
Protein status:LD16340.pep: gold
Preliminary Size:1655
Sequenced Size:1494

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5558 2001-01-01 Release 2 assignment
CG5558 2001-11-29 Blastp of sequenced clone
CG5558 2003-01-01 Sim4 clustering to Release 3
CG5558 2008-04-29 Release 5.5 accounting
CG5558 2008-08-15 Release 5.9 accounting
CG42358 2008-12-18 5.12 accounting
CG42359 2008-12-18 5.12 accounting

Clone Sequence Records

LD16340.complete Sequence

1494 bp (1494 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069449

> LD16340.complete
CGCAAACAACACATACACGTGCACGTGACGACAATGAGTAAAAAACCGCA
TTCCATAAAAGTTCCCACCCAATACAGGGCGACTGCCAAGATTTTGAAGG
CGGCACTGGAGCAGCAGAAGTGCATCAAGACCCTAATATTTGCAGAGAAG
CATGCCCGTACACGCTCTTTGCATACGGTTCTGAAAAAATTTAGCGAAAA
TCGTGTGGCACTGGAAAAGGCCATCGAAGAGACAGGACTGCTCAGGGACA
ATCCCAGTTTTGATCCCAGTTTGGCCAAGATTCTAGTCACCGAACTGCTG
TTTGGCAGGAAGGAGCTGAACGGCGAAAGCAAACCCGTGCAAACGGTGCG
AAGTTACAAGGATCGACTGCTAAATTCCATCAGAGATTTCGGTGTCCAGC
GAAAAGAACCCAATCCTCGATATGTGCGCATCAACACAAATCTATACAGC
TTGGCGGAGGCCTTGGACTACCTGCATAAAAGCGACTGGCGGCGCAAGGA
GCTGCCTGCGGACGCCAGCTATGCGGATTTTCTGACTGCCATCAAATCGC
TGGCGGAGAACGAGTTCATGACCGATCTGCACGTTGAGGGTGTGCTCATT
TTTCCTGCCAAGTGGTCCAACTACTGGGTCCGCCATCCGTTGGTGCACAG
CAAGAGGTTTATACTGCAGAACAAGGCCACCTGTTTGGCCGCCGAACTAC
TTGCTCCGCCGTCTGGGGCCACTGTGCTGGATATGTGCGCAGCTCCCGGT
ATGAAGACAGTGCACATATGCAATGTGATGCAGAACAAGGGATGCATCTA
CTCCGTGGAGCAGGACCACGTACGCTACAATACGCTGTGCGAAATAACAA
AGGATGCTGGTTGCGATATTGTAAAACCCATTTTGGGAGACGCCTTGAAC
CTAACACCCGAACGCTTTCCGGACGTAGAGTACATCCTGGTGGACCCTAG
TTGCTCTGGCAGCGGAATGCAAAACCGCATGACCGTGTGCGACGAGCCGA
AGGAGGACAAGCGGCTGCAAAAGCTGCAGGGTTTGCAAATTAAGATCCTG
TCGCACGCGATGGGCGCCTTTCCGAACGTCAAACGCATTGCCTACTGCAC
GTGTTCGCTGTGGAAGGAGGAAAACGAGCAGGTGGTGCAGCGTTGTCTTC
AGCTAAATCCATCCTTCAAGCTGCTCAGCTGCAAGAAGGCCTTGCGCAAC
AAGTGGCACAATGTGGGCGACAAGGACTATCCCAATATTGGCAAGAACGT
CCTGTATTGCCAGCCGGACAGTGATCTTACCGATGGCATCTTCCTGGCCC
TTTTCGAGAAACGCCGCGAGGGCGAAAAGGATTAGTTGTTTCAAACGCAA
GAAGGACATTTGTTTCCTTAAATTGTAACCATTTCTTTATTTGGCACTCG
AGCCATTGAATTTTTCATTTTCAGAATATGTGTACACATTTTTTAAAAAA
ATAAAAAAATTATATAATGAAAAAAAAAAAAAAAAAAAAAAAAA

LD16340.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG42358-RA 1451 CG42358-RA 8..1451 1..1444 7220 100 Plus
CG42359-RA 941 CG42359-RA 8..413 1..406 2030 100 Plus
nanos.a 2276 nanos.a 2173..2276 1469..1366 520 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14984058..14984623 1469..905 2780 99.8 Minus
chr3R 27901430 chr3R 14984687..14985186 904..405 2470 99.6 Minus
chr3R 27901430 chr3R 14985750..14985999 406..157 1235 99.6 Minus
chr3R 27901430 chr3R 14986076..14986231 156..1 750 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:04:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19160099..19160663 1469..905 2825 100 Minus
3R 32079331 3R 19160727..19161226 904..405 2500 100 Minus
3R 32079331 3R 19161790..19162039 406..157 1250 100 Minus
3R 32079331 3R 19162116..19162271 156..1 780 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18900930..18901494 1469..905 2825 100 Minus
3R 31820162 3R 18901558..18902057 904..405 2500 100 Minus
3R 31820162 3R 18902621..18902870 406..157 1250 100 Minus
3R 31820162 3R 18902947..18903102 156..1 780 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:22:05 has no hits.

LD16340.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:23:00 Download gff for LD16340.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14984097..14984623 905..1431 100 <- Minus
chr3R 14984687..14985184 407..904 99 <- Minus
chr3R 14985750..14985999 157..406 99 <- Minus
chr3R 14986076..14986231 1..156 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:51:16 Download gff for LD16340.complete
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 1..1302 34..1335 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:23:52 Download gff for LD16340.complete
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 1..1302 34..1335 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:16:38 Download gff for LD16340.complete
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 1..1302 34..1335 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:50:33 Download gff for LD16340.complete
Subject Subject Range Query Range Percent Splice Strand
CG5558-RA 1..1302 34..1335 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:19:29 Download gff for LD16340.complete
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 1..1302 34..1335 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:59:13 Download gff for LD16340.complete
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 8..1476 1..1469 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:23:51 Download gff for LD16340.complete
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 8..1476 1..1469 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:16:38 Download gff for LD16340.complete
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 30..1498 1..1469 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:50:33 Download gff for LD16340.complete
Subject Subject Range Query Range Percent Splice Strand
CG5558-RA 8..1476 1..1469 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:19:29 Download gff for LD16340.complete
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 30..1498 1..1469 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:23:00 Download gff for LD16340.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19160099..19160663 905..1469 100 <- Minus
3R 19160727..19161224 407..904 100 <- Minus
3R 19161790..19162039 157..406 100 <- Minus
3R 19162116..19162271 1..156 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:23:00 Download gff for LD16340.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19160099..19160663 905..1469 100 <- Minus
3R 19160727..19161224 407..904 100 <- Minus
3R 19161790..19162039 157..406 100 <- Minus
3R 19162116..19162271 1..156 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:23:00 Download gff for LD16340.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19160099..19160663 905..1469 100 <- Minus
3R 19160727..19161224 407..904 100 <- Minus
3R 19161790..19162039 157..406 100 <- Minus
3R 19162116..19162271 1..156 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:16:38 Download gff for LD16340.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14985821..14986385 905..1469 100 <- Minus
arm_3R 14986449..14986946 407..904 100 <- Minus
arm_3R 14987512..14987761 157..406 100 <- Minus
arm_3R 14987838..14987993 1..156 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:26:59 Download gff for LD16340.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18902947..18903102 1..156 100   Minus
3R 18900930..18901494 905..1469 100 <- Minus
3R 18901558..18902055 407..904 100 <- Minus
3R 18902621..18902870 157..406 100 <- Minus

LD16340.hyp Sequence

Translation from 0 to 1334

> LD16340.hyp
RKQHIHVHVTTMSKKPHSIKVPTQYRATAKILKAALEQQKCIKTLIFAEK
HARTRSLHTVLKKFSENRVALEKAIEETGLLRDNPSFDPSLAKILVTELL
FGRKELNGESKPVQTVRSYKDRLLNSIRDFGVQRKEPNPRYVRINTNLYS
LAEALDYLHKSDWRRKELPADASYADFLTAIKSLAENEFMTDLHVEGVLI
FPAKWSNYWVRHPLVHSKRFILQNKATCLAAELLAPPSGATVLDMCAAPG
MKTVHICNVMQNKGCIYSVEQDHVRYNTLCEITKDAGCDIVKPILGDALN
LTPERFPDVEYILVDPSCSGSGMQNRMTVCDEPKEDKRLQKLQGLQIKIL
SHAMGAFPNVKRIAYCTCSLWKEENEQVVQRCLQLNPSFKLLSCKKALRN
KWHNVGDKDYPNIGKNVLYCQPDSDLTDGIFLALFEKRREGEKD*

LD16340.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG42358-PA 433 CG5558-PA 1..433 12..444 2279 100 Plus
CG8545-PA 891 CG8545-PA 417..584 220..384 158 26.9 Plus

LD16340.pep Sequence

Translation from 33 to 1334

> LD16340.pep
MSKKPHSIKVPTQYRATAKILKAALEQQKCIKTLIFAEKHARTRSLHTVL
KKFSENRVALEKAIEETGLLRDNPSFDPSLAKILVTELLFGRKELNGESK
PVQTVRSYKDRLLNSIRDFGVQRKEPNPRYVRINTNLYSLAEALDYLHKS
DWRRKELPADASYADFLTAIKSLAENEFMTDLHVEGVLIFPAKWSNYWVR
HPLVHSKRFILQNKATCLAAELLAPPSGATVLDMCAAPGMKTVHICNVMQ
NKGCIYSVEQDHVRYNTLCEITKDAGCDIVKPILGDALNLTPERFPDVEY
ILVDPSCSGSGMQNRMTVCDEPKEDKRLQKLQGLQIKILSHAMGAFPNVK
RIAYCTCSLWKEENEQVVQRCLQLNPSFKLLSCKKALRNKWHNVGDKDYP
NIGKNVLYCQPDSDLTDGIFLALFEKRREGEKD*

LD16340.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18939-PA 433 GF18939-PA 1..433 1..433 1772 74.6 Plus
Dana\GF11004-PA 441 GF11004-PA 210..397 210..395 199 28.4 Plus
Dana\GF12515-PA 896 GF12515-PA 352..648 136..426 171 24 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16141-PA 532 GG16141-PA 239..532 140..433 1391 86.4 Plus
Dere\GG16141-PA 532 GG16141-PA 1..104 1..104 461 85.6 Plus
Dere\GG20307-PA 897 GG20307-PA 424..644 209..426 165 24.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18476-PA 433 GH18476-PA 1..433 1..433 1778 74.6 Plus
Dgri\GH16775-PA 449 GH16775-PA 214..399 210..387 184 28.7 Plus
Dgri\GH21314-PA 843 GH21314-PA 352..595 136..373 171 26.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
Nsun5-PA 433 CG5558-PA 1..433 1..433 2279 100 Plus
CG8545-PA 891 CG8545-PA 417..584 209..373 158 26.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24054-PA 433 GI24054-PA 1..433 1..433 1728 72.7 Plus
Dmoj\GI13435-PA 443 GI13435-PA 210..441 210..429 184 28.6 Plus
Dmoj\GI19747-PA 839 GI19747-PA 331..574 136..373 168 25.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23704-PA 433 GL23704-PA 1..433 1..433 1791 74.8 Plus
Dper\GL24972-PA 438 GL24972-PA 206..437 204..426 180 27.1 Plus
Dper\GL10113-PA 934 GL10113-PA 424..644 209..426 162 25.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18969-PA 433 GA18969-PA 1..433 1..433 1792 74.8 Plus
Dpse\GA10764-PA 438 GA10764-PA 206..437 204..426 179 27.2 Plus
Dpse\GA21153-PA 934 GA21153-PA 424..644 209..426 161 25.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10043-PA 534 GM10043-PA 241..534 140..433 1479 90.1 Plus
Dsec\GM10043-PA 534 GM10043-PA 1..104 1..104 516 98.1 Plus
Dsec\GM21395-PA 865 GM21395-PA 410..617 209..402 163 25.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20129-PA 534 GD20129-PA 241..534 140..433 1475 89.8 Plus
Dsim\GD20129-PA 534 GD20129-PA 1..104 1..104 514 97.1 Plus
Dsim\GD15057-PA 440 GD15057-PA 210..379 210..368 150 27.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23680-PA 433 GJ23680-PA 1..431 1..431 1756 74 Plus
Dvir\GJ11797-PA 413 GJ11797-PA 183..361 210..381 183 31.1 Plus
Dvir\GJ18081-PA 840 GJ18081-PA 336..579 136..373 176 26.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13235-PA 440 GK13235-PA 1..440 1..433 1625 69.9 Plus
Dwil\GK20395-PA 457 GK20395-PA 217..396 210..381 180 27.8 Plus
Dwil\GK17973-PA 866 GK17973-PA 324..567 136..373 166 25 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25147-PA 532 GE25147-PA 239..532 140..433 1403 85.7 Plus
Dyak\GE25147-PA 532 GE25147-PA 1..104 1..104 456 83.7 Plus
Dyak\GE12467-PA 902 GE12467-PA 427..647 209..426 165 24.9 Plus
Dyak\GE22645-PA 440 GE22645-PA 204..391 204..380 151 26.7 Plus