BDGP Sequence Production Resources |
Search the DGRC for LD16340
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 163 |
Well: | 40 |
Vector: | pBS SK- |
Associated Gene/Transcript | CG42358-RA |
Protein status: | LD16340.pep: gold |
Preliminary Size: | 1655 |
Sequenced Size: | 1494 |
Gene | Date | Evidence |
---|---|---|
CG5558 | 2001-01-01 | Release 2 assignment |
CG5558 | 2001-11-29 | Blastp of sequenced clone |
CG5558 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5558 | 2008-04-29 | Release 5.5 accounting |
CG5558 | 2008-08-15 | Release 5.9 accounting |
CG42358 | 2008-12-18 | 5.12 accounting |
CG42359 | 2008-12-18 | 5.12 accounting |
1494 bp (1494 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069449
> LD16340.complete CGCAAACAACACATACACGTGCACGTGACGACAATGAGTAAAAAACCGCA TTCCATAAAAGTTCCCACCCAATACAGGGCGACTGCCAAGATTTTGAAGG CGGCACTGGAGCAGCAGAAGTGCATCAAGACCCTAATATTTGCAGAGAAG CATGCCCGTACACGCTCTTTGCATACGGTTCTGAAAAAATTTAGCGAAAA TCGTGTGGCACTGGAAAAGGCCATCGAAGAGACAGGACTGCTCAGGGACA ATCCCAGTTTTGATCCCAGTTTGGCCAAGATTCTAGTCACCGAACTGCTG TTTGGCAGGAAGGAGCTGAACGGCGAAAGCAAACCCGTGCAAACGGTGCG AAGTTACAAGGATCGACTGCTAAATTCCATCAGAGATTTCGGTGTCCAGC GAAAAGAACCCAATCCTCGATATGTGCGCATCAACACAAATCTATACAGC TTGGCGGAGGCCTTGGACTACCTGCATAAAAGCGACTGGCGGCGCAAGGA GCTGCCTGCGGACGCCAGCTATGCGGATTTTCTGACTGCCATCAAATCGC TGGCGGAGAACGAGTTCATGACCGATCTGCACGTTGAGGGTGTGCTCATT TTTCCTGCCAAGTGGTCCAACTACTGGGTCCGCCATCCGTTGGTGCACAG CAAGAGGTTTATACTGCAGAACAAGGCCACCTGTTTGGCCGCCGAACTAC TTGCTCCGCCGTCTGGGGCCACTGTGCTGGATATGTGCGCAGCTCCCGGT ATGAAGACAGTGCACATATGCAATGTGATGCAGAACAAGGGATGCATCTA CTCCGTGGAGCAGGACCACGTACGCTACAATACGCTGTGCGAAATAACAA AGGATGCTGGTTGCGATATTGTAAAACCCATTTTGGGAGACGCCTTGAAC CTAACACCCGAACGCTTTCCGGACGTAGAGTACATCCTGGTGGACCCTAG TTGCTCTGGCAGCGGAATGCAAAACCGCATGACCGTGTGCGACGAGCCGA AGGAGGACAAGCGGCTGCAAAAGCTGCAGGGTTTGCAAATTAAGATCCTG TCGCACGCGATGGGCGCCTTTCCGAACGTCAAACGCATTGCCTACTGCAC GTGTTCGCTGTGGAAGGAGGAAAACGAGCAGGTGGTGCAGCGTTGTCTTC AGCTAAATCCATCCTTCAAGCTGCTCAGCTGCAAGAAGGCCTTGCGCAAC AAGTGGCACAATGTGGGCGACAAGGACTATCCCAATATTGGCAAGAACGT CCTGTATTGCCAGCCGGACAGTGATCTTACCGATGGCATCTTCCTGGCCC TTTTCGAGAAACGCCGCGAGGGCGAAAAGGATTAGTTGTTTCAAACGCAA GAAGGACATTTGTTTCCTTAAATTGTAACCATTTCTTTATTTGGCACTCG AGCCATTGAATTTTTCATTTTCAGAATATGTGTACACATTTTTTAAAAAA ATAAAAAAATTATATAATGAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 14984058..14984623 | 1469..905 | 2780 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 14984687..14985186 | 904..405 | 2470 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 14985750..14985999 | 406..157 | 1235 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 14986076..14986231 | 156..1 | 750 | 98.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 19160099..19160663 | 1469..905 | 2825 | 100 | Minus |
3R | 32079331 | 3R | 19160727..19161226 | 904..405 | 2500 | 100 | Minus |
3R | 32079331 | 3R | 19161790..19162039 | 406..157 | 1250 | 100 | Minus |
3R | 32079331 | 3R | 19162116..19162271 | 156..1 | 780 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 18900930..18901494 | 1469..905 | 2825 | 100 | Minus |
3R | 31820162 | 3R | 18901558..18902057 | 904..405 | 2500 | 100 | Minus |
3R | 31820162 | 3R | 18902621..18902870 | 406..157 | 1250 | 100 | Minus |
3R | 31820162 | 3R | 18902947..18903102 | 156..1 | 780 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 14984097..14984623 | 905..1431 | 100 | <- | Minus |
chr3R | 14984687..14985184 | 407..904 | 99 | <- | Minus |
chr3R | 14985750..14985999 | 157..406 | 99 | <- | Minus |
chr3R | 14986076..14986231 | 1..156 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42358-RA | 1..1302 | 34..1335 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42358-RA | 1..1302 | 34..1335 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42358-RA | 1..1302 | 34..1335 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5558-RA | 1..1302 | 34..1335 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42358-RA | 1..1302 | 34..1335 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42358-RA | 8..1476 | 1..1469 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42358-RA | 8..1476 | 1..1469 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42358-RA | 30..1498 | 1..1469 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5558-RA | 8..1476 | 1..1469 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42358-RA | 30..1498 | 1..1469 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 19160099..19160663 | 905..1469 | 100 | <- | Minus |
3R | 19160727..19161224 | 407..904 | 100 | <- | Minus |
3R | 19161790..19162039 | 157..406 | 100 | <- | Minus |
3R | 19162116..19162271 | 1..156 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 19160099..19160663 | 905..1469 | 100 | <- | Minus |
3R | 19160727..19161224 | 407..904 | 100 | <- | Minus |
3R | 19161790..19162039 | 157..406 | 100 | <- | Minus |
3R | 19162116..19162271 | 1..156 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 19160099..19160663 | 905..1469 | 100 | <- | Minus |
3R | 19160727..19161224 | 407..904 | 100 | <- | Minus |
3R | 19161790..19162039 | 157..406 | 100 | <- | Minus |
3R | 19162116..19162271 | 1..156 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 14985821..14986385 | 905..1469 | 100 | <- | Minus |
arm_3R | 14986449..14986946 | 407..904 | 100 | <- | Minus |
arm_3R | 14987512..14987761 | 157..406 | 100 | <- | Minus |
arm_3R | 14987838..14987993 | 1..156 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18902947..18903102 | 1..156 | 100 | Minus | |
3R | 18900930..18901494 | 905..1469 | 100 | <- | Minus |
3R | 18901558..18902055 | 407..904 | 100 | <- | Minus |
3R | 18902621..18902870 | 157..406 | 100 | <- | Minus |
Translation from 0 to 1334
> LD16340.hyp RKQHIHVHVTTMSKKPHSIKVPTQYRATAKILKAALEQQKCIKTLIFAEK HARTRSLHTVLKKFSENRVALEKAIEETGLLRDNPSFDPSLAKILVTELL FGRKELNGESKPVQTVRSYKDRLLNSIRDFGVQRKEPNPRYVRINTNLYS LAEALDYLHKSDWRRKELPADASYADFLTAIKSLAENEFMTDLHVEGVLI FPAKWSNYWVRHPLVHSKRFILQNKATCLAAELLAPPSGATVLDMCAAPG MKTVHICNVMQNKGCIYSVEQDHVRYNTLCEITKDAGCDIVKPILGDALN LTPERFPDVEYILVDPSCSGSGMQNRMTVCDEPKEDKRLQKLQGLQIKIL SHAMGAFPNVKRIAYCTCSLWKEENEQVVQRCLQLNPSFKLLSCKKALRN KWHNVGDKDYPNIGKNVLYCQPDSDLTDGIFLALFEKRREGEKD*
Translation from 33 to 1334
> LD16340.pep MSKKPHSIKVPTQYRATAKILKAALEQQKCIKTLIFAEKHARTRSLHTVL KKFSENRVALEKAIEETGLLRDNPSFDPSLAKILVTELLFGRKELNGESK PVQTVRSYKDRLLNSIRDFGVQRKEPNPRYVRINTNLYSLAEALDYLHKS DWRRKELPADASYADFLTAIKSLAENEFMTDLHVEGVLIFPAKWSNYWVR HPLVHSKRFILQNKATCLAAELLAPPSGATVLDMCAAPGMKTVHICNVMQ NKGCIYSVEQDHVRYNTLCEITKDAGCDIVKPILGDALNLTPERFPDVEY ILVDPSCSGSGMQNRMTVCDEPKEDKRLQKLQGLQIKILSHAMGAFPNVK RIAYCTCSLWKEENEQVVQRCLQLNPSFKLLSCKKALRNKWHNVGDKDYP NIGKNVLYCQPDSDLTDGIFLALFEKRREGEKD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18939-PA | 433 | GF18939-PA | 1..433 | 1..433 | 1772 | 74.6 | Plus |
Dana\GF11004-PA | 441 | GF11004-PA | 210..397 | 210..395 | 199 | 28.4 | Plus |
Dana\GF12515-PA | 896 | GF12515-PA | 352..648 | 136..426 | 171 | 24 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16141-PA | 532 | GG16141-PA | 239..532 | 140..433 | 1391 | 86.4 | Plus |
Dere\GG16141-PA | 532 | GG16141-PA | 1..104 | 1..104 | 461 | 85.6 | Plus |
Dere\GG20307-PA | 897 | GG20307-PA | 424..644 | 209..426 | 165 | 24.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18476-PA | 433 | GH18476-PA | 1..433 | 1..433 | 1778 | 74.6 | Plus |
Dgri\GH16775-PA | 449 | GH16775-PA | 214..399 | 210..387 | 184 | 28.7 | Plus |
Dgri\GH21314-PA | 843 | GH21314-PA | 352..595 | 136..373 | 171 | 26.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nsun5-PA | 433 | CG5558-PA | 1..433 | 1..433 | 2279 | 100 | Plus |
CG8545-PA | 891 | CG8545-PA | 417..584 | 209..373 | 158 | 26.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24054-PA | 433 | GI24054-PA | 1..433 | 1..433 | 1728 | 72.7 | Plus |
Dmoj\GI13435-PA | 443 | GI13435-PA | 210..441 | 210..429 | 184 | 28.6 | Plus |
Dmoj\GI19747-PA | 839 | GI19747-PA | 331..574 | 136..373 | 168 | 25.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23704-PA | 433 | GL23704-PA | 1..433 | 1..433 | 1791 | 74.8 | Plus |
Dper\GL24972-PA | 438 | GL24972-PA | 206..437 | 204..426 | 180 | 27.1 | Plus |
Dper\GL10113-PA | 934 | GL10113-PA | 424..644 | 209..426 | 162 | 25.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18969-PA | 433 | GA18969-PA | 1..433 | 1..433 | 1792 | 74.8 | Plus |
Dpse\GA10764-PA | 438 | GA10764-PA | 206..437 | 204..426 | 179 | 27.2 | Plus |
Dpse\GA21153-PA | 934 | GA21153-PA | 424..644 | 209..426 | 161 | 25.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10043-PA | 534 | GM10043-PA | 241..534 | 140..433 | 1479 | 90.1 | Plus |
Dsec\GM10043-PA | 534 | GM10043-PA | 1..104 | 1..104 | 516 | 98.1 | Plus |
Dsec\GM21395-PA | 865 | GM21395-PA | 410..617 | 209..402 | 163 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20129-PA | 534 | GD20129-PA | 241..534 | 140..433 | 1475 | 89.8 | Plus |
Dsim\GD20129-PA | 534 | GD20129-PA | 1..104 | 1..104 | 514 | 97.1 | Plus |
Dsim\GD15057-PA | 440 | GD15057-PA | 210..379 | 210..368 | 150 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23680-PA | 433 | GJ23680-PA | 1..431 | 1..431 | 1756 | 74 | Plus |
Dvir\GJ11797-PA | 413 | GJ11797-PA | 183..361 | 210..381 | 183 | 31.1 | Plus |
Dvir\GJ18081-PA | 840 | GJ18081-PA | 336..579 | 136..373 | 176 | 26.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13235-PA | 440 | GK13235-PA | 1..440 | 1..433 | 1625 | 69.9 | Plus |
Dwil\GK20395-PA | 457 | GK20395-PA | 217..396 | 210..381 | 180 | 27.8 | Plus |
Dwil\GK17973-PA | 866 | GK17973-PA | 324..567 | 136..373 | 166 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25147-PA | 532 | GE25147-PA | 239..532 | 140..433 | 1403 | 85.7 | Plus |
Dyak\GE25147-PA | 532 | GE25147-PA | 1..104 | 1..104 | 456 | 83.7 | Plus |
Dyak\GE12467-PA | 902 | GE12467-PA | 427..647 | 209..426 | 165 | 24.9 | Plus |
Dyak\GE22645-PA | 440 | GE22645-PA | 204..391 | 204..380 | 151 | 26.7 | Plus |