Clone LD16356 Report

Search the DGRC for LD16356

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:163
Well:56
Vector:pBS SK-
Associated Gene/TranscriptRanGAP-RA
Protein status:LD16356.pep: gold
Preliminary Size:1934
Sequenced Size:2012

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9999 2001-01-01 Release 2 assignment
CG9999 2001-10-10 Blastp of sequenced clone
CG9999 2003-01-01 Sim4 clustering to Release 3
RanGap 2008-04-29 Release 5.5 accounting
RanGap 2008-08-15 Release 5.9 accounting
RanGap 2008-12-18 5.12 accounting

Clone Sequence Records

LD16356.complete Sequence

2012 bp (2012 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061219

> LD16356.complete
CAATGCCAAAATTCTAGCGCCCATTTTTGCGAGGTTAAAATAAATTTCGC
AAGCCGGCTGCAATCGCAAAGTACAGTGCGACTTATATACACTCGTATAA
AATAATTCCATTTAAAAGCAAGCATGTCCACCTTTAACTTCGCCAGCATG
GCCGCCCAACTGGGCCAGGAGCAGGGAATATCATTCGAGAACAAGGTGCT
TTCCTGGAACACAGCTGCCGATGTCCAGGATGTGGTGGATGCCCTTAACA
AACAGACCACCGTGCACTATCTGAATCTGGACGGGAACACACTGGGCGTT
GAGGCCGCCAAGGCGATTGGTGAGGGTCTGAAGCGTCATCCAGAGTTTCG
GAAGGCGCTGTGGAAGAACATGTTTACTGGTCGTCTCATATCGGAGATTC
CGGAGGCACTCAAGCACCTGGGAGCCGCGCTAATTGTCGCGGGCGCCAAA
CTGACAGTCCTGGATCTCAGCGACAATGCCTTAGGACCGAATGGCATGCG
AGGCTTAGAGGAGTTACTGCGATCCCCGGTCTGCTACTCGCTGCAGGAGC
TGCTGCTGTGCAATTGTGGCCTTGGTCCCGAGGGCGGTAGTATGCTGTCC
CGGGCTCTGATCGATCTGCATGCCAATGCCAACAAGGCGGGCTTCCCGCT
CCAGCTGCGTGTGTTCATAGGTTCGCGCAATCGTCTCGAGGATGCCGGTG
CTACGGAAATGGCAACCGCATTCCAAACCCTCAAGACCTTCGAGGAGATT
GTTCTGGAGCAAAACTCCATTTACATCGAAGGCGTCGAGGCCCTTGCCGA
ATCCTTCAAGCATAATCCTCATCTACGAGTGCTAAACATGAACGACAATA
CTCTAAAGTCCGAGGGAGCTGAAAAAATAGCTGAGGCTCTTCCCTTCTTG
CCACTGCTGCGTGAAATGAGCTTTGGAGACTGCCTGATCAAAACTAATGG
CGCCTACCACTTCGGTGAGGCTCTGGAGAGAGGAAACGAACGACTGGAAG
TTATCGACTTAGGTTTTAACGAAATCAACAGCGACGGCGGCTTGGTGTTG
GTGAATGCTATGGGAAACAAGCCCAAGCTACGCATCTTGAATCTAGATGG
CAATAGCTTTGGAGAAGAAGGCAGCGAGAAGATAATCAGCGAGATGAGTA
AGTTGCCAACTGCTGCCGCACTGCAACCGTTTCAGCACCAGGAAGAGGAG
GATTTGGAAGATGAATACCAGGCTGACAAGCAGGACGCAGATTACGAAGA
GGAAGAGGAAGTACACGAGCACGCCAACGATACTACCGAAGAAGCAGATG
AGGATAGCGAGGGCGACGAGGACGACGAGGAAGACGAGGGAGACGAGGAG
TACAGCAACGTCGCGGAGGAGACTGCCTATGTCACTACGAATGCCTACAC
GACCAAGCTTTTTAACGACACAACCAACTCGATGGCCAGCGAAACTTTTG
CGGTCGCGAACAAGACGATCAGCCAAAAATGCACTCCAGAGAAGTTCTGT
TTGAGCCAGAAACCCTGCTCCCAGGAAGATTTCGATTCGCTAGATATGGA
TAACAAACTTGAGGCTTTGCAGTCGATTGTCAACCAATTCACCGGCGACA
ACCATTTGCTACTGCTCGTCTTCACCACCTTGAAGTGCGCGCATTTGTCG
CAATCCTCGAAAGCTGCGTTGGATCTGGCCGTCTCCTTGTACCAGGCCAC
CTTTGACTATGCCATCAAGACAAAGCAGGAGACACGTGTACTCAACTATG
TACTGATGCAGCTCCGTTTGTTGCCCTGCAAGGAGGTATTCCATTCGGAC
TACGATGTCAAGAACTGTCGATTTGCTCTTCGCGAGGCTCTCAAGCAACC
AACGTTTGCCAACGACAACATTAAGAATTCCTTTAAGACTTTCCTGGAGG
GTGCGGAGTCGTAAAGAGAATTAGAGAAGAGATTACCTTTATTTCCCACT
TTCCGATTTGTGTAGCTTTCGCGAATAAAAACGTATTATTCCTAAAAAAA
AAAAAAAAAAAA

LD16356.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
RanGap-RA 2423 RanGap-RA 424..2418 1..1995 9975 100 Plus
RanGap.b 1944 RanGap.b 70..1944 119..1993 9375 100 Plus
RanGap.a 2165 RanGap.a 313..2161 147..1995 9245 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19443878..19444561 223..906 3420 100 Plus
chr2L 23010047 chr2L 19444631..19445132 906..1407 2510 100 Plus
chr2L 23010047 chr2L 19445443..19445851 1585..1993 2045 100 Plus
chr2L 23010047 chr2L 19443597..19443819 1..223 1115 100 Plus
chr2L 23010047 chr2L 19445208..19445386 1406..1584 895 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:04:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19445344..19446027 223..906 3420 100 Plus
2L 23513712 2L 19446097..19446598 906..1407 2510 100 Plus
2L 23513712 2L 19446909..19447319 1585..1995 2055 100 Plus
2L 23513712 2L 19445063..19445285 1..223 1115 100 Plus
2L 23513712 2L 19446674..19446852 1406..1584 895 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19445344..19446027 223..906 3420 100 Plus
2L 23513712 2L 19446097..19446598 906..1407 2510 100 Plus
2L 23513712 2L 19446909..19447319 1585..1995 2055 100 Plus
2L 23513712 2L 19445063..19445285 1..223 1115 100 Plus
2L 23513712 2L 19446674..19446852 1406..1584 895 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:24:26 has no hits.

LD16356.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:25:35 Download gff for LD16356.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19443597..19443819 1..223 100 -> Plus
chr2L 19443879..19444560 224..905 100 -> Plus
chr2L 19444631..19445132 906..1407 93 -> Plus
chr2L 19445210..19445386 1408..1584 100 -> Plus
chr2L 19445443..19445851 1585..1993 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:51:18 Download gff for LD16356.complete
Subject Subject Range Query Range Percent Splice Strand
RanGap-RA 1..1791 124..1914 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:41:18 Download gff for LD16356.complete
Subject Subject Range Query Range Percent Splice Strand
RanGap-RA 1..1791 124..1914 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:02:09 Download gff for LD16356.complete
Subject Subject Range Query Range Percent Splice Strand
RanGAP-RA 1..1791 124..1914 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:10:15 Download gff for LD16356.complete
Subject Subject Range Query Range Percent Splice Strand
RanGap-RA 1..1791 124..1914 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:29 Download gff for LD16356.complete
Subject Subject Range Query Range Percent Splice Strand
RanGAP-RA 1..1791 124..1914 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:23:13 Download gff for LD16356.complete
Subject Subject Range Query Range Percent Splice Strand
RanGap-RA 327..2319 1..1993 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:41:18 Download gff for LD16356.complete
Subject Subject Range Query Range Percent Splice Strand
RanGap-RA 327..2319 1..1993 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:02:09 Download gff for LD16356.complete
Subject Subject Range Query Range Percent Splice Strand
RanGAP-RA 409..2401 1..1993 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:10:15 Download gff for LD16356.complete
Subject Subject Range Query Range Percent Splice Strand
RanGap-RA 327..2319 1..1993 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:29 Download gff for LD16356.complete
Subject Subject Range Query Range Percent Splice Strand
RanGAP-RA 409..2401 1..1993 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:35 Download gff for LD16356.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19445063..19445285 1..223 100 -> Plus
2L 19445345..19446026 224..905 100 -> Plus
2L 19446097..19446598 906..1407 100 -> Plus
2L 19446676..19446852 1408..1584 100 -> Plus
2L 19446909..19447317 1585..1993 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:35 Download gff for LD16356.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19445063..19445285 1..223 100 -> Plus
2L 19445345..19446026 224..905 100 -> Plus
2L 19446097..19446598 906..1407 100 -> Plus
2L 19446676..19446852 1408..1584 100 -> Plus
2L 19446909..19447317 1585..1993 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:35 Download gff for LD16356.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19445063..19445285 1..223 100 -> Plus
2L 19445345..19446026 224..905 100 -> Plus
2L 19446097..19446598 906..1407 100 -> Plus
2L 19446676..19446852 1408..1584 100 -> Plus
2L 19446909..19447317 1585..1993 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:02:09 Download gff for LD16356.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19445063..19445285 1..223 100 -> Plus
arm_2L 19445345..19446026 224..905 100 -> Plus
arm_2L 19446097..19446598 906..1407 100 -> Plus
arm_2L 19446676..19446852 1408..1584 100 -> Plus
arm_2L 19446909..19447317 1585..1993 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:46:27 Download gff for LD16356.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19445063..19445285 1..223 100 -> Plus
2L 19445345..19446026 224..905 100 -> Plus
2L 19446097..19446598 906..1407 100 -> Plus
2L 19446676..19446852 1408..1584 100 -> Plus
2L 19446909..19447317 1585..1993 100   Plus

LD16356.pep Sequence

Translation from 123 to 1913

> LD16356.pep
MSTFNFASMAAQLGQEQGISFENKVLSWNTAADVQDVVDALNKQTTVHYL
NLDGNTLGVEAAKAIGEGLKRHPEFRKALWKNMFTGRLISEIPEALKHLG
AALIVAGAKLTVLDLSDNALGPNGMRGLEELLRSPVCYSLQELLLCNCGL
GPEGGSMLSRALIDLHANANKAGFPLQLRVFIGSRNRLEDAGATEMATAF
QTLKTFEEIVLEQNSIYIEGVEALAESFKHNPHLRVLNMNDNTLKSEGAE
KIAEALPFLPLLREMSFGDCLIKTNGAYHFGEALERGNERLEVIDLGFNE
INSDGGLVLVNAMGNKPKLRILNLDGNSFGEEGSEKIISEMSKLPTAAAL
QPFQHQEEEDLEDEYQADKQDADYEEEEEVHEHANDTTEEADEDSEGDED
DEEDEGDEEYSNVAEETAYVTTNAYTTKLFNDTTNSMASETFAVANKTIS
QKCTPEKFCLSQKPCSQEDFDSLDMDNKLEALQSIVNQFTGDNHLLLLVF
TTLKCAHLSQSSKAALDLAVSLYQATFDYAIKTKQETRVLNYVLMQLRLL
PCKEVFHSDYDVKNCRFALREALKQPTFANDNIKNSFKTFLEGAES*

LD16356.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14235-PA 596 GF14235-PA 4..592 2..592 2168 70.7 Plus
Dana\GF20782-PA 375 GF20782-PA 5..362 15..378 883 49.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21182-PA 591 GG21182-PA 3..590 1..595 2487 82 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11099-PA 601 GH11099-PA 1..597 1..592 1850 63.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
RanGAP-PB 596 CG9999-PB 1..596 1..596 3056 100 Plus
RanGAP-PA 596 CG9999-PA 1..596 1..596 3056 100 Plus
RanGAP-PC 588 CG9999-PC 1..588 9..596 3016 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18223-PA 602 GI18223-PA 6..598 1..592 1913 62.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21210-PA 583 GL21210-PA 3..583 1..596 1958 68.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22178-PA 583 GA22178-PA 3..583 1..596 1956 68.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17349-PA 602 GM17349-PA 3..602 1..596 2669 87.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12035-PA 122 GD12035-PA 1..122 475..596 627 95.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18130-PA 609 GJ18130-PA 1..605 1..592 1935 63.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24798-PA 585 GK24798-PA 1..581 1..592 1923 63.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13255-PA 591 GE13255-PA 3..590 1..595 2499 82 Plus

LD16356.hyp Sequence

Translation from 123 to 1913

> LD16356.hyp
MSTFNFASMAAQLGQEQGISFENKVLSWNTAADVQDVVDALNKQTTVHYL
NLDGNTLGVEAAKAIGEGLKRHPEFRKALWKNMFTGRLISEIPEALKHLG
AALIVAGAKLTVLDLSDNALGPNGMRGLEELLRSPVCYSLQELLLCNCGL
GPEGGSMLSRALIDLHANANKAGFPLQLRVFIGSRNRLEDAGATEMATAF
QTLKTFEEIVLEQNSIYIEGVEALAESFKHNPHLRVLNMNDNTLKSEGAE
KIAEALPFLPLLREMSFGDCLIKTNGAYHFGEALERGNERLEVIDLGFNE
INSDGGLVLVNAMGNKPKLRILNLDGNSFGEEGSEKIISEMSKLPTAAAL
QPFQHQEEEDLEDEYQADKQDADYEEEEEVHEHANDTTEEADEDSEGDED
DEEDEGDEEYSNVAEETAYVTTNAYTTKLFNDTTNSMASETFAVANKTIS
QKCTPEKFCLSQKPCSQEDFDSLDMDNKLEALQSIVNQFTGDNHLLLLVF
TTLKCAHLSQSSKAALDLAVSLYQATFDYAIKTKQETRVLNYVLMQLRLL
PCKEVFHSDYDVKNCRFALREALKQPTFANDNIKNSFKTFLEGAES*

LD16356.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
RanGAP-PB 596 CG9999-PB 1..596 1..596 3056 100 Plus
RanGAP-PA 596 CG9999-PA 1..596 1..596 3056 100 Plus
RanGAP-PC 588 CG9999-PC 1..588 9..596 3016 100 Plus