BDGP Sequence Production Resources |
Search the DGRC for LD16402
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 164 |
Well: | 2 |
Vector: | pBS SK- |
Associated Gene/Transcript | Prosbeta3-RA |
Protein status: | LD16402.pep: gold |
Preliminary Size: | 1109 |
Sequenced Size: | 935 |
Gene | Date | Evidence |
---|---|---|
CG11981 | 2001-01-01 | Release 2 assignment |
CG11981 | 2002-04-04 | Blastp of sequenced clone |
CG11981 | 2003-01-01 | Sim4 clustering to Release 3 |
Prosbeta3 | 2008-04-29 | Release 5.5 accounting |
Prosbeta3 | 2008-08-15 | Release 5.9 accounting |
Prosbeta3 | 2008-12-18 | 5.12 accounting |
935 bp (935 high quality bases) assembled on 2002-04-04
GenBank Submission: AY095029
> LD16402.complete TTCTATACAGCCAGTCAGTATTAGCCCATCTTACACTCGCAGTCTGGCAA CGCAGAGCAGAAACAAAAAGTCATCTTCCCAGGCGGCTTTTAGCATTTTG CAAAATTTCCATTTTTCTGCTGATTAAATTGAGCTAAGCGAATAGCAACG ACACCATGTCGATTCTAGCCTACAACGGAGGATGTGTAGTGGCCATGCGC GGAAAGGACTGCGTGGCGATTGCCACGGATCACCGATTCGGCATTCAGGC TCAGACGATCTCCACGGACTTCAAGAAGGTGTTCCACATCGGCCCACGGA TGTTCCTCGGGCTCACAGGCCTGCAGACGGACATCCTTACTGTTCGCGAT CGCCTGATGTTCCGCAAGAATCTGTACGAGACACGCGAAAACCGTGAAAT GTGTCCCAAGCCCTTCTCGGCCATGATGTCCAGCTTTCTGTACGAGCACC GCTTTGGCCCGTACTTCATTGAGCCGGTCGTTGCTGGCCTGGATCCCAAG ACCATGGAGCCTTTTATCTGCAACATGGACCTGATCGGCTGCCCCAACGC ACCCGATGACTTCGTTGTGGCCGGCACCTGTGCGGAGCAATTGTATGGCA TGTGCGAAACCCTGTGGAAACCCGATCTCGAGCCGGACCAGCTGTTTGAG GTCATCGCCCAGTCCATTGTGAACGCATTCGATCGCGACGCCATGAGCGG TTGGGGTGCCACCGTCTACATTATCGAGAAGGACAAGATCACGGAGCGCA CACTGAAGACCCGCATGGACTAGATGATGTTAGAGGTTCCCTTGGTGATT TTGTATACATTAACCGAAATACACATACAAATAAAATTTGTTTAGGTACA ACATGTGCGTATTTCTTTTCCGTATAACGTAATAACACCAGAATTAAATG CGTAATAACACCAGAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Prosbeta3-RA | 914 | Prosbeta3-RA | 1..914 | 1..914 | 4570 | 100 | Plus |
nc_15461.a | 565 | nc_15461.a | 78..565 | 533..46 | 2440 | 100 | Minus |
nc_15461.a | 565 | nc_15461.a | 1..82 | 657..576 | 410 | 100 | Minus |
CG11980-RA | 1294 | CG11980-RA | 1221..1294 | 916..843 | 370 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 4831207..4832120 | 914..1 | 4570 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 9005311..9006226 | 916..1 | 4580 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 8746142..8747057 | 916..1 | 4580 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4831207..4832120 | 1..914 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prosbeta3-RA | 1..618 | 156..773 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prosbeta3-RA | 1..618 | 156..773 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prosbeta3-RA | 1..618 | 156..773 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prosbeta3-RA | 1..618 | 156..773 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prosbeta3-RA | 1..618 | 156..773 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prosbeta3-RA | 1..914 | 1..914 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prosbeta3-RA | 1..914 | 1..914 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prosbeta3-RA | 1..914 | 1..914 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prosbeta3-RA | 1..914 | 1..914 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prosbeta3-RA | 1..914 | 1..914 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9005313..9006226 | 1..914 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9005313..9006226 | 1..914 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9005313..9006226 | 1..914 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4831035..4831948 | 1..914 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8746144..8747057 | 1..914 | 100 | Minus |
Translation from 155 to 772
> LD16402.hyp MSILAYNGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMF LGLTGLQTDILTVRDRLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRF GPYFIEPVVAGLDPKTMEPFICNMDLIGCPNAPDDFVVAGTCAEQLYGMC ETLWKPDLEPDQLFEVIAQSIVNAFDRDAMSGWGATVYIIEKDKITERTL KTRMD*
Translation from 155 to 772
> LD16402.pep MSILAYNGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMF LGLTGLQTDILTVRDRLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRF GPYFIEPVVAGLDPKTMEPFICNMDLIGCPNAPDDFVVAGTCAEQLYGMC ETLWKPDLEPDQLFEVIAQSIVNAFDRDAMSGWGATVYIIEKDKITERTL KTRMD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18436-PA | 205 | GF18436-PA | 1..205 | 1..205 | 1053 | 93.7 | Plus |
Dana\GF10515-PA | 235 | GF10515-PA | 28..235 | 7..205 | 217 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17403-PA | 205 | GG17403-PA | 1..205 | 1..205 | 1107 | 100 | Plus |
Dere\GG15866-PA | 235 | GG15866-PA | 28..235 | 7..205 | 192 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18224-PA | 205 | GH18224-PA | 1..205 | 1..205 | 1064 | 94.1 | Plus |
Dgri\GH19348-PA | 200 | GH19348-PA | 7..198 | 6..203 | 456 | 42.4 | Plus |
Dgri\GH16458-PA | 235 | GH16458-PA | 28..235 | 7..205 | 237 | 30.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Prosbeta3-PA | 205 | CG11981-PA | 1..205 | 1..205 | 1094 | 100 | Plus |
Prosbeta6-PA | 235 | CG4097-PA | 28..235 | 7..205 | 197 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10178-PA | 205 | GI10178-PA | 1..205 | 1..205 | 1065 | 94.1 | Plus |
Dmoj\GI22558-PA | 203 | GI22558-PA | 7..203 | 9..205 | 613 | 52.3 | Plus |
Dmoj\GI16713-PA | 235 | GI16713-PA | 28..235 | 7..205 | 216 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12496-PA | 205 | GL12496-PA | 1..205 | 1..205 | 1066 | 94.1 | Plus |
Dper\GL26359-PA | 204 | GL26359-PA | 4..204 | 8..205 | 654 | 57.2 | Plus |
Dper\GL19755-PA | 198 | GL19755-PA | 3..187 | 2..192 | 375 | 39.1 | Plus |
Dper\GL17976-PA | 235 | GL17976-PA | 28..235 | 7..205 | 189 | 26.5 | Plus |
Dper\GL20944-PA | 224 | GL20944-PA | 13..222 | 7..205 | 160 | 23.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11308-PA | 205 | GA11308-PA | 1..205 | 1..205 | 1066 | 94.1 | Plus |
Dpse\GA28829-PA | 204 | GA28829-PA | 4..204 | 8..205 | 659 | 57.7 | Plus |
Dpse\GA27033-PA | 198 | GA27033-PA | 3..187 | 2..192 | 382 | 39.3 | Plus |
Dpse\GA17955-PA | 235 | GA17955-PA | 28..235 | 7..205 | 189 | 26.5 | Plus |
Dpse\GA28639-PA | 216 | GA28639-PA | 13..214 | 7..205 | 168 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26292-PA | 205 | GM26292-PA | 1..205 | 1..205 | 1107 | 100 | Plus |
Dsec\GM19273-PA | 82 | GM19273-PA | 1..82 | 124..205 | 432 | 98.8 | Plus |
Dsec\GM24382-PA | 235 | GM24382-PA | 28..235 | 7..205 | 217 | 29.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20828-PA | 205 | GD20828-PA | 1..205 | 1..205 | 1107 | 100 | Plus |
Dsim\GD12455-PA | 235 | GD12455-PA | 28..235 | 7..205 | 217 | 29.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10880-PA | 205 | GJ10880-PA | 1..205 | 1..205 | 1071 | 95.1 | Plus |
Dvir\GJ23747-PA | 208 | GJ23747-PA | 7..208 | 4..205 | 755 | 60.4 | Plus |
Dvir\GJ12457-PA | 235 | GJ12457-PA | 28..235 | 7..205 | 229 | 30.8 | Plus |
Dvir\GJ15696-PA | 256 | GJ15696-PA | 48..256 | 7..205 | 177 | 27.9 | Plus |
Dvir\GJ15881-PA | 262 | GJ15881-PA | 54..262 | 7..205 | 177 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11424-PA | 205 | GK11424-PA | 1..205 | 1..205 | 1046 | 91.2 | Plus |
Dwil\GK20318-PA | 233 | GK20318-PA | 26..233 | 7..205 | 199 | 28.4 | Plus |
Dwil\GK16137-PA | 229 | GK16137-PA | 29..229 | 7..205 | 190 | 28.1 | Plus |