Clone LD16414 Report

Search the DGRC for LD16414

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:164
Well:14
Vector:pBS SK-
Associated Gene/Transcriptslow-RA
Protein status:LD16414.pep: gold
Preliminary Size:2449
Sequenced Size:2369

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7447 2001-01-01 Release 2 assignment
CG7447 2001-10-10 Blastp of sequenced clone
CG7447 2003-01-01 Sim4 clustering to Release 3
CG7447 2008-04-29 Release 5.5 accounting
CG7447 2008-08-15 Release 5.9 accounting
CG7447 2008-12-18 5.12 accounting

Clone Sequence Records

LD16414.complete Sequence

2369 bp (2369 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061220

> LD16414.complete
GACTTCTAAGCGATCGGTTTGGATTTCGTTAGCTCCGCCGCGCCAGCTGG
AAATTTGTATCTCAAAGATCGCAGCCAGTTCGCTCGGTTTTTGTGCCTGG
CATACGGAAGCGGCTAACGCAGAATCCGGAAAATCACAAGAGCCGTATAT
ATTTCACAAATATATATATATAGTATGTTTCGAAAAGGCCCATTCACGGC
CATTAAAATATTTTATTGTACAAAAAAGGCACAGTGCCGCGTATCTGCTT
AATGTCAGCGCGAAAACTCAATTCAATTTATTGTTTGTGATTGCAAATTT
GGCATAATTGTGCTTTGATTTATTCGCGCGTGTTTCGGGTCATCTCTATA
AAGAGGAATTTTAAATCTGGGCAAGATTATCTCTGTTTTTCTCTGAACAC
TGGCTGGGTCAGTTGGAATTTGTTCGCCGTGTTGCCATCGAGTGAATTAA
GGTAGCGGGACGCCAGCATCAAAATGCCAGAAATGATTTACTCGAGCTCT
TTCCTGCTGCTCTGTTGCACAATCCTGCTGCTGGGAACAGTACAGAATGC
CGGTTCCAATAGCACCAGCCCTCATCCTCACCAGAATCAAACTCATCGCG
GACATGGTCACAGTCATCGAACGCGTCATCAGGGCAACTATTTGGCCACC
CATCAAAGGCAGCAGCGCAGACTGCAGTCGCTGAATCAAGCCAAATCGGA
TGTGGAGCTGCTGCCCGGGGTCACCATGCACGAGGTCACCAGATTACGAC
GGGTTCAGCCACATAATCCCTACAATAAAGTGCAGACACGACGCCTACAC
CAATCGCGAAACCCCACCGAATGGGATTACAATACTTACAACATCATGAC
CAACACGTTCGGTCCACCGCCACCGCCGATGCCGTTGTCACCGCGATATG
GAAAGGGCGAGGATAATACCCAGGATGTTGAGTTTATCGGGGTGCGAGAA
CGTGGAAGGGGTTACTCATTCGTGCCATCGGTAACGGTCACCACTGCTCC
GCCACCGAATCTGAATCGAAGATCCGCGAGTCCTGGTTCTCGCAGTAGCA
TCGGCACTATTCCACCACTGGTTCCGGCCAGAAGGGGCTATAGCTACACC
ACCACCACAAGTTCTCCTCCAGTGAACACCATCACCACTGACAATCCCTT
CGAGACGAACACCATTGGTCGAGGCTATCCCACAGATCCCAAGGAAATGG
AAAGGCGGCACATTTGCATGCAACAGCGAACGGTTACGATGCCCGTGAAG
CGAACGGAGGTCTACAGTCGTCCCACCTGGAAGCACGTGGCCACGCCCTG
CCAGCCGCCCACCTTTAGTGGCCAGAAGTGCACCAGGGTGCAGGTGGTCC
ACGAGCAGGCCTACAGGGACGTCATCGATCACAAGACCGCCCAGCAGATG
ACCTACGACTGCTGCACGGGATGGAGCCGGGAAAACCCAAGGTCGGATTC
GTGCATGAAACCTATTTGCTCCGCGCGCTGCCAAAACGGTGGCAATTGTA
CGGCTCCTAGCACCTGCAGCTGTCCAACTGGTTTCACAGGACGTTTCTGC
GAGCAGGATGTGGACGAGTGCCAGACGGAGAAGCCATGCGATCAACAGTG
CATCAATACGCATGGATCTTACTTCTGCCGCTGCCGTCAGGGATTCGTTC
TCCAGTCGGATCAGCAGAGCTGCAAGAAGGTGTCCACGAATGCGGACGAT
GCGTTCGAGGCTCGGGATCTGGAGAACGATATCGATGATACGGACGCGGA
GGTGGCCACGCGACTCCAGAAGATCGAAAAGTCCTTGGCCAATGAGCGAG
TGCACACGAACGAGCTGCAAAAGTCGCTGCAGGCCACCTACAGTGTGGTG
GACACACTCAAGAGTCGGCTAAGCACGCTGGAAAAGCAGGCTCAGGATGT
CAGTCGACTGCAGACGAATCTCTACAAGACAGAGTCCCGGACGAACAAGC
TGGAGGGTATGCTGAACCTGCTGCTGAAGTGCCGGAATGGCCCCAATGCC
AATTGCCCCTAAACAGAACTGCATTTCCCCACGCTATTATTAAATGTTAG
TTAACTTAATTGACCACTCCGTTCATGTGTAGCTAGATGCTCCTGCTTGT
AAGCCATTCCCGAATGCGAGTCGAGTGCCTCTGTAGTCTGTAGAATTAGC
CCACGGATCGGGCTATTAGTACTTAAGCGAGAACGTGTGTCATAAATGTA
TCGAGATGTGAAGTTTTAGACGTAAGCGCACCACCGCACTCTGCACCGCT
CTTCATGTGGGTGGTGCAGTGATTAGTTTCTGCATGTATCTGTATATAAT
TTTAATGTATATGAGAAATCACTGCACGAATAAATGCATTTTCTGATTTT
AAAAAAAAAAAAAAAAAAA

LD16414.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7447-RA 2390 CG7447-RA 36..2387 1..2352 11760 100 Plus
CG7447-RB 2233 CG7447-RB 311..2230 433..2352 9600 100 Plus
CG7447.a 2081 CG7447.a 159..2078 433..2352 9600 100 Plus
CG7447-RB 2233 CG7447-RB 139..310 1..172 860 100 Plus
CG7447.a 2081 CG7447.a 15..158 1..144 720 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4389849..4390624 433..1205 3450 96.6 Plus
chr3L 24539361 chr3L 4402140..4402610 1880..2350 2355 100 Plus
chr3L 24539361 chr3L 4383847..4384278 1..432 2130 99.5 Plus
chr3L 24539361 chr3L 4401654..4402073 1462..1881 2070 99.5 Plus
chr3L 24539361 chr3L 4401327..4401585 1203..1461 1295 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:04:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4390450..4391222 433..1205 3865 100 Plus
3L 28110227 3L 4402711..4403183 1880..2352 2365 100 Plus
3L 28110227 3L 4384456..4384887 1..432 2160 100 Plus
3L 28110227 3L 4402225..4402644 1462..1881 2100 100 Plus
3L 28110227 3L 4401898..4402156 1203..1461 1295 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4390450..4391222 433..1205 3865 100 Plus
3L 28103327 3L 4402711..4403183 1880..2352 2365 100 Plus
3L 28103327 3L 4384456..4384887 1..432 2160 100 Plus
3L 28103327 3L 4402225..4402644 1462..1881 2100 100 Plus
3L 28103327 3L 4401898..4402156 1203..1461 1295 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:21:01 has no hits.

LD16414.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:22:01 Download gff for LD16414.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4401329..4401585 1205..1461 100 -> Plus
chr3L 4383847..4384278 1..432 99 -> Plus
chr3L 4389849..4390623 433..1204 96 -> Plus
chr3L 4401654..4402072 1462..1880 99 -> Plus
chr3L 4402141..4402610 1881..2350 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:59:46 Download gff for LD16414.complete
Subject Subject Range Query Range Percent Splice Strand
CG7447-RB 1..1539 474..2012 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:46:14 Download gff for LD16414.complete
Subject Subject Range Query Range Percent Splice Strand
slow-RB 1..1539 474..2012 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:10 Download gff for LD16414.complete
Subject Subject Range Query Range Percent Splice Strand
slow-RA 1..1539 474..2012 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:58 Download gff for LD16414.complete
Subject Subject Range Query Range Percent Splice Strand
CG7447-RB 1..1539 474..2012 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:53 Download gff for LD16414.complete
Subject Subject Range Query Range Percent Splice Strand
slow-RA 1..1539 474..2012 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:46 Download gff for LD16414.complete
Subject Subject Range Query Range Percent Splice Strand
CG7447-RA 2..2351 1..2350 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:46:14 Download gff for LD16414.complete
Subject Subject Range Query Range Percent Splice Strand
slow-RA 2..2351 1..2350 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:10 Download gff for LD16414.complete
Subject Subject Range Query Range Percent Splice Strand
slow-RA 15..2364 1..2350 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:58 Download gff for LD16414.complete
Subject Subject Range Query Range Percent Splice Strand
CG7447-RA 2..2351 1..2350 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:53 Download gff for LD16414.complete
Subject Subject Range Query Range Percent Splice Strand
slow-RA 15..2364 1..2350 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:22:01 Download gff for LD16414.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4384456..4384887 1..432 100 -> Plus
3L 4390450..4391221 433..1204 100 -> Plus
3L 4401900..4402156 1205..1461 100 -> Plus
3L 4402225..4402643 1462..1880 100 -> Plus
3L 4402712..4403181 1881..2350 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:22:01 Download gff for LD16414.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4384456..4384887 1..432 100 -> Plus
3L 4390450..4391221 433..1204 100 -> Plus
3L 4401900..4402156 1205..1461 100 -> Plus
3L 4402225..4402643 1462..1880 100 -> Plus
3L 4402712..4403181 1881..2350 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:22:01 Download gff for LD16414.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4384456..4384887 1..432 100 -> Plus
3L 4390450..4391221 433..1204 100 -> Plus
3L 4401900..4402156 1205..1461 100 -> Plus
3L 4402225..4402643 1462..1880 100 -> Plus
3L 4402712..4403181 1881..2350 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:10 Download gff for LD16414.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4384456..4384887 1..432 100 -> Plus
arm_3L 4390450..4391221 433..1204 100 -> Plus
arm_3L 4401900..4402156 1205..1461 100 -> Plus
arm_3L 4402225..4402643 1462..1880 100 -> Plus
arm_3L 4402712..4403181 1881..2350 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:51:47 Download gff for LD16414.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4402712..4403181 1881..2350 100   Plus
3L 4384456..4384887 1..432 100 -> Plus
3L 4390450..4391221 433..1204 100 -> Plus
3L 4401900..4402156 1205..1461 100 -> Plus
3L 4402225..4402643 1462..1880 100 -> Plus

LD16414.pep Sequence

Translation from 473 to 2011

> LD16414.pep
MPEMIYSSSFLLLCCTILLLGTVQNAGSNSTSPHPHQNQTHRGHGHSHRT
RHQGNYLATHQRQQRRLQSLNQAKSDVELLPGVTMHEVTRLRRVQPHNPY
NKVQTRRLHQSRNPTEWDYNTYNIMTNTFGPPPPPMPLSPRYGKGEDNTQ
DVEFIGVRERGRGYSFVPSVTVTTAPPPNLNRRSASPGSRSSIGTIPPLV
PARRGYSYTTTTSSPPVNTITTDNPFETNTIGRGYPTDPKEMERRHICMQ
QRTVTMPVKRTEVYSRPTWKHVATPCQPPTFSGQKCTRVQVVHEQAYRDV
IDHKTAQQMTYDCCTGWSRENPRSDSCMKPICSARCQNGGNCTAPSTCSC
PTGFTGRFCEQDVDECQTEKPCDQQCINTHGSYFCRCRQGFVLQSDQQSC
KKVSTNADDAFEARDLENDIDDTDAEVATRLQKIEKSLANERVHTNELQK
SLQATYSVVDTLKSRLSTLEKQAQDVSRLQTNLYKTESRTNKLEGMLNLL
LKCRNGPNANCP*

LD16414.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25068-PA 513 GF25068-PA 1..513 1..512 2159 81.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15224-PA 517 GG15224-PA 1..517 1..512 2340 91.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15678-PA 506 GH15678-PA 44..506 60..512 1735 74.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
slow-PB 512 CG7447-PB 1..512 1..512 2784 100 Plus
slow-PA 512 CG7447-PA 1..512 1..512 2784 100 Plus
N-PB 2703 CG3936-PB 157..247 304..391 191 42.7 Plus
N-PA 2703 CG3936-PA 157..247 304..391 191 42.7 Plus
N-PB 2703 CG3936-PB 812..987 273..422 180 29 Plus
N-PA 2703 CG3936-PA 812..987 273..422 180 29 Plus
N-PB 2703 CG3936-PB 258..380 275..404 175 34.8 Plus
N-PA 2703 CG3936-PA 258..380 275..404 175 34.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12723-PA 497 GI12723-PA 25..497 37..512 1712 72 Plus
Dmoj\GI21507-PA 1968 GI21507-PA 1354..1467 311..416 154 37.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17893-PA 370 GL17893-PA 53..370 199..512 1295 77.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20359-PA 531 GA20359-PA 9..531 8..512 2036 77.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14656-PA 513 GM14656-PA 1..513 4..512 2682 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13841-PA 516 GD13841-PA 1..516 1..512 2713 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12711-PA 504 GJ12711-PA 31..504 59..512 1680 72.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11704-PA 520 GK11704-PA 75..520 73..512 1737 76.8 Plus
Dwil\GK17279-PA 2690 GK17279-PA 99..271 276..422 156 30.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21444-PA 519 GE21444-PA 1..519 1..512 2408 92.3 Plus

LD16414.hyp Sequence

Translation from 473 to 2011

> LD16414.hyp
MPEMIYSSSFLLLCCTILLLGTVQNAGSNSTSPHPHQNQTHRGHGHSHRT
RHQGNYLATHQRQQRRLQSLNQAKSDVELLPGVTMHEVTRLRRVQPHNPY
NKVQTRRLHQSRNPTEWDYNTYNIMTNTFGPPPPPMPLSPRYGKGEDNTQ
DVEFIGVRERGRGYSFVPSVTVTTAPPPNLNRRSASPGSRSSIGTIPPLV
PARRGYSYTTTTSSPPVNTITTDNPFETNTIGRGYPTDPKEMERRHICMQ
QRTVTMPVKRTEVYSRPTWKHVATPCQPPTFSGQKCTRVQVVHEQAYRDV
IDHKTAQQMTYDCCTGWSRENPRSDSCMKPICSARCQNGGNCTAPSTCSC
PTGFTGRFCEQDVDECQTEKPCDQQCINTHGSYFCRCRQGFVLQSDQQSC
KKVSTNADDAFEARDLENDIDDTDAEVATRLQKIEKSLANERVHTNELQK
SLQATYSVVDTLKSRLSTLEKQAQDVSRLQTNLYKTESRTNKLEGMLNLL
LKCRNGPNANCP*

LD16414.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
slow-PB 512 CG7447-PB 1..512 1..512 2784 100 Plus
slow-PA 512 CG7447-PA 1..512 1..512 2784 100 Plus
N-PB 2703 CG3936-PB 157..247 304..391 191 42.7 Plus
N-PA 2703 CG3936-PA 157..247 304..391 191 42.7 Plus
N-PB 2703 CG3936-PB 812..987 273..422 180 29 Plus
N-PA 2703 CG3936-PA 812..987 273..422 180 29 Plus
N-PB 2703 CG3936-PB 258..380 275..404 175 34.8 Plus
N-PA 2703 CG3936-PA 258..380 275..404 175 34.8 Plus