Clone LD16427 Report

Search the DGRC for LD16427

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:164
Well:27
Vector:pBS SK-
Associated Gene/TranscriptCG11760-RA
Protein status:LD16427.pep: validated full length
Preliminary Size:1873
Sequenced Size:1698

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11760 2001-01-01 Release 2 assignment
CG11760 2002-06-06 Blastp of sequenced clone
CG11760 2008-04-29 Release 5.5 accounting
CG11760 2008-08-15 Release 5.9 accounting
CG11760 2008-12-18 5.12 accounting

Clone Sequence Records

LD16427.complete Sequence

1698 bp (1698 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119591

> LD16427.complete
CTCAAAACTAAGCCACTTAAATGCACACTAAGCCACCGCACATAAAAACA
AAACAAAAAATCTAGATCCTACTAGACCTCCTAGGAATCCGTGCCAAGAC
AACCCGATAACATACCCAATGGCTGGCAGTTGAGGAGGACTTTCAACAAG
GCTGGTCGGCCATACTGTCGGTCTTCATGACCGCCCCCTGCTTTGTGGGC
GTCTCCTATCTACTGCTGCTCCAGACCTACCGACTGCGCCTGGAGTACTG
CCTGTGCACGCTGCAGATCGCCCTTTACCTGACCGAGGTGTGGTATGCCA
TCGTCTTCGTTTTCTCGCTGTGTCGTCCAGTAACTTATGATTAGCCATAT
AGACAGAAACATCCAACAGCCAACTAGCAGCAAATATACATGCGAAAGTT
TAGCAATCTATAAGATCGAAAAAGGATAATATGCGGTGTAAGGAAATTTA
ATGAATTTGAAAAGCAGTAGGCAGCTGAATTGCTCATGGCCGTGGAGAAG
AGAAACCAAACAGAAAGAAAAAAAAAACAAAACAAAACACATATGTAGCA
TATTAATAATTATGTATAGTAAGGTTTATGATAACATACACACACTCTTA
TATACATATATTTAACGGTTTTATATACAAAAATTGTTAACATTTAAGCA
TCAATTGGAACCAATATAAGACAACAAGCAAAACCTAAAACTTGAATAAT
TTTCACAATTTTAAGATGAAAATTTTTTTGTAAAAAGAAAAATATCGAAA
AACAGCCGAAAAACAAATTTGATGTGTGGAAATAATAATTTATAATAGTT
CACAGATAGCTCGAATCTTAAAAAGAATTGTAAAAAAATCAGTGGAATGT
CTCACAAAATCTAGTCAGCATCAAAATCATGAAAAACAAATGGCCGAAAG
GCCATTAAAAAAATTCATTACCACTAAGAGTCAGCGTTTAGTAGTTCATA
CCAATATTCAAAAGGCGGAGAACAACATAATTAAGCCCAGTTAAAAGTCT
AGACCATGTGTGTACTTTAATGAAACTACTTTATATAAACCTAGCAAATA
GCGTAAATAACATTTTCAAGACGTCACTAAAAACAATGCAAACCCGAGCG
GGCAACCGTTTACTAGAAAGCGAACAACAAATTAGCTAAATCATATAAAA
CATTTATAGAGTGTTAAAAACTAGGCGAAAACCCTCCATTACACTTCTCC
CCAATTCAGCCTATTGGCAACTCGAAACGCCCTTTAAATCACGCTCAATT
ATCCCCGCCTGATAGGATCCGAGGATTGCAGCTCCTCCAATGCTAGTCAC
TAATGTTCACAAACATTTTCTAAGCTAGACCGAAGATTGTGTAATAATTT
GATAAGACCTTTGTGTGGTTTCATAGCAAAATAACGCACAAATCGATAAC
AAAAACTCTCAACAGTCCACAAATCTCATGCTTTTAAAACAAAAGAAATA
ATTTTACTGAAACCAAACAGCTGGAAGCTAGAAGCTGAAAGAAAACCAAA
GCCACATCCTACGTTGAATAATTTACCTGTATAATATTTATGTCATTTCG
TTAAACGCAAAATGTTAACATACTTTTAAAGCGCGTGTAAAACGGATAGT
TAATAAAATAACGACAACAATATTTAAAAGAACATATACACTCGATGAAA
ATGAATATTAAAGATCGAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAA

LD16427.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8116-RB 2829 CG8116-RB 1155..2829 1..1675 8375 100 Plus
CG8116-RC 1835 CG8116-RC 1150..1835 1..686 3430 100 Plus
CG8116-RA 1840 CG8116-RA 1155..1840 1..686 3430 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4545774..4547299 149..1674 7490 99.7 Plus
chr3R 27901430 chr3R 4544192..4544342 1..151 755 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:04:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8719802..8721333 149..1680 7660 100 Plus
3R 32079331 3R 8718222..8718372 1..151 755 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8460633..8462164 149..1680 7660 100 Plus
3R 31820162 3R 8459053..8459203 1..151 755 100 Plus
Blast to na_te.dros performed 2019-03-16 00:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Kepler 722 Dbuz\Kepler KEPLER 722bp 411..460 586..634 112 72 Plus

LD16427.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:35:00 Download gff for LD16427.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4544192..4544341 1..150 100 -> Plus
chr3R 4545776..4547299 151..1675 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:51:24 Download gff for LD16427.complete
Subject Subject Range Query Range Percent Splice Strand
CG11760-RB 255..450 149..344 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:30:54 Download gff for LD16427.complete
Subject Subject Range Query Range Percent Splice Strand
CG11760-RB 255..450 149..344 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:56:55 Download gff for LD16427.complete
Subject Subject Range Query Range Percent Splice Strand
CG11760-RB 255..450 149..344 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:21:01 Download gff for LD16427.complete
Subject Subject Range Query Range Percent Splice Strand
CG11760-RB 255..450 149..344 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:04:59 Download gff for LD16427.complete
Subject Subject Range Query Range Percent Splice Strand
CG11760-RB 255..450 149..344 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:00:46 Download gff for LD16427.complete
Subject Subject Range Query Range Percent Splice Strand
CG11760-RA 1..1675 1..1675 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:30:54 Download gff for LD16427.complete
Subject Subject Range Query Range Percent Splice Strand
CG8116-RB 1155..2829 1..1675 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:56:55 Download gff for LD16427.complete
Subject Subject Range Query Range Percent Splice Strand
CG8116-RB 1146..2812 1..1667 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:21:01 Download gff for LD16427.complete
Subject Subject Range Query Range Percent Splice Strand
CG11760-RA 1..1675 1..1675 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:04:59 Download gff for LD16427.complete
Subject Subject Range Query Range Percent Splice Strand
CG8116-RB 1146..2812 1..1667 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:35:00 Download gff for LD16427.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8718222..8718371 1..150 100 -> Plus
3R 8719804..8721328 151..1675 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:35:00 Download gff for LD16427.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8718222..8718371 1..150 100 -> Plus
3R 8719804..8721328 151..1675 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:35:00 Download gff for LD16427.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8718222..8718371 1..150 100 -> Plus
3R 8719804..8721328 151..1675 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:56:55 Download gff for LD16427.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4543944..4544093 1..150 100 -> Plus
arm_3R 4545526..4547050 151..1675 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:54:47 Download gff for LD16427.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8460635..8462159 151..1675 100   Plus
3R 8459053..8459202 1..150 100 -> Plus

LD16427.pep Sequence

Translation from 176 to 343

> LD16427.pep
MTAPCFVGVSYLLLLQTYRLRLEYCLCTLQIALYLTEVWYAIVFVFSLCR
PVTYD*

LD16427.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18183-PA 149 GF18183-PA 95..149 1..55 274 96.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12372-PA 149 GG12372-PA 95..149 1..55 280 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18573-PA 149 GH18573-PA 95..149 1..55 260 94.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11760-PB 149 CG11760-PB 95..149 1..55 294 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22391-PA 149 GI22391-PA 95..149 1..55 270 94.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12473-PA 149 GL12473-PA 95..149 1..55 274 96.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27519-PA 149 GA27519-PA 95..149 1..55 274 96.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23755-PA 149 GM23755-PA 95..149 1..55 280 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18566-PA 149 GD18566-PA 95..149 1..55 280 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22676-PA 149 GJ22676-PA 95..149 1..55 273 94.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11811-PA 149 GK11811-PA 95..149 1..55 273 96.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25898-PA 149 GE25898-PA 95..149 1..55 280 100 Plus

LD16427.hyp Sequence

Translation from 176 to 343

> LD16427.hyp
MTAPCFVGVSYLLLLQTYRLRLEYCLCTLQIALYLTEVWYAIVFVFSLCR
PVTYD*

LD16427.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11760-PB 149 CG11760-PB 95..149 1..55 294 100 Plus