Clone LD16783 Report

Search the DGRC for LD16783

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:167
Well:83
Vector:pBS SK-
Associated Gene/TranscriptCG3038-RA
Protein status:LD16783.pep: gold
Preliminary Size:1877
Sequenced Size:1697

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3038 2001-01-01 Release 2 assignment
CG3038 2001-10-10 Blastp of sequenced clone
CG3038 2003-01-01 Sim4 clustering to Release 3
CG3038 2008-04-29 Release 5.5 accounting
CG3038 2008-08-15 Release 5.9 accounting
CG3038 2008-12-18 5.12 accounting

Clone Sequence Records

LD16783.complete Sequence

1697 bp (1697 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061226

> LD16783.complete
CGCATCTCAATTTATTTTTTTCTTAATATATAATCGTTTTAGGCATTGTG
TTTATTAAAGTTTAGCAAGATAGACCAAGCCACATATACTTACAGACGGC
ATAGTGCGAGGGGAATCCCACGTAGAATGTAAGAAAAATGCGCATGCGCG
GACGAAGATTGCTTCCGATTATTTTGTCGCTTCTTTTGATCGTCCTACTG
AGTCTCTGTTACTTTTCGAATCACTTGAGGGATTCAAGCCAGTCCCGCAA
AAACGGTTTCTTGCTGCACTTACCACTCGAAACGAAGAGGAATCCATCTA
ACCCTAATACTCCGTTAAGTAATCTTCTGAATCTCACGGACTTCCACTAC
TTGCTGGCCAGTAATGTGTGTCGAAAGGCAAAAAGAGAACTCTTAGCCGT
TTTAATAGTTACTTCGTATGCCGGACACGATGCCTTGCGATCAGCTCACC
GACAGGCAATTCCCCAAAGCAAACTGGAAGAAATGGGCCTGCGAAGAGTT
TTTCTCTTGGCAGCCCTGCCTTCAAGAGAGCATTTTATAAGCCAGGATCA
ACTGGCCAGCGAACAGAATCGTTTCGGGGACCTTCTCCAGGGGAATTTCA
TCGAGGACTATCGCAATCTGAGCTACAAACACGTAATGGGATTAAAGTGG
GTCTCTGAGGAGTGCAAAAAGCAGGCCAAGTTTATCATTAAACTGGATGA
TGACATCATTTACGATGTGTTTCATCTGCGCAGGTATTTAGAGACCCTCG
AGGTGCGCGAACCTGGACTGGCCACATCAAGTACTTTGTTATCTGGCTAC
GTACTGGATGCCAAGCCCCCCATTCGCCTTCGAGCCAATAAGTGGTACGT
TAGCAAAAAGGAGTATCCTCAGGCTTTATATCCCGCCTATTTGTCGGGCT
GGCTTTACGTGACCAACGTGCCAACAGCCGAGAGGATTGTGGCGGAGGCG
GAGAGGATGTCATTTTTTTGGATCGATGACACCTGGTTGACTGGAGTAGT
AAGGACTCGTTTGGGTATTCCCCTTGAGCGTCACAACGACTGGTTTTCTG
CCAATGCAGAGTTCATCGACTGCTGTGTGCGAGATCTCAAGAAGCACAAC
TATGAGTGCGAGTACTCCGTGGGACCCAATGGCGGTGACGACCGACTACT
GGTGGAATTTCTGCATAACGTTGAGAAGTGCTACTTTGATGAATGCGTCA
AACGGCCGGTTGGTAAGTCGCTCAAAGAGACCTGTTTAGCGGCGGCCAAA
TCTCGACCCCCTAAACATGGTTTTCCTGAAATAAAAGCGTTGCGACTCAG
GTGACATCGGTTCAAGGACAAATGGCTTTTCATCCTTTAGCAACTATCAT
GTAAGGACTTTTTAAAAGGGGGTGATGAAGGAAGAGACAAATATTGGAAA
AGGGATATGATACTCATCCTTGCATATATATATATATGCATTACAATAAA
TGTTTGCCAGAAATCGACTTTACATGAATTACTATACACCAGTTTTTTAA
TTATATATAATTTCGGTTGCCATAGTAACAGTCGGAAAATTAAATGAAAA
ATAATAGGACATGAAAACATACTTTCATTGTTTTTTTTTTTAATCATCAA
TTTTAAAAATAAAACTGTTCTAATGTGTTTTTTGTTTTACACTGCATTTT
TACGAAATAAATAATAATAATAAGATAAAAAAAAAAAAAAAAAAAAA

LD16783.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3038-RA 1889 CG3038-RA 101..1781 1..1682 8355 99.8 Plus
CG3038-RB 1754 CG3038-RB 195..1646 230..1682 7210 99.8 Plus
CG3038.b 1743 CG3038.b 688..1635 734..1682 4690 99.7 Plus
CG3038.b 1743 CG3038.b 42..689 1..648 3240 100 Plus
CG3038-RB 1754 CG3038-RB 67..195 1..129 645 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 138096..139378 1676..393 6355 99.8 Minus
chrX 22417052 chrX 139440..139835 396..1 1980 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:04:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 244062..245350 1682..393 6385 99.8 Minus
X 23542271 X 245412..245807 396..1 1980 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 252160..253448 1682..393 6395 99.8 Minus
X 23527363 X 253510..253905 396..1 1980 100 Minus
Blast to na_te.dros performed 2019-03-16 16:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 7113..7219 1401..1505 125 60.2 Plus
Tabor 7345 Tabor TABOR 7345bp 2847..2905 1640..1581 117 68.3 Minus

LD16783.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:34:22 Download gff for LD16783.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 138096..139374 397..1676 99 <- Minus
chrX 139440..139835 1..396 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:51:40 Download gff for LD16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 1..1167 138..1304 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:46:03 Download gff for LD16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 1..1167 138..1304 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:17:47 Download gff for LD16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 1..1167 138..1304 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:50 Download gff for LD16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 1..1167 138..1304 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:33:31 Download gff for LD16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 1..1167 138..1304 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:29:26 Download gff for LD16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 27..1701 1..1676 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:46:03 Download gff for LD16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 27..1701 1..1676 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:17:47 Download gff for LD16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 50..1724 1..1676 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:50 Download gff for LD16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 27..1701 1..1676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:33:31 Download gff for LD16783.complete
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 50..1724 1..1676 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:34:22 Download gff for LD16783.complete
Subject Subject Range Query Range Percent Splice Strand
X 244068..245346 397..1676 99 <- Minus
X 245412..245807 1..396 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:34:22 Download gff for LD16783.complete
Subject Subject Range Query Range Percent Splice Strand
X 244068..245346 397..1676 99 <- Minus
X 245412..245807 1..396 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:34:22 Download gff for LD16783.complete
Subject Subject Range Query Range Percent Splice Strand
X 244068..245346 397..1676 99 <- Minus
X 245412..245807 1..396 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:17:47 Download gff for LD16783.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 138101..139379 397..1676 99 <- Minus
arm_X 139445..139840 1..396 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:51:36 Download gff for LD16783.complete
Subject Subject Range Query Range Percent Splice Strand
X 252166..253444 397..1676 99 <- Minus
X 253510..253905 1..396 100   Minus

LD16783.hyp Sequence

Translation from 137 to 1303

> LD16783.hyp
MRMRGRRLLPIILSLLLIVLLSLCYFSNHLRDSSQSRKNGFLLHLPLETK
RNPSNPNTPLSNLLNLTDFHYLLASNVCRKAKRELLAVLIVTSYAGHDAL
RSAHRQAIPQSKLEEMGLRRVFLLAALPSREHFISQDQLASEQNRFGDLL
QGNFIEDYRNLSYKHVMGLKWVSEECKKQAKFIIKLDDDIIYDVFHLRRY
LETLEVREPGLATSSTLLSGYVLDAKPPIRLRANKWYVSKKEYPQALYPA
YLSGWLYVTNVPTAERIVAEAERMSFFWIDDTWLTGVVRTRLGIPLERHN
DWFSANAEFIDCCVRDLKKHNYECEYSVGPNGGDDRLLVEFLHNVEKCYF
DECVKRPVGKSLKETCLAAAKSRPPKHGFPEIKALRLR*

LD16783.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3038-PA 388 CG3038-PA 1..388 1..388 2040 100 Plus
CG3038-PB 358 CG3038-PB 2..358 32..388 1888 100 Plus
CG3038-PC 359 CG3038-PC 1..359 1..388 1844 92.5 Plus
CG11357-PD 434 CG11357-PD 99..341 46..293 319 30.3 Plus
CG11357-PC 434 CG11357-PC 99..341 46..293 319 30.3 Plus

LD16783.pep Sequence

Translation from 137 to 1303

> LD16783.pep
MRMRGRRLLPIILSLLLIVLLSLCYFSNHLRDSSQSRKNGFLLHLPLETK
RNPSNPNTPLSNLLNLTDFHYLLASNVCRKAKRELLAVLIVTSYAGHDAL
RSAHRQAIPQSKLEEMGLRRVFLLAALPSREHFISQDQLASEQNRFGDLL
QGNFIEDYRNLSYKHVMGLKWVSEECKKQAKFIIKLDDDIIYDVFHLRRY
LETLEVREPGLATSSTLLSGYVLDAKPPIRLRANKWYVSKKEYPQALYPA
YLSGWLYVTNVPTAERIVAEAERMSFFWIDDTWLTGVVRTRLGIPLERHN
DWFSANAEFIDCCVRDLKKHNYECEYSVGPNGGDDRLLVEFLHNVEKCYF
DECVKRPVGKSLKETCLAAAKSRPPKHGFPEIKALRLR*

LD16783.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22180-PA 391 GF22180-PA 1..391 1..388 1637 78.9 Plus
Dana\GF25081-PA 444 GF25081-PA 108..355 46..298 314 30.3 Plus
Dana\GF20020-PA 332 GF20020-PA 49..280 63..296 313 32.8 Plus
Dana\GF20798-PA 325 GF20798-PA 39..278 58..296 311 32.5 Plus
Dana\GF20775-PA 321 GF20775-PA 18..280 17..302 242 27.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12769-PA 389 GG12769-PA 1..389 1..388 1825 92.3 Plus
Dere\GG15238-PA 430 GG15238-PA 100..337 51..293 316 30.9 Plus
Dere\GG10515-PA 585 GG10515-PA 329..558 74..316 242 25.4 Plus
Dere\GG18691-PA 327 GG18691-PA 59..286 66..302 227 27.8 Plus
Dere\GG10514-PA 399 GG10514-PA 140..369 76..315 212 26.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24694-PA 390 GH24694-PA 1..390 1..388 1505 71.6 Plus
Dgri\GH15689-PA 453 GH15689-PA 121..369 53..288 292 31.5 Plus
Dgri\GH24143-PA 326 GH24143-PA 14..281 13..298 249 26.5 Plus
Dgri\GH11617-PA 614 GH11617-PA 372..587 88..316 245 25.7 Plus
Dgri\GH20401-PA 462 GH20401-PA 198..406 116..304 230 27.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3038-PA 388 CG3038-PA 1..388 1..388 2040 100 Plus
CG3038-PB 358 CG3038-PB 2..358 32..388 1888 100 Plus
CG3038-PC 359 CG3038-PC 1..359 1..388 1844 92.5 Plus
CG11357-PD 434 CG11357-PD 99..341 46..293 319 30.3 Plus
CG11357-PC 434 CG11357-PC 99..341 46..293 319 30.3 Plus
CG11357-PB 434 CG11357-PB 99..341 46..293 319 30.3 Plus
CG11357-PA 434 CG11357-PA 99..341 46..293 319 30.3 Plus
brn-PA 325 CG4934-PA 9..284 8..302 246 26.3 Plus
CG8668-PB 585 CG8668-PB 329..558 74..316 239 25.4 Plus
CG8668-PA 585 CG8668-PA 329..558 74..316 239 25.4 Plus
CG30036-PA 388 CG30036-PA 147..332 137..304 211 29.9 Plus
CG8673-PA 420 CG8673-PA 164..390 77..316 210 24.2 Plus
GalT1-PB 466 CG33145-PB 230..406 142..299 205 26.6 Plus
CG30037-PA 420 CG30037-PA 126..358 97..299 193 25.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21823-PA 395 GI21823-PA 1..395 1..388 1462 69.5 Plus
Dmoj\GI12738-PA 449 GI12738-PA 96..376 49..291 291 30.2 Plus
Dmoj\GI23623-PA 347 GI23623-PA 59..292 62..296 287 31.7 Plus
Dmoj\GI17920-PA 607 GI17920-PA 362..580 88..316 249 27.8 Plus
Dmoj\GI19588-PA 452 GI19588-PA 190..396 118..304 229 27.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13354-PA 389 GL13354-PA 1..389 1..388 1518 74.5 Plus
Dper\GL17908-PA 437 GL17908-PA 89..348 28..288 343 35.2 Plus
Dper\GL14116-PA 335 GL14116-PA 10..284 17..296 282 31.4 Plus
Dper\GL24762-PA 596 GL24762-PA 340..569 74..316 226 24.6 Plus
Dper\GL21389-PA 318 GL21389-PA 87..277 105..303 221 29.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15802-PA 389 GA15802-PA 1..389 1..388 1512 74.2 Plus
Dpse\GA10945-PA 433 GA10945-PA 85..344 28..288 353 35.2 Plus
Dpse\GA27742-PA 335 GA27742-PA 8..284 15..296 280 30.1 Plus
Dpse\GA21248-PA 598 GA21248-PA 342..571 74..316 227 24.6 Plus
Dpse\GA18536-PA 318 GA18536-PA 87..277 105..303 221 29.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19049-PA 364 GM19049-PA 1..359 1..358 1820 95.8 Plus
Dsec\GM14670-PA 433 GM14670-PA 97..340 46..293 315 30.3 Plus
Dsec\GM16754-PA 587 GM16754-PA 331..560 74..316 243 25.4 Plus
Dsec\GM12324-PA 325 GM12324-PA 40..284 43..302 225 26.1 Plus
Dsec\GM16743-PA 414 GM16743-PA 158..384 77..316 209 24.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16488-PA 361 GD16488-PA 1..361 1..360 1833 95.8 Plus
Dsim\GD13851-PA 433 GD13851-PA 97..340 46..293 318 30.3 Plus
Dsim\GD23505-PA 587 GD23505-PA 331..560 74..316 241 25.4 Plus
Dsim\GD16669-PA 325 GD16669-PA 40..284 43..302 221 26 Plus
Dsim\GD25871-PA 466 GD25871-PA 230..406 142..299 208 27.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16997-PA 404 GJ16997-PA 1..404 1..388 1501 69 Plus
Dvir\GJ20815-PA 339 GJ20815-PA 57..288 62..296 276 33.6 Plus
Dvir\GJ15510-PA 472 GJ15510-PA 169..398 61..288 270 31.5 Plus
Dvir\GJ17692-PA 621 GJ17692-PA 376..594 88..316 267 29.1 Plus
Dvir\GJ18347-PA 476 GJ18347-PA 214..416 118..299 229 27.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10121-PA 394 GK10121-PA 1..394 1..388 1494 73.9 Plus
Dwil\GK16591-PA 453 GK16591-PA 122..385 46..288 320 32.3 Plus
Dwil\GK15559-PA 329 GK15559-PA 9..288 8..303 240 26.3 Plus
Dwil\GK24845-PA 594 GK24845-PA 341..567 77..316 231 24.5 Plus
Dwil\GK22248-PA 463 GK22248-PA 205..403 120..299 223 25.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16596-PA 389 GE16596-PA 1..389 1..388 1827 93.1 Plus
Dyak\GE21457-PA 435 GE21457-PA 105..342 51..293 311 31.3 Plus
Dyak\GE18735-PA 586 GE18735-PA 330..559 74..316 240 25.4 Plus
Dyak\GE16330-PA 327 GE16330-PA 83..286 88..302 229 28.1 Plus
Dyak\GE18734-PA 416 GE18734-PA 172..386 88..315 215 25.8 Plus