BDGP Sequence Production Resources |
Search the DGRC for LD16810
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 168 |
Well: | 10 |
Vector: | pBS SK- |
Associated Gene/Transcript | pim-RA |
Protein status: | LD16810.pep: gold |
Preliminary Size: | 1089 |
Sequenced Size: | 900 |
Gene | Date | Evidence |
---|---|---|
CG5052 | 2001-01-01 | Release 2 assignment |
CG5052 | 2001-10-10 | Blastp of sequenced clone |
CG5052 | 2003-01-01 | Sim4 clustering to Release 3 |
pim | 2008-04-29 | Release 5.5 accounting |
pim | 2008-08-15 | Release 5.9 accounting |
pim | 2008-12-18 | 5.12 accounting |
900 bp (900 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061227
> LD16810.complete CGCAGCTCACTGCTAGAATTCAATCAAAATACCTTTTTAACACCAATAAA TGCTAACAAAATGGATCAGATTTTAAACAAGGAAAACACCGGCATTAATT TGCCAGCGAATCCCATTAAAAATGGAGTTCCTACAAATTCCGTATTGAAG AAACCTCTTGGTAACCTTGACAATGTGATGCACCAAACTCCTGGAATAAC CCCGTTCAAAAGCACTTCTCTGAAACTCGAGGGTAGTATTGCCAAGCTTT CGCTGCGAAAGGCCCCCAAACAAAATGTGGTCAGCAGGGATCGCGAGGAA GTTAGGTATAAAACAAATAGCTGCTTTTTGGGCGCCTACGTATTGAATTG CGAATACAGAGTCGTCAATTTGTTCAACTACACTGACTTTCCGAACGAGA AATGTTTGAAGAACTGCAGCAAGCCGGTCACAGAGACCTGGTCGGAAAAT CAAGAGGGCTATGAAGGACTATTGGATCAACTTTATCTTGATCTGCGCAC ATTGGAAAATAATTTGGAAAACAGATGCCTTCCGCCCCTAGATTTTACTG ACCTGCCATACATATACAACACAGAAAACATGGAGCCTGCAGAGCCTGAA TACTTATTAAATTTATATCCCCCATTGCCTAACTTGGAAGGCATTGATGT TCTATTTTAGATCCTTGTTTAAAAGTTCTATGATTAATTGTAGTTTAATA TTTTTTAGCTAGGTATCTTTGTACTACTAATTAATTATTTATTAATGTTA TGCTAAGAGAAACTGTTATACCATTAGCTATCCAAGTTTGTTGTCTCGAA TCACATTTGTGAAAAATATTTTTTTTACGCTACAATATATTTAGTAGTTT AAGAACCGACATTAAGCCTCCAACAGGCAATTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 10362452..10362909 | 425..882 | 2290 | 100 | Plus |
chr2L | 23010047 | chr2L | 10362065..10362388 | 101..424 | 1620 | 100 | Plus |
chr2L | 23010047 | chr2L | 10361902..10362001 | 1..100 | 500 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10363589..10364047 | 425..883 | 2295 | 100 | Plus |
2L | 23513712 | 2L | 10363202..10363525 | 101..424 | 1620 | 100 | Plus |
2L | 23513712 | 2L | 10363039..10363138 | 1..100 | 500 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10363589..10364047 | 425..883 | 2295 | 100 | Plus |
2L | 23513712 | 2L | 10363202..10363525 | 101..424 | 1620 | 100 | Plus |
2L | 23513712 | 2L | 10363039..10363138 | 1..100 | 500 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
NOF | 4347 | NOF FB 4347bp Derived from X51937 (g8297) (Rel. 44, Last updated, Version 6). | 3870..3928 | 643..702 | 153 | 75 | Plus |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 658..738 | 758..841 | 117 | 64 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 10362065..10362388 | 101..424 | 100 | -> | Plus |
chr2L | 10361902..10362001 | 1..100 | 100 | -> | Plus |
chr2L | 10362452..10362909 | 425..882 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pim-RA | 1..600 | 61..660 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pim-RA | 1..600 | 61..660 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pim-RA | 1..600 | 61..660 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pim-RA | 1..600 | 61..660 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pim-RA | 1..600 | 61..660 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pim-RA | 63..944 | 1..882 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pim-RA | 51..932 | 1..882 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pim-RA | 51..932 | 1..882 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pim-RA | 63..944 | 1..882 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pim-RA | 51..932 | 1..882 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10363589..10364046 | 425..882 | 100 | Plus | |
2L | 10363039..10363138 | 1..100 | 100 | -> | Plus |
2L | 10363202..10363525 | 101..424 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10363589..10364046 | 425..882 | 100 | Plus | |
2L | 10363039..10363138 | 1..100 | 100 | -> | Plus |
2L | 10363202..10363525 | 101..424 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10363589..10364046 | 425..882 | 100 | Plus | |
2L | 10363039..10363138 | 1..100 | 100 | -> | Plus |
2L | 10363202..10363525 | 101..424 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 10363039..10363138 | 1..100 | 100 | -> | Plus |
arm_2L | 10363202..10363525 | 101..424 | 100 | -> | Plus |
arm_2L | 10363589..10364046 | 425..882 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10363202..10363525 | 101..424 | 100 | -> | Plus |
2L | 10363589..10364046 | 425..882 | 100 | Plus | |
2L | 10363039..10363138 | 1..100 | 100 | -> | Plus |
Translation from 0 to 659
> LD16810.hyp RSSLLEFNQNTFLTPINANKMDQILNKENTGINLPANPIKNGVPTNSVLK KPLGNLDNVMHQTPGITPFKSTSLKLEGSIAKLSLRKAPKQNVVSRDREE VRYKTNSCFLGAYVLNCEYRVVNLFNYTDFPNEKCLKNCSKPVTETWSEN QEGYEGLLDQLYLDLRTLENNLENRCLPPLDFTDLPYIYNTENMEPAEPE YLLNLYPPLPNLEGIDVLF*
Translation from 60 to 659
> LD16810.pep MDQILNKENTGINLPANPIKNGVPTNSVLKKPLGNLDNVMHQTPGITPFK STSLKLEGSIAKLSLRKAPKQNVVSRDREEVRYKTNSCFLGAYVLNCEYR VVNLFNYTDFPNEKCLKNCSKPVTETWSENQEGYEGLLDQLYLDLRTLEN NLENRCLPPLDFTDLPYIYNTENMEPAEPEYLLNLYPPLPNLEGIDVLF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15772-PA | 205 | GF15772-PA | 1..205 | 1..199 | 514 | 51.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\pim-PA | 199 | GG10115-PA | 1..199 | 1..199 | 915 | 86.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pim-PB | 199 | CG5052-PB | 1..199 | 1..199 | 1064 | 100 | Plus |
pim-PA | 199 | CG5052-PA | 1..199 | 1..199 | 1064 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10136-PA | 222 | GI10136-PA | 1..172 | 1..149 | 158 | 31.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19150-PA | 192 | GL19150-PA | 2..192 | 16..199 | 210 | 33.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\pim-PA | 167 | GA18622-PA | 1..167 | 40..199 | 181 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18236-PA | 199 | GM18236-PA | 1..199 | 1..199 | 976 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23684-PA | 199 | GD23684-PA | 1..199 | 1..199 | 982 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23736-PA | 521 | GK23736-PA | 6..172 | 5..188 | 165 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\pim-PA | 199 | GE18929-PA | 1..199 | 1..199 | 913 | 86.4 | Plus |