Clone LD16826 Report

Search the DGRC for LD16826

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:168
Well:26
Vector:pBS SK-
Associated Gene/TranscriptCG8569-RA
Protein status:LD16826.pep: gold
Preliminary Size:2353
Sequenced Size:2369

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8569 2001-10-10 Blastp of sequenced clone
CG8569 2003-01-01 Sim4 clustering to Release 3
CG8569 2008-04-29 Release 5.5 accounting
CG8569 2008-08-15 Release 5.9 accounting
CG8569 2008-12-18 5.12 accounting

Clone Sequence Records

LD16826.complete Sequence

2369 bp (2369 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061228

> LD16826.complete
TTCACCCAATCCAGCAGTCCGGCAACGCTTCCAGTTAGCCAAAAATTGAT
TTCATTTGCAAGAAAACTTTAAAACGCAAATGAAATGGCCAGCGATATTC
CACCTTCAGCCATCCGTATTTGGATGGACAAGCTGAAAAAGGGCGTTGGG
CAGCCGGCGACAGTCCTAGAGCGTTCCCTGCTCAATTTAATGAGTGCAGA
AGCAGCCAGTTTATCGGTGAAAAATGCCACGGAGCGAGGCATACTGGTGG
CCAGAGCAGGCGGCGGACGGTCCAAGCGTCTGGCCCTCGCCTTTTGTCAA
AAAGTAAGCCGGCTGCCCAGCTCACCAATTGATCCGTTCTGCTTCGAGTG
CCATTTGCCCGGAGCCGTTAAGAAATGCATATCCTGCCATCGCTCCTTCC
ACGAGAATTGCCAGCGACAGGACCCGGAGAAGCCCAATTATTCAGTGCCC
TCGGACAAGGGCCAACCTTACCAGTTTCCCGTCAACGAATTGGACAATCA
GCCCCTGAATAACACTCAGAACTTGGAGACTCCCCAAACGCCAACGCCCC
TGCTCGATCATAATAGCAACATCAATCAGACTTTGCTAGCCACTACGGAT
TTCCTGAAGCACGAGAACATCGAGTGGGACGACGACGTCTTCTTTGTGTG
CGAACAAAAGGGCGCGCGCCAGCGAAAGCTGCCCAGGATCAAGGACGAAC
TACAAAGCAGTTTGGATAGCGATGAGGGAAGCGATCTGGAGCGCTGCACC
CACTGCCGTTTGCTCGCCCTGGCCGCTCTCCACAACCCACCGCAACTCGA
CAAGCAAGAGCTGGGCTGCCTATTGAAGTACTCCTGGGACCAGCATCACT
CCTGGATCTCCATGGATGTGGCCAAGTACATGGCCAAGCATTGGAACGAA
CGCGACAAGGCGCTGGTTAAGCGGCTACTCTTCAAGACAAAGATTTTGGG
TCTGGGCGACATCGAGCGCAACATAGCGGCGGCGAAGTATACGTACCTAA
CAGAATTCCTAATGGATCTGCTCGATCTGCAGCACAACATGGCCGTGTTC
TTTGGGCAAAAGAGCGTTGAGTACAATGCCACCAAGTGGCTGATGAGAGA
TGTGACGCACGACATTCGCGAAATCCGTCGTTGCCCCGACTGCTATAGGT
ATTCCAACGAGGCCAGCCTGTCGGATCTCTGGTTCGCCAAGCCATGTCTT
CAGCGGCACGAGTTGGTATTTGCCAAGCAGGTGGGCTCACCACCGTGGCC
TGCAAAGGTGATGAGCGTCTCCAAGCGTCAGCCCATCAAGTACGACGTCC
GCTTCTTCGGTGGCACTCATTCCCGGGCCCTCATCTCAGAACGTGATATT
ACACCCATCGAGTCGGACATTCAGTCGCATATCAAACCACGGAACTCCCG
AGCTCTGAGCGCTGCGATAAAAGAACTGCAGTGTCACATGATGTTGTCCC
ACTATTCCGCCTCGCTATTCGGCTTCCATGCAGATCCCACCGTTGCCGAG
AATCTCATTAAGGTGGCTCTATCCCACTGCACGGAGTCAACGGAAACGAG
TGCGTCCGGCAAACGAGGACGCCCGCCGACTCCAGCCACTCCCGGCGCTG
CAAAGAATCGACGGCTTAATAACACCACTTCGAATACCTCATCGCCGGTG
CCCATTCGTGGGATTCCTGACTCCGTAGCATATGATAGTCTAACCGCCGA
AATACTGCAGGCGCATAACGATCTGCTAAATTGCCGAAGAGAGCTCTCGG
CCACGCAAAGGAAGCTGGCCGAAGTGAAAAGGAAGCAATGGTGCTACCAT
TGCCTGGATGAGGCCGTTTTTAACTGCTGCTTTACTGCGTCCTACTGCAG
CGTTGAATGCCAGCGACGTGATAAGAGACGCCACCAAGCATCCTGCAAAG
TTACTCATTAAATTAGGACTACAGACGAAATTGGAAACTATGTCCAAAGT
GATAACATCTCGTTTGTTACCATCCTTTTGTATCAAATGTATCCGTTCTT
AAGATATGCATCAATATTTTCAGAAGATAAAGAATGTTAAACTTGTATTA
ATGAAAAATATTATCAATGAGATATTTGAAAATGGCGCCTTTTCCGTTCT
TATGATGGGCAGCACTGTTTCCGCTAGGTGTCGCCACCTGATCATATTAA
TCCATATTCATATTACGTTTATAAAAAATCAGAAAAAACGTACAATACTT
TAAAAGTGTGGGCGTGGAACTTACTTGTACTTGTTACTAACAATATAAAA
ACTTGTTTCCTACCAAAAAATATATACATATTTTATAAGAATGGGTATTA
TTTCGTGCCAGCTGTATTCATAATAATAAACACAAATTATTGTTCATCCA
CAAAAAAAAAAAAAAAAAA

LD16826.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8569-RA 2460 CG8569-RA 108..2460 1..2353 11765 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8407858..8408953 1256..2351 5450 99.8 Plus
chr2R 21145070 chr2R 8406739..8407801 197..1259 5255 99.6 Plus
chr2R 21145070 chr2R 8406478..8406676 1..199 995 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:04:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12520529..12521626 1256..2353 5490 100 Plus
2R 25286936 2R 12519410..12520472 197..1259 5315 100 Plus
2R 25286936 2R 12519149..12519347 1..199 995 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12521728..12522825 1256..2353 5490 100 Plus
2R 25260384 2R 12520609..12521671 197..1259 5315 100 Plus
2R 25260384 2R 12520348..12520546 1..199 995 100 Plus
Blast to na_te.dros performed 2019-03-16 13:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
INE-1 611 INE-1 INE1 611bp Derived from U66884 (e1371475) (Rel. 52, Last updated, Version 6). 247..436 2222..2027 120 57.4 Minus
gypsy2 6841 gypsy2 GYPSY2 6841bp 3719..3767 1500..1548 119 71.4 Plus

LD16826.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:06:11 Download gff for LD16826.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8406742..8407799 200..1257 99 -> Plus
chr2R 8406478..8406676 1..199 100 -> Plus
chr2R 8407860..8408953 1258..2351 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:51:42 Download gff for LD16826.complete
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 1..1827 85..1911 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:46:06 Download gff for LD16826.complete
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 1..1827 85..1911 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:25:01 Download gff for LD16826.complete
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 1..1827 85..1911 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:51 Download gff for LD16826.complete
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 1..1827 85..1911 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:13:40 Download gff for LD16826.complete
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 1..1827 85..1911 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:29:28 Download gff for LD16826.complete
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 1..2351 1..2351 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:46:06 Download gff for LD16826.complete
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 1..2351 1..2351 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:01 Download gff for LD16826.complete
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 1..2334 18..2351 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:51 Download gff for LD16826.complete
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 1..2351 1..2351 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:40 Download gff for LD16826.complete
Subject Subject Range Query Range Percent Splice Strand
CG8569-RA 1..2334 18..2351 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:06:11 Download gff for LD16826.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12519149..12519347 1..199 100 -> Plus
2R 12519413..12520470 200..1257 100 -> Plus
2R 12520531..12521624 1258..2351 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:06:11 Download gff for LD16826.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12519149..12519347 1..199 100 -> Plus
2R 12519413..12520470 200..1257 100 -> Plus
2R 12520531..12521624 1258..2351 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:06:11 Download gff for LD16826.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12519149..12519347 1..199 100 -> Plus
2R 12519413..12520470 200..1257 100 -> Plus
2R 12520531..12521624 1258..2351 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:01 Download gff for LD16826.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8406654..8406852 1..199 100 -> Plus
arm_2R 8406918..8407975 200..1257 100 -> Plus
arm_2R 8408036..8409129 1258..2351 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:51:39 Download gff for LD16826.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12520612..12521669 200..1257 100 -> Plus
2R 12521730..12522823 1258..2351 100   Plus
2R 12520348..12520546 1..199 100 -> Plus

LD16826.pep Sequence

Translation from 84 to 1910

> LD16826.pep
MASDIPPSAIRIWMDKLKKGVGQPATVLERSLLNLMSAEAASLSVKNATE
RGILVARAGGGRSKRLALAFCQKVSRLPSSPIDPFCFECHLPGAVKKCIS
CHRSFHENCQRQDPEKPNYSVPSDKGQPYQFPVNELDNQPLNNTQNLETP
QTPTPLLDHNSNINQTLLATTDFLKHENIEWDDDVFFVCEQKGARQRKLP
RIKDELQSSLDSDEGSDLERCTHCRLLALAALHNPPQLDKQELGCLLKYS
WDQHHSWISMDVAKYMAKHWNERDKALVKRLLFKTKILGLGDIERNIAAA
KYTYLTEFLMDLLDLQHNMAVFFGQKSVEYNATKWLMRDVTHDIREIRRC
PDCYRYSNEASLSDLWFAKPCLQRHELVFAKQVGSPPWPAKVMSVSKRQP
IKYDVRFFGGTHSRALISERDITPIESDIQSHIKPRNSRALSAAIKELQC
HMMLSHYSASLFGFHADPTVAENLIKVALSHCTESTETSASGKRGRPPTP
ATPGAAKNRRLNNTTSNTSSPVPIRGIPDSVAYDSLTAEILQAHNDLLNC
RRELSATQRKLAEVKRKQWCYHCLDEAVFNCCFTASYCSVECQRRDKRRH
QASCKVTH*

LD16826.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13391-PA 621 GF13391-PA 1..619 1..606 2255 67 Plus
Dana\GF22978-PA 1684 GF22978-PA 437..616 275..468 191 30.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20313-PA 606 GG20313-PA 1..606 1..608 2953 89.5 Plus
Dere\GG11823-PA 1667 GG11823-PA 456..606 297..452 190 31.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22740-PA 654 GH22740-PA 1..648 1..604 1192 42.1 Plus
Dgri\GH18646-PA 1867 GH18646-PA 489..643 307..468 177 31.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8569-PA 608 CG8569-PA 1..608 1..608 3243 100 Plus
CG1815-PB 1121 CG1815-PB 459..618 302..468 192 31 Plus
CG1815-PC 1664 CG1815-PC 459..618 302..468 192 31 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18524-PA 644 GI18524-PA 1..640 1..606 1569 50.4 Plus
Dmoj\GI23125-PA 1727 GI23125-PA 466..620 307..468 189 32.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17091-PA 618 GL17091-PA 6..616 5..606 1627 52.3 Plus
Dper\GL12873-PA 144 GL12873-PA 50..125 244..323 193 51.2 Plus
Dper\GL23991-PA 1773 GL23991-PA 465..642 283..468 168 31.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21171-PA 616 GA21171-PA 4..614 5..606 1626 52.2 Plus
Dpse\GA26472-PA 1765 GA26472-PA 463..640 283..468 180 32.1 Plus
Dpse\GA26472-PB 1343 GA26472-PB 463..640 283..468 180 32.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21401-PA 608 GM21401-PA 1..608 1..608 3091 93.3 Plus
Dsec\GM16440-PA 1663 GM16440-PA 451..613 297..464 190 30.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10895-PA 572 GD10895-PA 1..572 36..608 2927 94.2 Plus
Dsim\GD21594-PA 1662 GD21594-PA 451..601 297..452 189 31.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21388-PA 616 GJ21388-PA 1..612 1..606 1605 53 Plus
Dvir\GJ23097-PA 1737 GJ23097-PA 485..630 302..452 180 33.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15673-PA 663 GK15673-PA 1..661 1..606 1569 48.6 Plus
Dwil\GK12113-PA 1697 GK12113-PA 450..590 307..452 181 35.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12473-PA 606 GE12473-PA 1..606 1..608 2991 91 Plus
Dyak\GE10956-PA 1663 GE10956-PA 454..604 297..452 191 32.5 Plus

LD16826.hyp Sequence

Translation from 84 to 1910

> LD16826.hyp
MASDIPPSAIRIWMDKLKKGVGQPATVLERSLLNLMSAEAASLSVKNATE
RGILVARAGGGRSKRLALAFCQKVSRLPSSPIDPFCFECHLPGAVKKCIS
CHRSFHENCQRQDPEKPNYSVPSDKGQPYQFPVNELDNQPLNNTQNLETP
QTPTPLLDHNSNINQTLLATTDFLKHENIEWDDDVFFVCEQKGARQRKLP
RIKDELQSSLDSDEGSDLERCTHCRLLALAALHNPPQLDKQELGCLLKYS
WDQHHSWISMDVAKYMAKHWNERDKALVKRLLFKTKILGLGDIERNIAAA
KYTYLTEFLMDLLDLQHNMAVFFGQKSVEYNATKWLMRDVTHDIREIRRC
PDCYRYSNEASLSDLWFAKPCLQRHELVFAKQVGSPPWPAKVMSVSKRQP
IKYDVRFFGGTHSRALISERDITPIESDIQSHIKPRNSRALSAAIKELQC
HMMLSHYSASLFGFHADPTVAENLIKVALSHCTESTETSASGKRGRPPTP
ATPGAAKNRRLNNTTSNTSSPVPIRGIPDSVAYDSLTAEILQAHNDLLNC
RRELSATQRKLAEVKRKQWCYHCLDEAVFNCCFTASYCSVECQRRDKRRH
QASCKVTH*

LD16826.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8569-PA 608 CG8569-PA 1..608 1..608 3243 100 Plus
CG1815-PB 1121 CG1815-PB 459..618 302..468 192 31 Plus
CG1815-PC 1664 CG1815-PC 459..618 302..468 192 31 Plus