Clone LD16982 Report

Search the DGRC for LD16982

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:169
Well:82
Vector:pBS SK-
Associated Gene/TranscriptCG4040-RA
Protein status:LD16982.pep: validated full length
Preliminary Size:2076
Sequenced Size:2003

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4040 2001-01-01 Release 2 assignment
CG4040 2001-11-29 Blastp of sequenced clone
CG4040 2003-01-01 Sim4 clustering to Release 3
CG4040 2008-04-29 Release 5.5 accounting
CG4040 2008-08-15 Release 5.9 accounting
CG42388 2008-12-18 5.12 accounting
CG4040 2008-12-18 5.12 accounting

Clone Sequence Records

LD16982.complete Sequence

2003 bp (2003 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069450

> LD16982.complete
AGGAGCTCATCTTTGTCCTGCAGGAGAGAGCCGATTCGGAGCTGATCTAC
TCCAAGTCGCTATCGAAACTGGCCAACAAGCTGAACAAAGCGGGCAGGGA
AATTCCCGGGAGCGTGGCCGACGCCTGGCGTGGAGTGGCTACGGAGATGG
AGAGCCGCAGCGACATCCATCGCCAGTTGGCAGCCTCGCTAACGGATGAG
CTGGTCAAGCCGCTCAAGATCGTCGTCGAAGGACATCACAAGGCGCGCAA
GGCGGTGGAAAGCAACGTGGACAAGGCGGCGCGAGTACTGGGCGAATGGC
GAGCCAGCGAGGCGAAAGCCAAGAAGGCCTCCCATACGGCGGCGCGCGAG
AACGAGAAGCTGCAGGACGCAATGCTGGACGTGCGCATCCAGAAGTCACC
ATCGATTGCCCTGCTCCACCAGGGACCCAACAAGCAGGCCGCAGAAAAGG
AGCTCAAGTCAGCGGAGAAGGATTGCGTCAAGCTGGATAACAAGCGCAAG
AAGGCCGAGGAGGCGGTGAAGCGTGCGGATGTGGAATACTACACCCTGTG
CGTGCGTTCGGAGCGAGCACGCGTAGACTGGGAGATGGCCGTGCTCCGGG
GAAGTGCCCAACTGCAGAGCAGCGAACAGCAGCGGCTGGGCAATATGCAC
AACTTTGCCCAGCAGTATGCACGCCTCATCTCGGACATGAATCCGATACT
CGGTGGCCTGAGCACACGCCTGCAGCCGCAACTCGATGCTTGCAATGTGG
CTAAGGATATGCAAGTGGTGCGCCACATCCGCCGCAATTCGGAGGGACCC
AGTGAGCAACTCCTACCGGACTTTTACTGCGAACACACCACGCTGGCCAT
GAATCGGGAGCGTCGCAAGCACGCTCTGATCAAGCTGCTGCAGCTGGTCA
AGACGGATCTGGAGCGGGAGCGACGATCCCGCGACGGATTGAGGGGACTG
TCGCAATCGCTTAACCATCAGGAGCATCAGAACATCACCGATAAGCTGTA
CCACATTCGTTCCATGCTGACCTATTTGGAGGGCGCCCGTCTCAAGCTGC
ACTCTGCCCTCTTGGAGCTGGACCACAAGCCCAGAGCCACTCACCCACTG
GCCCAGCACATTCATATCACCCGTGACCGCACTGGTTTGCAGCAGAGCAT
CCTGAAGGTGCCCAACTGGCTGAAGAACAACGACAAGTCGCAGACGCAGC
AATCGACCAGTATGCTGGCCCACGACATCACCGACATAACCACTAACCAC
GAGGATGAGCTTCCCGACGAGAACTGCTCCCACCTGCACAGCAGTAGCCA
TAGCAACAATAATAGCAACGGCTCCTGCACAGATGTCAGTTCGGTGGTGA
AGCCTTTTAACCGAAGCAAAAGCAACATCGAGACCAATTTCACCAGTCAA
CCAAAGATAATCTCGACGACAAATGCCGCGATTGCCGTGTCCGTTAAGTC
CAAAACCCTGGCCAATCTGCAGGATGGCCATCACAATAACCAACAGCACC
ATCATCATCATCATAATCATCACAGCGATCGCGGCCAGGCGGATGGTGGA
TCCAATCAGCAGGACTCTGATTTCGATGAGTTCAGCTCGCAGGACGAGGA
CGACGAGCCGCAGCAGCCGCAGCAACAACCGCAGCCGTTGCAATCGCAGC
AGCAGCAACAGCAGCCGTTGCTGCAAAATCCAACCATCAATGGCCAAGTG
CAGACGCAGCATTTCTATCAGAATGCGCAGGAACTGCAGAAGGGCCAAAA
GAACGGATCCGTTCCGATACTGGGACGCTGCAAGGCACTGTATAGCTACA
CCCCGAAGCTCTACGACGAGCTGGAACTGAGTCCCGGCGACATCATCGAG
GTGCATGCCAAACAGGACGACGGCTGGTGGCTGGGCGCCCTGCGCAATCA
CATCGGCATCTTTCCGGCCACCTATGTGGAGGAGTGCGCCTAGTTCTAGT
TGGGAAACGCCCTGCCAGCTTCCCTCCATAGCTATAAAAAAAAAAAAAAA
AAA

LD16982.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG42388.h 4245 CG42388.h 1948..3949 1..2002 9995 99.9 Plus
CG42388.q 5208 CG42388.q 1948..3949 1..2002 9995 99.9 Plus
CG42388.k 4290 CG42388.k 1030..3031 1..2002 9995 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8944251..8945120 1116..1985 4260 99.3 Plus
chrX 22417052 chrX 8943266..8944016 254..1004 3710 99.6 Plus
chrX 22417052 chrX 8942980..8943209 27..256 1120 99.1 Plus
chrX 22417052 chrX 8944076..8944186 1005..1115 525 98.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:04:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9052450..9053336 1116..2002 4420 99.9 Plus
X 23542271 X 9051467..9052217 254..1004 3755 100 Plus
X 23542271 X 9051183..9051412 27..256 1150 100 Plus
X 23542271 X 9052278..9052388 1005..1115 555 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9060548..9061434 1116..2002 4420 99.8 Plus
X 23527363 X 9059565..9060315 254..1004 3755 100 Plus
X 23527363 X 9059281..9059510 27..256 1150 100 Plus
X 23527363 X 9060376..9060486 1005..1115 555 100 Plus
X 23527363 X 9059193..9059220 1..28 140 100 Plus
Blast to na_te.dros performed 2019-03-16 20:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 2631..2708 1349..1424 115 62.8 Plus

LD16982.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:22:07 Download gff for LD16982.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8942892..8942919 1..28 100 -> Plus
chrX 8942982..8943207 29..254 99 -> Plus
chrX 8943267..8944016 255..1004 99 -> Plus
chrX 8944076..8944186 1005..1115 98 -> Plus
chrX 8944251..8944740 1116..1605 93 == Plus
chrX 8944801..8945120 1666..1985 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:51:45 Download gff for LD16982.complete
Subject Subject Range Query Range Percent Splice Strand
CG42388-RF 74..2016 1..1943 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:23:10 Download gff for LD16982.complete
Subject Subject Range Query Range Percent Splice Strand
CG42388-RC 365..2307 1..1943 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:21:06 Download gff for LD16982.complete
Subject Subject Range Query Range Percent Splice Strand
CG42388-RC 365..2307 1..1943 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:49:46 Download gff for LD16982.complete
Subject Subject Range Query Range Percent Splice Strand
CG4040-RA 1..1797 147..1943 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:00:17 Download gff for LD16982.complete
Subject Subject Range Query Range Percent Splice Strand
CG42388-RC 365..2307 1..1943 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:58:10 Download gff for LD16982.complete
Subject Subject Range Query Range Percent Splice Strand
CG4040-RA 1..1985 1..1985 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:23:10 Download gff for LD16982.complete
Subject Subject Range Query Range Percent Splice Strand
CG42388-RC 1030..3014 1..1985 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:06 Download gff for LD16982.complete
Subject Subject Range Query Range Percent Splice Strand
CG42388-RC 1030..3014 1..1985 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:49:46 Download gff for LD16982.complete
Subject Subject Range Query Range Percent Splice Strand
CG4040-RA 1..1985 1..1985 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:17 Download gff for LD16982.complete
Subject Subject Range Query Range Percent Splice Strand
CG42388-RC 1030..3014 1..1985 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:22:07 Download gff for LD16982.complete
Subject Subject Range Query Range Percent Splice Strand
X 9051185..9051410 29..254 100 -> Plus
X 9051095..9051122 1..28 100 -> Plus
X 9051468..9052217 255..1004 100 -> Plus
X 9052278..9052388 1005..1115 100 -> Plus
X 9052450..9053319 1116..1985 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:22:07 Download gff for LD16982.complete
Subject Subject Range Query Range Percent Splice Strand
X 9051185..9051410 29..254 100 -> Plus
X 9051095..9051122 1..28 100 -> Plus
X 9051468..9052217 255..1004 100 -> Plus
X 9052278..9052388 1005..1115 100 -> Plus
X 9052450..9053319 1116..1985 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:22:07 Download gff for LD16982.complete
Subject Subject Range Query Range Percent Splice Strand
X 9051185..9051410 29..254 100 -> Plus
X 9051095..9051122 1..28 100 -> Plus
X 9051468..9052217 255..1004 100 -> Plus
X 9052278..9052388 1005..1115 100 -> Plus
X 9052450..9053319 1116..1985 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:06 Download gff for LD16982.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8945128..8945155 1..28 100 -> Plus
arm_X 8945218..8945443 29..254 100 -> Plus
arm_X 8945501..8946250 255..1004 100 -> Plus
arm_X 8946311..8946421 1005..1115 100 -> Plus
arm_X 8946483..8947352 1116..1985 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:26:12 Download gff for LD16982.complete
Subject Subject Range Query Range Percent Splice Strand
X 9059283..9059508 29..254 100 -> Plus
X 9059566..9060315 255..1004 100 -> Plus
X 9060376..9060486 1005..1115 100 -> Plus
X 9060548..9061417 1116..1985 100   Plus
X 9059193..9059220 1..28 100 -> Plus

LD16982.hyp Sequence

Translation from 2 to 1942

> LD16982.hyp
ELIFVLQERADSELIYSKSLSKLANKLNKAGREIPGSVADAWRGVATEME
SRSDIHRQLAASLTDELVKPLKIVVEGHHKARKAVESNVDKAARVLGEWR
ASEAKAKKASHTAARENEKLQDAMLDVRIQKSPSIALLHQGPNKQAAEKE
LKSAEKDCVKLDNKRKKAEEAVKRADVEYYTLCVRSERARVDWEMAVLRG
SAQLQSSEQQRLGNMHNFAQQYARLISDMNPILGGLSTRLQPQLDACNVA
KDMQVVRHIRRNSEGPSEQLLPDFYCEHTTLAMNRERRKHALIKLLQLVK
TDLERERRSRDGLRGLSQSLNHQEHQNITDKLYHIRSMLTYLEGARLKLH
SALLELDHKPRATHPLAQHIHITRDRTGLQQSILKVPNWLKNNDKSQTQQ
STSMLAHDITDITTNHEDELPDENCSHLHSSSHSNNNSNGSCTDVSSVVK
PFNRSKSNIETNFTSQPKIISTTNAAIAVSVKSKTLANLQDGHHNNQQHH
HHHHNHHSDRGQADGGSNQQDSDFDEFSSQDEDDEPQQPQQQPQPLQSQQ
QQQQPLLQNPTINGQVQTQHFYQNAQELQKGQKNGSVPILGRCKALYSYT
PKLYDELELSPGDIIEVHAKQDDGWWLGALRNHIGIFPATYVEECA*

LD16982.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG42388-PG 1225 CG42388-PG 580..1225 1..646 3359 100 Plus
CG42388-PD 675 CG42388-PD 30..675 1..646 3359 100 Plus
CG42388-PC 768 CG42388-PC 123..768 1..646 3359 100 Plus
CG42388-PF 671 CG42388-PF 26..671 1..646 3359 100 Plus
CG42388-PE 1225 CG42388-PE 580..1225 1..646 3359 100 Plus

LD16982.pep Sequence

Translation from 146 to 1942

> LD16982.pep
MESRSDIHRQLAASLTDELVKPLKIVVEGHHKARKAVESNVDKAARVLGE
WRASEAKAKKASHTAARENEKLQDAMLDVRIQKSPSIALLHQGPNKQAAE
KELKSAEKDCVKLDNKRKKAEEAVKRADVEYYTLCVRSERARVDWEMAVL
RGSAQLQSSEQQRLGNMHNFAQQYARLISDMNPILGGLSTRLQPQLDACN
VAKDMQVVRHIRRNSEGPSEQLLPDFYCEHTTLAMNRERRKHALIKLLQL
VKTDLERERRSRDGLRGLSQSLNHQEHQNITDKLYHIRSMLTYLEGARLK
LHSALLELDHKPRATHPLAQHIHITRDRTGLQQSILKVPNWLKNNDKSQT
QQSTSMLAHDITDITTNHEDELPDENCSHLHSSSHSNNNSNGSCTDVSSV
VKPFNRSKSNIETNFTSQPKIISTTNAAIAVSVKSKTLANLQDGHHNNQQ
HHHHHHNHHSDRGQADGGSNQQDSDFDEFSSQDEDDEPQQPQQQPQPLQS
QQQQQQPLLQNPTINGQVQTQHFYQNAQELQKGQKNGSVPILGRCKALYS
YTPKLYDELELSPGDIIEVHAKQDDGWWLGALRNHIGIFPATYVEECA*

LD16982.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19188-PA 539 GF19188-PA 1..487 1..497 2293 88.9 Plus
Dana\GF22925-PA 884 GF22925-PA 95..146 544..595 161 48.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18281-PA 586 GG18281-PA 1..585 1..597 2809 93.6 Plus
Dere\GG11778-PA 895 GG11778-PA 98..149 544..595 163 48.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17799-PA 575 GH17799-PA 1..575 1..598 2324 74.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
Nost-PG 1225 CG42388-PG 628..1225 1..598 3124 100 Plus
Nost-PD 675 CG42388-PD 78..675 1..598 3124 100 Plus
Nost-PC 768 CG42388-PC 171..768 1..598 3124 100 Plus
Nost-PF 671 CG42388-PF 74..671 1..598 3124 100 Plus
Nost-PE 1225 CG42388-PE 628..1225 1..598 3124 100 Plus
Nost-PH 1330 CG42388-PH 733..1330 1..598 3124 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15139-PA 579 GI15139-PA 1..578 1..597 2285 72 Plus
Dmoj\GI22122-PA 267 GI22122-PA 54..105 544..595 153 48.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12974-PA 586 GL12974-PA 1..586 1..597 2305 76.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23051-PA 586 GA23051-PA 1..586 1..597 2307 76.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13710-PA 593 GM13710-PA 1..593 1..598 3067 96.7 Plus
Dsec\GM12908-PA 774 GM12908-PA 97..148 544..595 159 48.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16922-PA 1030 GD16922-PA 1..487 1..499 2298 94.8 Plus
Dsim\GD21548-PA 892 GD21548-PA 97..148 544..595 163 48.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19000-PA 571 GJ19000-PA 1..571 1..598 2269 72.7 Plus
Dvir\GJ24244-PA 943 GJ24244-PA 84..135 544..595 163 48.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16231-PA 563 GK16231-PA 1..563 1..598 2325 77.4 Plus
Dwil\GK14156-PA 879 GK14156-PA 88..139 544..595 161 48.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15814-PA 587 GE15814-PA 1..587 1..598 3013 94.6 Plus
Dyak\GE10904-PA 903 GE10904-PA 98..149 544..595 163 48.1 Plus