BDGP Sequence Production Resources |
Search the DGRC for LD16982
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 169 |
Well: | 82 |
Vector: | pBS SK- |
Associated Gene/Transcript | CG4040-RA |
Protein status: | LD16982.pep: validated full length |
Preliminary Size: | 2076 |
Sequenced Size: | 2003 |
Gene | Date | Evidence |
---|---|---|
CG4040 | 2001-01-01 | Release 2 assignment |
CG4040 | 2001-11-29 | Blastp of sequenced clone |
CG4040 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4040 | 2008-04-29 | Release 5.5 accounting |
CG4040 | 2008-08-15 | Release 5.9 accounting |
CG42388 | 2008-12-18 | 5.12 accounting |
CG4040 | 2008-12-18 | 5.12 accounting |
2003 bp (2003 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069450
> LD16982.complete AGGAGCTCATCTTTGTCCTGCAGGAGAGAGCCGATTCGGAGCTGATCTAC TCCAAGTCGCTATCGAAACTGGCCAACAAGCTGAACAAAGCGGGCAGGGA AATTCCCGGGAGCGTGGCCGACGCCTGGCGTGGAGTGGCTACGGAGATGG AGAGCCGCAGCGACATCCATCGCCAGTTGGCAGCCTCGCTAACGGATGAG CTGGTCAAGCCGCTCAAGATCGTCGTCGAAGGACATCACAAGGCGCGCAA GGCGGTGGAAAGCAACGTGGACAAGGCGGCGCGAGTACTGGGCGAATGGC GAGCCAGCGAGGCGAAAGCCAAGAAGGCCTCCCATACGGCGGCGCGCGAG AACGAGAAGCTGCAGGACGCAATGCTGGACGTGCGCATCCAGAAGTCACC ATCGATTGCCCTGCTCCACCAGGGACCCAACAAGCAGGCCGCAGAAAAGG AGCTCAAGTCAGCGGAGAAGGATTGCGTCAAGCTGGATAACAAGCGCAAG AAGGCCGAGGAGGCGGTGAAGCGTGCGGATGTGGAATACTACACCCTGTG CGTGCGTTCGGAGCGAGCACGCGTAGACTGGGAGATGGCCGTGCTCCGGG GAAGTGCCCAACTGCAGAGCAGCGAACAGCAGCGGCTGGGCAATATGCAC AACTTTGCCCAGCAGTATGCACGCCTCATCTCGGACATGAATCCGATACT CGGTGGCCTGAGCACACGCCTGCAGCCGCAACTCGATGCTTGCAATGTGG CTAAGGATATGCAAGTGGTGCGCCACATCCGCCGCAATTCGGAGGGACCC AGTGAGCAACTCCTACCGGACTTTTACTGCGAACACACCACGCTGGCCAT GAATCGGGAGCGTCGCAAGCACGCTCTGATCAAGCTGCTGCAGCTGGTCA AGACGGATCTGGAGCGGGAGCGACGATCCCGCGACGGATTGAGGGGACTG TCGCAATCGCTTAACCATCAGGAGCATCAGAACATCACCGATAAGCTGTA CCACATTCGTTCCATGCTGACCTATTTGGAGGGCGCCCGTCTCAAGCTGC ACTCTGCCCTCTTGGAGCTGGACCACAAGCCCAGAGCCACTCACCCACTG GCCCAGCACATTCATATCACCCGTGACCGCACTGGTTTGCAGCAGAGCAT CCTGAAGGTGCCCAACTGGCTGAAGAACAACGACAAGTCGCAGACGCAGC AATCGACCAGTATGCTGGCCCACGACATCACCGACATAACCACTAACCAC GAGGATGAGCTTCCCGACGAGAACTGCTCCCACCTGCACAGCAGTAGCCA TAGCAACAATAATAGCAACGGCTCCTGCACAGATGTCAGTTCGGTGGTGA AGCCTTTTAACCGAAGCAAAAGCAACATCGAGACCAATTTCACCAGTCAA CCAAAGATAATCTCGACGACAAATGCCGCGATTGCCGTGTCCGTTAAGTC CAAAACCCTGGCCAATCTGCAGGATGGCCATCACAATAACCAACAGCACC ATCATCATCATCATAATCATCACAGCGATCGCGGCCAGGCGGATGGTGGA TCCAATCAGCAGGACTCTGATTTCGATGAGTTCAGCTCGCAGGACGAGGA CGACGAGCCGCAGCAGCCGCAGCAACAACCGCAGCCGTTGCAATCGCAGC AGCAGCAACAGCAGCCGTTGCTGCAAAATCCAACCATCAATGGCCAAGTG CAGACGCAGCATTTCTATCAGAATGCGCAGGAACTGCAGAAGGGCCAAAA GAACGGATCCGTTCCGATACTGGGACGCTGCAAGGCACTGTATAGCTACA CCCCGAAGCTCTACGACGAGCTGGAACTGAGTCCCGGCGACATCATCGAG GTGCATGCCAAACAGGACGACGGCTGGTGGCTGGGCGCCCTGCGCAATCA CATCGGCATCTTTCCGGCCACCTATGTGGAGGAGTGCGCCTAGTTCTAGT TGGGAAACGCCCTGCCAGCTTCCCTCCATAGCTATAAAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 8944251..8945120 | 1116..1985 | 4260 | 99.3 | Plus |
chrX | 22417052 | chrX | 8943266..8944016 | 254..1004 | 3710 | 99.6 | Plus |
chrX | 22417052 | chrX | 8942980..8943209 | 27..256 | 1120 | 99.1 | Plus |
chrX | 22417052 | chrX | 8944076..8944186 | 1005..1115 | 525 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 9052450..9053336 | 1116..2002 | 4420 | 99.9 | Plus |
X | 23542271 | X | 9051467..9052217 | 254..1004 | 3755 | 100 | Plus |
X | 23542271 | X | 9051183..9051412 | 27..256 | 1150 | 100 | Plus |
X | 23542271 | X | 9052278..9052388 | 1005..1115 | 555 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 9060548..9061434 | 1116..2002 | 4420 | 99.8 | Plus |
X | 23527363 | X | 9059565..9060315 | 254..1004 | 3755 | 100 | Plus |
X | 23527363 | X | 9059281..9059510 | 27..256 | 1150 | 100 | Plus |
X | 23527363 | X | 9060376..9060486 | 1005..1115 | 555 | 100 | Plus |
X | 23527363 | X | 9059193..9059220 | 1..28 | 140 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 2631..2708 | 1349..1424 | 115 | 62.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 8942892..8942919 | 1..28 | 100 | -> | Plus |
chrX | 8942982..8943207 | 29..254 | 99 | -> | Plus |
chrX | 8943267..8944016 | 255..1004 | 99 | -> | Plus |
chrX | 8944076..8944186 | 1005..1115 | 98 | -> | Plus |
chrX | 8944251..8944740 | 1116..1605 | 93 | == | Plus |
chrX | 8944801..8945120 | 1666..1985 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42388-RF | 74..2016 | 1..1943 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42388-RC | 365..2307 | 1..1943 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42388-RC | 365..2307 | 1..1943 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4040-RA | 1..1797 | 147..1943 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42388-RC | 365..2307 | 1..1943 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4040-RA | 1..1985 | 1..1985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42388-RC | 1030..3014 | 1..1985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42388-RC | 1030..3014 | 1..1985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4040-RA | 1..1985 | 1..1985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42388-RC | 1030..3014 | 1..1985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9051185..9051410 | 29..254 | 100 | -> | Plus |
X | 9051095..9051122 | 1..28 | 100 | -> | Plus |
X | 9051468..9052217 | 255..1004 | 100 | -> | Plus |
X | 9052278..9052388 | 1005..1115 | 100 | -> | Plus |
X | 9052450..9053319 | 1116..1985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9051185..9051410 | 29..254 | 100 | -> | Plus |
X | 9051095..9051122 | 1..28 | 100 | -> | Plus |
X | 9051468..9052217 | 255..1004 | 100 | -> | Plus |
X | 9052278..9052388 | 1005..1115 | 100 | -> | Plus |
X | 9052450..9053319 | 1116..1985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9051185..9051410 | 29..254 | 100 | -> | Plus |
X | 9051095..9051122 | 1..28 | 100 | -> | Plus |
X | 9051468..9052217 | 255..1004 | 100 | -> | Plus |
X | 9052278..9052388 | 1005..1115 | 100 | -> | Plus |
X | 9052450..9053319 | 1116..1985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 8945128..8945155 | 1..28 | 100 | -> | Plus |
arm_X | 8945218..8945443 | 29..254 | 100 | -> | Plus |
arm_X | 8945501..8946250 | 255..1004 | 100 | -> | Plus |
arm_X | 8946311..8946421 | 1005..1115 | 100 | -> | Plus |
arm_X | 8946483..8947352 | 1116..1985 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9059283..9059508 | 29..254 | 100 | -> | Plus |
X | 9059566..9060315 | 255..1004 | 100 | -> | Plus |
X | 9060376..9060486 | 1005..1115 | 100 | -> | Plus |
X | 9060548..9061417 | 1116..1985 | 100 | Plus | |
X | 9059193..9059220 | 1..28 | 100 | -> | Plus |
Translation from 2 to 1942
> LD16982.hyp ELIFVLQERADSELIYSKSLSKLANKLNKAGREIPGSVADAWRGVATEME SRSDIHRQLAASLTDELVKPLKIVVEGHHKARKAVESNVDKAARVLGEWR ASEAKAKKASHTAARENEKLQDAMLDVRIQKSPSIALLHQGPNKQAAEKE LKSAEKDCVKLDNKRKKAEEAVKRADVEYYTLCVRSERARVDWEMAVLRG SAQLQSSEQQRLGNMHNFAQQYARLISDMNPILGGLSTRLQPQLDACNVA KDMQVVRHIRRNSEGPSEQLLPDFYCEHTTLAMNRERRKHALIKLLQLVK TDLERERRSRDGLRGLSQSLNHQEHQNITDKLYHIRSMLTYLEGARLKLH SALLELDHKPRATHPLAQHIHITRDRTGLQQSILKVPNWLKNNDKSQTQQ STSMLAHDITDITTNHEDELPDENCSHLHSSSHSNNNSNGSCTDVSSVVK PFNRSKSNIETNFTSQPKIISTTNAAIAVSVKSKTLANLQDGHHNNQQHH HHHHNHHSDRGQADGGSNQQDSDFDEFSSQDEDDEPQQPQQQPQPLQSQQ QQQQPLLQNPTINGQVQTQHFYQNAQELQKGQKNGSVPILGRCKALYSYT PKLYDELELSPGDIIEVHAKQDDGWWLGALRNHIGIFPATYVEECA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42388-PG | 1225 | CG42388-PG | 580..1225 | 1..646 | 3359 | 100 | Plus |
CG42388-PD | 675 | CG42388-PD | 30..675 | 1..646 | 3359 | 100 | Plus |
CG42388-PC | 768 | CG42388-PC | 123..768 | 1..646 | 3359 | 100 | Plus |
CG42388-PF | 671 | CG42388-PF | 26..671 | 1..646 | 3359 | 100 | Plus |
CG42388-PE | 1225 | CG42388-PE | 580..1225 | 1..646 | 3359 | 100 | Plus |
Translation from 146 to 1942
> LD16982.pep MESRSDIHRQLAASLTDELVKPLKIVVEGHHKARKAVESNVDKAARVLGE WRASEAKAKKASHTAARENEKLQDAMLDVRIQKSPSIALLHQGPNKQAAE KELKSAEKDCVKLDNKRKKAEEAVKRADVEYYTLCVRSERARVDWEMAVL RGSAQLQSSEQQRLGNMHNFAQQYARLISDMNPILGGLSTRLQPQLDACN VAKDMQVVRHIRRNSEGPSEQLLPDFYCEHTTLAMNRERRKHALIKLLQL VKTDLERERRSRDGLRGLSQSLNHQEHQNITDKLYHIRSMLTYLEGARLK LHSALLELDHKPRATHPLAQHIHITRDRTGLQQSILKVPNWLKNNDKSQT QQSTSMLAHDITDITTNHEDELPDENCSHLHSSSHSNNNSNGSCTDVSSV VKPFNRSKSNIETNFTSQPKIISTTNAAIAVSVKSKTLANLQDGHHNNQQ HHHHHHNHHSDRGQADGGSNQQDSDFDEFSSQDEDDEPQQPQQQPQPLQS QQQQQQPLLQNPTINGQVQTQHFYQNAQELQKGQKNGSVPILGRCKALYS YTPKLYDELELSPGDIIEVHAKQDDGWWLGALRNHIGIFPATYVEECA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19188-PA | 539 | GF19188-PA | 1..487 | 1..497 | 2293 | 88.9 | Plus |
Dana\GF22925-PA | 884 | GF22925-PA | 95..146 | 544..595 | 161 | 48.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18281-PA | 586 | GG18281-PA | 1..585 | 1..597 | 2809 | 93.6 | Plus |
Dere\GG11778-PA | 895 | GG11778-PA | 98..149 | 544..595 | 163 | 48.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17799-PA | 575 | GH17799-PA | 1..575 | 1..598 | 2324 | 74.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nost-PG | 1225 | CG42388-PG | 628..1225 | 1..598 | 3124 | 100 | Plus |
Nost-PD | 675 | CG42388-PD | 78..675 | 1..598 | 3124 | 100 | Plus |
Nost-PC | 768 | CG42388-PC | 171..768 | 1..598 | 3124 | 100 | Plus |
Nost-PF | 671 | CG42388-PF | 74..671 | 1..598 | 3124 | 100 | Plus |
Nost-PE | 1225 | CG42388-PE | 628..1225 | 1..598 | 3124 | 100 | Plus |
Nost-PH | 1330 | CG42388-PH | 733..1330 | 1..598 | 3124 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15139-PA | 579 | GI15139-PA | 1..578 | 1..597 | 2285 | 72 | Plus |
Dmoj\GI22122-PA | 267 | GI22122-PA | 54..105 | 544..595 | 153 | 48.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12974-PA | 586 | GL12974-PA | 1..586 | 1..597 | 2305 | 76.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA23051-PA | 586 | GA23051-PA | 1..586 | 1..597 | 2307 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13710-PA | 593 | GM13710-PA | 1..593 | 1..598 | 3067 | 96.7 | Plus |
Dsec\GM12908-PA | 774 | GM12908-PA | 97..148 | 544..595 | 159 | 48.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16922-PA | 1030 | GD16922-PA | 1..487 | 1..499 | 2298 | 94.8 | Plus |
Dsim\GD21548-PA | 892 | GD21548-PA | 97..148 | 544..595 | 163 | 48.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19000-PA | 571 | GJ19000-PA | 1..571 | 1..598 | 2269 | 72.7 | Plus |
Dvir\GJ24244-PA | 943 | GJ24244-PA | 84..135 | 544..595 | 163 | 48.1 | Plus |