Clone LD16996 Report

Search the DGRC for LD16996

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:169
Well:96
Vector:pBS SK-
Associated Gene/TranscriptFucTB-RA
Protein status:LD16996.pep: gold
Preliminary Size:1770
Sequenced Size:1511

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4435 2003-01-01 Sim4 clustering to Release 3
FucTB 2008-04-29 Release 5.5 accounting
FucTB 2008-08-15 Release 5.9 accounting
FucTB 2008-12-18 5.12 accounting

Clone Sequence Records

LD16996.complete Sequence

1511 bp (1511 high quality bases) assembled on 2005-06-20

GenBank Submission: BT023506

> LD16996.complete
CTCGAGCGAAATTGCGGCGCACCGGCTTTTTGAATCTTTTCGAAGTGGTG
CAGCGAATAATTTTGATTATCTAGCTAGCAAAGAACTGCAAAGATAATCA
TGCGACTGGCACAACGTTACGGAATTGCACTGGTTGCGCTGCTTATGGTT
GGGGCGACCGTATTGTTCTTCTGGTCGGAAAATATCATTAACTACGAAAA
CATCAAGTTCAACAGTCCTGTGGAGCTGGTCTGGTGGTCCAGGGATATGT
CCTGGAATTACGACGTGCAGCGCCAGTGCGGAATTCATACTTGCCGCATC
ACCAACAAGCGGAGCCGCCGTCCGTGGGCCCGGGGCGTCCTGTTTTACGG
CTCAAACATAAAGACGGGAGACTTTCCCCTGCCTCGGAACGAGCACCAAA
TCTGGGCCCTACTGCATGAAGAATCACCAAGGAACACCCCTTTTGTGTCC
AATAAAGAGTTCCTTCGCCACTTCCATTTCACATCCACGTTTAGCCGCTA
CAGCAACTTGCCGCTGACTACGATGTACTTGCCCAGTGGCGAGGCGCTTA
CTTCGAAGGATTACTATGTTACGTTTGACGGCAAGTCAAAGTACGGATAC
CGTCCATCCACATCGGTGGTGTTCCTCCAAAGCGACTGCGACACGATGTC
TGGAAGGGAGGACTACGTAAAGGAACTGATGAAACATCTTCCGATCGATT
CCTACGGCAGCTGCCTACGGAATAGAGATCTGCCAGAGAGCTTGCAGAAG
GATTACTTGAATAATTTATATTCACCGGAGTTGCTGCGTTTCCTGTCCGA
ATACAAGTTCATGATTGCCATTGAGAACGCTGCCTGTCCGGATTATATTA
CCGAAAAGTTTTGGCGTCCTTTGATAATGGGAGTTATTCCAATTTACTTT
GGCTCACCCACCATAAAAGACTGGGAACCGAATAATAAATCTGCAATTTT
TGTGAACGACTTTCAAAATCCTCAGGCATTGGTAGAGTATCTCAATAAGT
TGGCGGATAACAAAAAGCTGTACAATTCGTACCGCCAACACAAACTAAAT
CGGCGTAACCCCATTTCCAACAAAAAGCTACTCCACAACCTTGTCACGCG
CCAGTACCACATAGGCGATTCTTCTCCGGGAGCATCACTCTTTGAGAAGT
TCGAGTGTGCAGTGTGCTACCATGTAATCAATACTGCCAGGAACGTGAAG
GCCGACTTGCGTCATTACAATTGTCCCCTGGAACCGGTGTATGCTAAGAT
GGAGGGTCAGAAAATTCCTCAAAATGTCGCGGATTGGCGAGCCGCAATGG
AGGTAGGCCAGTGCCAAGCTAAGGTACTCGATGAGTTCTTCCGTCGAGAC
ATCGGTTTCAATGACGCAGAGTTTGATGCTGAGCTCAATCGGAGGATTGA
GGGAAACAATTGCAGTAATAGTTCAAATACTTAATTCGAAAAATACGTCA
ATCATACAGACTTTACCATGTGATAATAAATGTATATTAAACTAAAAAAA
AAAAAAAAAAA

LD16996.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
FucTB-RA 1663 FucTB-RA 88..1581 1..1494 7470 100 Plus
FucTB.a 1229 FucTB.a 70..1229 334..1493 5800 100 Plus
FucTB.b 1441 FucTB.b 6..924 1..919 4595 100 Plus
FucTB.b 1441 FucTB.b 924..1441 976..1493 2590 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9427707..9428281 1493..919 2800 99.1 Minus
chr2L 23010047 chr2L 9428958..9429365 740..333 2040 100 Minus
chr2L 23010047 chr2L 9429631..9429964 334..1 1640 99.4 Minus
chr2L 23010047 chr2L 9428346..9428526 919..739 905 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:04:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9428770..9429345 1494..919 2880 100 Minus
2L 23513712 2L 9430023..9430430 740..333 2040 100 Minus
2L 23513712 2L 9430696..9431029 334..1 1670 100 Minus
2L 23513712 2L 9429411..9429591 919..739 905 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9428770..9429345 1494..919 2880 100 Minus
2L 23513712 2L 9430023..9430430 740..333 2040 100 Minus
2L 23513712 2L 9430696..9431029 334..1 1670 100 Minus
2L 23513712 2L 9429411..9429591 919..739 905 100 Minus
Blast to na_te.dros performed 2019-03-16 11:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT4 1447 Dbuz\BuT4 BUT4 1447bp 1191..1276 1018..932 117 60.9 Minus

LD16996.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:23:06 Download gff for LD16996.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9428347..9428524 741..918 100 <- Minus
chr2L 9427707..9428281 919..1493 99 <- Minus
chr2L 9428958..9429364 334..740 100 <- Minus
chr2L 9429632..9429964 1..333 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:51:46 Download gff for LD16996.complete
Subject Subject Range Query Range Percent Splice Strand
FucTB-RA 1..1335 100..1434 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:57:24 Download gff for LD16996.complete
Subject Subject Range Query Range Percent Splice Strand
FucTB-RA 1..1335 100..1434 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:13:20 Download gff for LD16996.complete
Subject Subject Range Query Range Percent Splice Strand
FucTB-RA 1..1335 100..1434 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:38:16 Download gff for LD16996.complete
Subject Subject Range Query Range Percent Splice Strand
FucTB-RA 1..1335 100..1434 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:50 Download gff for LD16996.complete
Subject Subject Range Query Range Percent Splice Strand
FucTB-RA 1..1335 100..1434 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:36:47 Download gff for LD16996.complete
Subject Subject Range Query Range Percent Splice Strand
FucTB-RA 1..1434 1..1434 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:57:24 Download gff for LD16996.complete
Subject Subject Range Query Range Percent Splice Strand
FucTB-RA 1..1493 1..1493 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:20 Download gff for LD16996.complete
Subject Subject Range Query Range Percent Splice Strand
FucTB-RA 24..1516 1..1493 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:38:16 Download gff for LD16996.complete
Subject Subject Range Query Range Percent Splice Strand
FucTB-RA 1..1434 1..1434 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:50 Download gff for LD16996.complete
Subject Subject Range Query Range Percent Splice Strand
FucTB-RA 24..1516 1..1493 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:23:06 Download gff for LD16996.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9428771..9429345 919..1493 100 <- Minus
2L 9429412..9429589 741..918 100 <- Minus
2L 9430023..9430429 334..740 100 <- Minus
2L 9430697..9431029 1..333 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:23:06 Download gff for LD16996.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9428771..9429345 919..1493 100 <- Minus
2L 9429412..9429589 741..918 100 <- Minus
2L 9430023..9430429 334..740 100 <- Minus
2L 9430697..9431029 1..333 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:23:06 Download gff for LD16996.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9428771..9429345 919..1493 100 <- Minus
2L 9429412..9429589 741..918 100 <- Minus
2L 9430023..9430429 334..740 100 <- Minus
2L 9430697..9431029 1..333 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:20 Download gff for LD16996.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9428771..9429345 919..1493 100 <- Minus
arm_2L 9429412..9429589 741..918 100 <- Minus
arm_2L 9430023..9430429 334..740 100 <- Minus
arm_2L 9430697..9431029 1..333 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:16:49 Download gff for LD16996.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9428771..9429345 919..1493 100 <- Minus
2L 9429412..9429589 741..918 100 <- Minus
2L 9430023..9430429 334..740 100 <- Minus
2L 9430697..9431029 1..333 100   Minus

LD16996.pep Sequence

Translation from 99 to 1433

> LD16996.pep
MRLAQRYGIALVALLMVGATVLFFWSENIINYENIKFNSPVELVWWSRDM
SWNYDVQRQCGIHTCRITNKRSRRPWARGVLFYGSNIKTGDFPLPRNEHQ
IWALLHEESPRNTPFVSNKEFLRHFHFTSTFSRYSNLPLTTMYLPSGEAL
TSKDYYVTFDGKSKYGYRPSTSVVFLQSDCDTMSGREDYVKELMKHLPID
SYGSCLRNRDLPESLQKDYLNNLYSPELLRFLSEYKFMIAIENAACPDYI
TEKFWRPLIMGVIPIYFGSPTIKDWEPNNKSAIFVNDFQNPQALVEYLNK
LADNKKLYNSYRQHKLNRRNPISNKKLLHNLVTRQYHIGDSSPGASLFEK
FECAVCYHVINTARNVKADLRHYNCPLEPVYAKMEGQKIPQNVADWRAAM
EVGQCQAKVLDEFFRRDIGFNDAEFDAELNRRIEGNNCSNSSNT*

LD16996.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22016-PA 441 GF22016-PA 1..439 1..438 1601 64.7 Plus
Dana\GF23688-PA 498 GF23688-PA 162..433 31..311 245 29.3 Plus
Dana\GF22153-PA 459 GF22153-PA 137..410 59..324 180 23.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24028-PA 443 GG24028-PA 1..443 1..444 2091 86.5 Plus
Dere\GG15882-PA 503 GG15882-PA 164..435 31..311 228 29 Plus
Dere\GG17499-PA 403 GG17499-PA 94..350 59..311 165 25.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13596-PA 444 GH13596-PA 39..444 38..439 1269 57.6 Plus
Dgri\GH14528-PA 502 GH14528-PA 166..437 31..311 247 29.7 Plus
Dgri\GH12859-PA 395 GH12859-PA 84..357 59..322 175 25.1 Plus
Dgri\GH23360-PA 319 GH23360-PA 26..270 60..315 159 26 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
FucTB-PD 444 CG4435-PD 1..444 1..444 2399 100 Plus
FucTB-PA 444 CG4435-PA 1..444 1..444 2399 100 Plus
FucTB-PC 207 CG4435-PC 1..207 238..444 1117 100 Plus
FucTA-PB 503 CG6869-PB 164..439 31..315 252 29.5 Plus
FucTA-PA 503 CG6869-PA 164..439 31..315 252 29.5 Plus
FucTC-PB 425 CG40305-PB 117..372 60..311 160 23.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10147-PA 441 GI10147-PA 11..440 9..438 1240 53.1 Plus
Dmoj\GI13099-PA 511 GI13099-PA 175..446 31..311 240 29.4 Plus
Dmoj\GI14950-PA 398 GI14950-PA 88..351 60..314 167 23.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25635-PA 641 GL25635-PA 271..638 75..442 1242 61.7 Plus
Dper\GL25635-PA 641 GL25635-PA 1..274 1..273 915 61.3 Plus
Dper\GL25636-PA 697 GL25636-PA 471..691 215..439 759 60 Plus
Dper\GL25636-PA 697 GL25636-PA 1..213 1..212 624 54.5 Plus
Dper\GL24771-PA 521 GL24771-PA 185..456 31..311 233 29 Plus
Dper\GL18621-PA 443 GL18621-PA 236..375 165..311 194 36 Plus
Dper\GL16534-PA 395 GL16534-PA 215..348 173..314 164 31.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\fut10B-PA 641 GA18182-PA 271..638 75..442 1229 60.6 Plus
Dpse\fut10B-PA 641 GA18182-PA 1..274 1..273 917 61.3 Plus
Dpse\fut10C-PA 697 GA25362-PA 471..691 215..439 755 60.4 Plus
Dpse\fut10C-PA 697 GA25362-PA 1..213 1..212 627 54.9 Plus
Dpse\GA19918-PA 521 GA19918-PA 185..456 31..311 233 29 Plus
Dpse\GA25723-PA 481 GA25723-PA 175..424 56..315 216 30.6 Plus
Dpse\GA25724-PA 522 GA25724-PA 315..454 165..311 198 36.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12463-PA 443 GM12463-PA 1..443 1..444 2275 93.9 Plus
Dsec\GM10051-PA 332 GM10051-PA 21..279 57..311 163 23.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22356-PA 443 GD22356-PA 1..443 1..444 2279 93.9 Plus
Dsim\GD14528-PA 503 GD14528-PA 164..435 31..311 228 29 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18372-PA 444 GJ18372-PA 7..444 5..441 1270 53.9 Plus
Dvir\GJ13846-PA 524 GJ13846-PA 188..463 31..315 245 29.5 Plus
Dvir\GJ18920-PA 395 GJ18920-PA 84..366 59..337 156 23.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24808-PA 433 GK24808-PA 42..430 38..429 1275 59.8 Plus
Dwil\GK20401-PA 549 GK20401-PA 211..486 31..315 240 28.9 Plus
Dwil\GK20026-PA 408 GK20026-PA 221..348 173..311 168 34.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\fut10-PA 443 GE10522-PA 1..442 1..443 2069 84.9 Plus
Dyak\GE22226-PA 503 GE22226-PA 164..435 31..311 230 28.3 Plus
Dyak\GE15255-PA 403 GE15255-PA 94..365 59..322 180 23.9 Plus

LD16996.hyp Sequence

Translation from 99 to 1433

> LD16996.hyp
MRLAQRYGIALVALLMVGATVLFFWSENIINYENIKFNSPVELVWWSRDM
SWNYDVQRQCGIHTCRITNKRSRRPWARGVLFYGSNIKTGDFPLPRNEHQ
IWALLHEESPRNTPFVSNKEFLRHFHFTSTFSRYSNLPLTTMYLPSGEAL
TSKDYYVTFDGKSKYGYRPSTSVVFLQSDCDTMSGREDYVKELMKHLPID
SYGSCLRNRDLPESLQKDYLNNLYSPELLRFLSEYKFMIAIENAACPDYI
TEKFWRPLIMGVIPIYFGSPTIKDWEPNNKSAIFVNDFQNPQALVEYLNK
LADNKKLYNSYRQHKLNRRNPISNKKLLHNLVTRQYHIGDSSPGASLFEK
FECAVCYHVINTARNVKADLRHYNCPLEPVYAKMEGQKIPQNVADWRAAM
EVGQCQAKVLDEFFRRDIGFNDAEFDAELNRRIEGNNCSNSSNT*

LD16996.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
FucTB-PD 444 CG4435-PD 1..444 1..444 2399 100 Plus
FucTB-PA 444 CG4435-PA 1..444 1..444 2399 100 Plus
FucTB-PC 207 CG4435-PC 1..207 238..444 1117 100 Plus
FucTA-PB 503 CG6869-PB 164..439 31..315 252 29.5 Plus
FucTA-PA 503 CG6869-PA 164..439 31..315 252 29.5 Plus