BDGP Sequence Production Resources |
Search the DGRC for LD16996
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 169 |
Well: | 96 |
Vector: | pBS SK- |
Associated Gene/Transcript | FucTB-RA |
Protein status: | LD16996.pep: gold |
Preliminary Size: | 1770 |
Sequenced Size: | 1511 |
Gene | Date | Evidence |
---|---|---|
CG4435 | 2003-01-01 | Sim4 clustering to Release 3 |
FucTB | 2008-04-29 | Release 5.5 accounting |
FucTB | 2008-08-15 | Release 5.9 accounting |
FucTB | 2008-12-18 | 5.12 accounting |
1511 bp (1511 high quality bases) assembled on 2005-06-20
GenBank Submission: BT023506
> LD16996.complete CTCGAGCGAAATTGCGGCGCACCGGCTTTTTGAATCTTTTCGAAGTGGTG CAGCGAATAATTTTGATTATCTAGCTAGCAAAGAACTGCAAAGATAATCA TGCGACTGGCACAACGTTACGGAATTGCACTGGTTGCGCTGCTTATGGTT GGGGCGACCGTATTGTTCTTCTGGTCGGAAAATATCATTAACTACGAAAA CATCAAGTTCAACAGTCCTGTGGAGCTGGTCTGGTGGTCCAGGGATATGT CCTGGAATTACGACGTGCAGCGCCAGTGCGGAATTCATACTTGCCGCATC ACCAACAAGCGGAGCCGCCGTCCGTGGGCCCGGGGCGTCCTGTTTTACGG CTCAAACATAAAGACGGGAGACTTTCCCCTGCCTCGGAACGAGCACCAAA TCTGGGCCCTACTGCATGAAGAATCACCAAGGAACACCCCTTTTGTGTCC AATAAAGAGTTCCTTCGCCACTTCCATTTCACATCCACGTTTAGCCGCTA CAGCAACTTGCCGCTGACTACGATGTACTTGCCCAGTGGCGAGGCGCTTA CTTCGAAGGATTACTATGTTACGTTTGACGGCAAGTCAAAGTACGGATAC CGTCCATCCACATCGGTGGTGTTCCTCCAAAGCGACTGCGACACGATGTC TGGAAGGGAGGACTACGTAAAGGAACTGATGAAACATCTTCCGATCGATT CCTACGGCAGCTGCCTACGGAATAGAGATCTGCCAGAGAGCTTGCAGAAG GATTACTTGAATAATTTATATTCACCGGAGTTGCTGCGTTTCCTGTCCGA ATACAAGTTCATGATTGCCATTGAGAACGCTGCCTGTCCGGATTATATTA CCGAAAAGTTTTGGCGTCCTTTGATAATGGGAGTTATTCCAATTTACTTT GGCTCACCCACCATAAAAGACTGGGAACCGAATAATAAATCTGCAATTTT TGTGAACGACTTTCAAAATCCTCAGGCATTGGTAGAGTATCTCAATAAGT TGGCGGATAACAAAAAGCTGTACAATTCGTACCGCCAACACAAACTAAAT CGGCGTAACCCCATTTCCAACAAAAAGCTACTCCACAACCTTGTCACGCG CCAGTACCACATAGGCGATTCTTCTCCGGGAGCATCACTCTTTGAGAAGT TCGAGTGTGCAGTGTGCTACCATGTAATCAATACTGCCAGGAACGTGAAG GCCGACTTGCGTCATTACAATTGTCCCCTGGAACCGGTGTATGCTAAGAT GGAGGGTCAGAAAATTCCTCAAAATGTCGCGGATTGGCGAGCCGCAATGG AGGTAGGCCAGTGCCAAGCTAAGGTACTCGATGAGTTCTTCCGTCGAGAC ATCGGTTTCAATGACGCAGAGTTTGATGCTGAGCTCAATCGGAGGATTGA GGGAAACAATTGCAGTAATAGTTCAAATACTTAATTCGAAAAATACGTCA ATCATACAGACTTTACCATGTGATAATAAATGTATATTAAACTAAAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
FucTB-RA | 1663 | FucTB-RA | 88..1581 | 1..1494 | 7470 | 100 | Plus |
FucTB.a | 1229 | FucTB.a | 70..1229 | 334..1493 | 5800 | 100 | Plus |
FucTB.b | 1441 | FucTB.b | 6..924 | 1..919 | 4595 | 100 | Plus |
FucTB.b | 1441 | FucTB.b | 924..1441 | 976..1493 | 2590 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 9427707..9428281 | 1493..919 | 2800 | 99.1 | Minus |
chr2L | 23010047 | chr2L | 9428958..9429365 | 740..333 | 2040 | 100 | Minus |
chr2L | 23010047 | chr2L | 9429631..9429964 | 334..1 | 1640 | 99.4 | Minus |
chr2L | 23010047 | chr2L | 9428346..9428526 | 919..739 | 905 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9428770..9429345 | 1494..919 | 2880 | 100 | Minus |
2L | 23513712 | 2L | 9430023..9430430 | 740..333 | 2040 | 100 | Minus |
2L | 23513712 | 2L | 9430696..9431029 | 334..1 | 1670 | 100 | Minus |
2L | 23513712 | 2L | 9429411..9429591 | 919..739 | 905 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9428770..9429345 | 1494..919 | 2880 | 100 | Minus |
2L | 23513712 | 2L | 9430023..9430430 | 740..333 | 2040 | 100 | Minus |
2L | 23513712 | 2L | 9430696..9431029 | 334..1 | 1670 | 100 | Minus |
2L | 23513712 | 2L | 9429411..9429591 | 919..739 | 905 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbuz\BuT4 | 1447 | Dbuz\BuT4 BUT4 1447bp | 1191..1276 | 1018..932 | 117 | 60.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9428347..9428524 | 741..918 | 100 | <- | Minus |
chr2L | 9427707..9428281 | 919..1493 | 99 | <- | Minus |
chr2L | 9428958..9429364 | 334..740 | 100 | <- | Minus |
chr2L | 9429632..9429964 | 1..333 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
FucTB-RA | 1..1335 | 100..1434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
FucTB-RA | 1..1335 | 100..1434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
FucTB-RA | 1..1335 | 100..1434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
FucTB-RA | 1..1335 | 100..1434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
FucTB-RA | 1..1335 | 100..1434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
FucTB-RA | 1..1434 | 1..1434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
FucTB-RA | 1..1493 | 1..1493 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
FucTB-RA | 24..1516 | 1..1493 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
FucTB-RA | 1..1434 | 1..1434 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
FucTB-RA | 24..1516 | 1..1493 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9428771..9429345 | 919..1493 | 100 | <- | Minus |
2L | 9429412..9429589 | 741..918 | 100 | <- | Minus |
2L | 9430023..9430429 | 334..740 | 100 | <- | Minus |
2L | 9430697..9431029 | 1..333 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9428771..9429345 | 919..1493 | 100 | <- | Minus |
2L | 9429412..9429589 | 741..918 | 100 | <- | Minus |
2L | 9430023..9430429 | 334..740 | 100 | <- | Minus |
2L | 9430697..9431029 | 1..333 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9428771..9429345 | 919..1493 | 100 | <- | Minus |
2L | 9429412..9429589 | 741..918 | 100 | <- | Minus |
2L | 9430023..9430429 | 334..740 | 100 | <- | Minus |
2L | 9430697..9431029 | 1..333 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9428771..9429345 | 919..1493 | 100 | <- | Minus |
arm_2L | 9429412..9429589 | 741..918 | 100 | <- | Minus |
arm_2L | 9430023..9430429 | 334..740 | 100 | <- | Minus |
arm_2L | 9430697..9431029 | 1..333 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9428771..9429345 | 919..1493 | 100 | <- | Minus |
2L | 9429412..9429589 | 741..918 | 100 | <- | Minus |
2L | 9430023..9430429 | 334..740 | 100 | <- | Minus |
2L | 9430697..9431029 | 1..333 | 100 | Minus |
Translation from 99 to 1433
> LD16996.pep MRLAQRYGIALVALLMVGATVLFFWSENIINYENIKFNSPVELVWWSRDM SWNYDVQRQCGIHTCRITNKRSRRPWARGVLFYGSNIKTGDFPLPRNEHQ IWALLHEESPRNTPFVSNKEFLRHFHFTSTFSRYSNLPLTTMYLPSGEAL TSKDYYVTFDGKSKYGYRPSTSVVFLQSDCDTMSGREDYVKELMKHLPID SYGSCLRNRDLPESLQKDYLNNLYSPELLRFLSEYKFMIAIENAACPDYI TEKFWRPLIMGVIPIYFGSPTIKDWEPNNKSAIFVNDFQNPQALVEYLNK LADNKKLYNSYRQHKLNRRNPISNKKLLHNLVTRQYHIGDSSPGASLFEK FECAVCYHVINTARNVKADLRHYNCPLEPVYAKMEGQKIPQNVADWRAAM EVGQCQAKVLDEFFRRDIGFNDAEFDAELNRRIEGNNCSNSSNT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22016-PA | 441 | GF22016-PA | 1..439 | 1..438 | 1601 | 64.7 | Plus |
Dana\GF23688-PA | 498 | GF23688-PA | 162..433 | 31..311 | 245 | 29.3 | Plus |
Dana\GF22153-PA | 459 | GF22153-PA | 137..410 | 59..324 | 180 | 23.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24028-PA | 443 | GG24028-PA | 1..443 | 1..444 | 2091 | 86.5 | Plus |
Dere\GG15882-PA | 503 | GG15882-PA | 164..435 | 31..311 | 228 | 29 | Plus |
Dere\GG17499-PA | 403 | GG17499-PA | 94..350 | 59..311 | 165 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13596-PA | 444 | GH13596-PA | 39..444 | 38..439 | 1269 | 57.6 | Plus |
Dgri\GH14528-PA | 502 | GH14528-PA | 166..437 | 31..311 | 247 | 29.7 | Plus |
Dgri\GH12859-PA | 395 | GH12859-PA | 84..357 | 59..322 | 175 | 25.1 | Plus |
Dgri\GH23360-PA | 319 | GH23360-PA | 26..270 | 60..315 | 159 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
FucTB-PD | 444 | CG4435-PD | 1..444 | 1..444 | 2399 | 100 | Plus |
FucTB-PA | 444 | CG4435-PA | 1..444 | 1..444 | 2399 | 100 | Plus |
FucTB-PC | 207 | CG4435-PC | 1..207 | 238..444 | 1117 | 100 | Plus |
FucTA-PB | 503 | CG6869-PB | 164..439 | 31..315 | 252 | 29.5 | Plus |
FucTA-PA | 503 | CG6869-PA | 164..439 | 31..315 | 252 | 29.5 | Plus |
FucTC-PB | 425 | CG40305-PB | 117..372 | 60..311 | 160 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10147-PA | 441 | GI10147-PA | 11..440 | 9..438 | 1240 | 53.1 | Plus |
Dmoj\GI13099-PA | 511 | GI13099-PA | 175..446 | 31..311 | 240 | 29.4 | Plus |
Dmoj\GI14950-PA | 398 | GI14950-PA | 88..351 | 60..314 | 167 | 23.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25635-PA | 641 | GL25635-PA | 271..638 | 75..442 | 1242 | 61.7 | Plus |
Dper\GL25635-PA | 641 | GL25635-PA | 1..274 | 1..273 | 915 | 61.3 | Plus |
Dper\GL25636-PA | 697 | GL25636-PA | 471..691 | 215..439 | 759 | 60 | Plus |
Dper\GL25636-PA | 697 | GL25636-PA | 1..213 | 1..212 | 624 | 54.5 | Plus |
Dper\GL24771-PA | 521 | GL24771-PA | 185..456 | 31..311 | 233 | 29 | Plus |
Dper\GL18621-PA | 443 | GL18621-PA | 236..375 | 165..311 | 194 | 36 | Plus |
Dper\GL16534-PA | 395 | GL16534-PA | 215..348 | 173..314 | 164 | 31.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\fut10B-PA | 641 | GA18182-PA | 271..638 | 75..442 | 1229 | 60.6 | Plus |
Dpse\fut10B-PA | 641 | GA18182-PA | 1..274 | 1..273 | 917 | 61.3 | Plus |
Dpse\fut10C-PA | 697 | GA25362-PA | 471..691 | 215..439 | 755 | 60.4 | Plus |
Dpse\fut10C-PA | 697 | GA25362-PA | 1..213 | 1..212 | 627 | 54.9 | Plus |
Dpse\GA19918-PA | 521 | GA19918-PA | 185..456 | 31..311 | 233 | 29 | Plus |
Dpse\GA25723-PA | 481 | GA25723-PA | 175..424 | 56..315 | 216 | 30.6 | Plus |
Dpse\GA25724-PA | 522 | GA25724-PA | 315..454 | 165..311 | 198 | 36.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12463-PA | 443 | GM12463-PA | 1..443 | 1..444 | 2275 | 93.9 | Plus |
Dsec\GM10051-PA | 332 | GM10051-PA | 21..279 | 57..311 | 163 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22356-PA | 443 | GD22356-PA | 1..443 | 1..444 | 2279 | 93.9 | Plus |
Dsim\GD14528-PA | 503 | GD14528-PA | 164..435 | 31..311 | 228 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18372-PA | 444 | GJ18372-PA | 7..444 | 5..441 | 1270 | 53.9 | Plus |
Dvir\GJ13846-PA | 524 | GJ13846-PA | 188..463 | 31..315 | 245 | 29.5 | Plus |
Dvir\GJ18920-PA | 395 | GJ18920-PA | 84..366 | 59..337 | 156 | 23.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24808-PA | 433 | GK24808-PA | 42..430 | 38..429 | 1275 | 59.8 | Plus |
Dwil\GK20401-PA | 549 | GK20401-PA | 211..486 | 31..315 | 240 | 28.9 | Plus |
Dwil\GK20026-PA | 408 | GK20026-PA | 221..348 | 173..311 | 168 | 34.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\fut10-PA | 443 | GE10522-PA | 1..442 | 1..443 | 2069 | 84.9 | Plus |
Dyak\GE22226-PA | 503 | GE22226-PA | 164..435 | 31..311 | 230 | 28.3 | Plus |
Dyak\GE15255-PA | 403 | GE15255-PA | 94..365 | 59..322 | 180 | 23.9 | Plus |
Translation from 99 to 1433
> LD16996.hyp MRLAQRYGIALVALLMVGATVLFFWSENIINYENIKFNSPVELVWWSRDM SWNYDVQRQCGIHTCRITNKRSRRPWARGVLFYGSNIKTGDFPLPRNEHQ IWALLHEESPRNTPFVSNKEFLRHFHFTSTFSRYSNLPLTTMYLPSGEAL TSKDYYVTFDGKSKYGYRPSTSVVFLQSDCDTMSGREDYVKELMKHLPID SYGSCLRNRDLPESLQKDYLNNLYSPELLRFLSEYKFMIAIENAACPDYI TEKFWRPLIMGVIPIYFGSPTIKDWEPNNKSAIFVNDFQNPQALVEYLNK LADNKKLYNSYRQHKLNRRNPISNKKLLHNLVTRQYHIGDSSPGASLFEK FECAVCYHVINTARNVKADLRHYNCPLEPVYAKMEGQKIPQNVADWRAAM EVGQCQAKVLDEFFRRDIGFNDAEFDAELNRRIEGNNCSNSSNT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
FucTB-PD | 444 | CG4435-PD | 1..444 | 1..444 | 2399 | 100 | Plus |
FucTB-PA | 444 | CG4435-PA | 1..444 | 1..444 | 2399 | 100 | Plus |
FucTB-PC | 207 | CG4435-PC | 1..207 | 238..444 | 1117 | 100 | Plus |
FucTA-PB | 503 | CG6869-PB | 164..439 | 31..315 | 252 | 29.5 | Plus |
FucTA-PA | 503 | CG6869-PA | 164..439 | 31..315 | 252 | 29.5 | Plus |