Clone LD17053 Report

Search the DGRC for LD17053

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:170
Well:53
Vector:pBS SK-
Associated Gene/TranscriptCG1227-RA
Protein status:LD17053.pep: gold
Preliminary Size:1554
Sequenced Size:1427

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1227 2001-01-01 Release 2 assignment
CG1227 2001-11-29 Blastp of sequenced clone
CG1227 2003-01-01 Sim4 clustering to Release 3
CG1227 2008-04-29 Release 5.5 accounting
CG1227 2008-08-15 Release 5.9 accounting
CG1227 2008-12-18 5.12 accounting

Clone Sequence Records

LD17053.complete Sequence

1427 bp (1427 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069451

> LD17053.complete
TGAAATTGCGATTATGCGATGACAGAATCTTGAATTCCTTTAATCTATAC
ACCAAGGAATCAAAATAAATATTAATTTATTAATACGTCAAGAAACTAAA
ATCGTAAAAATAATACGAAAGTGCCTAGTTTTTAAAGTTAAAGTTAATAT
AGAATCTTACAAATATGGTTAAAAATCACCGAACTTCATAAATTCGTTCC
AGTATAAACATTCCACTTCAGCTTTGTGTTTTCTATTTAGATTTTGTATG
TGAATTGAACTAGTTGTTAAGCTTAAAGTTGTGAAGTACATAGCATAATT
TAAGAAAAATGCAGAGTATAGGATGGACGCTGATCATGAAACGCGGCTGC
CTCTTTAGTTGCCGCAAGGAGACCCTGAACATAAACGGATCTCGATACAC
AATCCGCGAAAGGCTGGCGACGGGGGGCTTCAGTCTAATCGACCTTGGGG
AAAACGCCTCCACGCGACGTAGCTATGCGATAAAGCGCATCACCTGCCAC
AGCATCGATGATCAGAATATAGCTCTGCGAGAAATCGAAAACTGTCGAAA
AATTGACTCGGAAAACGTGATCCGGGTAGTGGATTACGAGCTGAAGGGCC
AGGCGGACATAGTTATAAACACAACGAGCACCTTGTTCATTGTGCTTCCC
TATTACAAGCACGGATCTCTTGCGGACCACCTTCAGCTGCGATCGCGGAA
ACAGGACCACATGCCCGAGGCCCAGATCCTGCAAATCTTTCTGGGCGTCT
GCGAGGGATTGAAGGCCATCCACGAGGCAATGCCGGTGCCTCTGGCCCAC
CGAGATCTAAAAACGGCCAACATCTGCCTGTCGGACTCTTTTGAGCCAAT
TATTGTGGATCTCGGGTCAATGACAGAAGCCCGACTGCAGATTGTGGGCC
AGACGGATGCTCAGCGCTTGCAGGACGAAGCCGAGGAGAGGAGCTCCATT
GTCTACCGGGCTCCAGAGTTATTTACCGTGAAAACATATTGCACAATTGA
CGAGCGCACTGACATATGGAGTCTTGGCTGTGTGCTCTATGCAATGTGCT
ACTTTAATTCACCCTACGATCCCATCTACGAGCGAGGTGACAGCGTGGCT
TTGGCTGTGCTCAGTGGGAACATAAACATTCCAGAGGATTCAATTTACAC
AGAGGACATGCACGAATTAATTAAGTACATGCTGCGAACAGATCCAATGG
AACGGCCATTCGTGTTTAGTGTTATCGAAAGGACCCACGATCTGATACAG
AAACTGGAGGGTCGCTTGTAGCTCCCACTAACTGGATTACAACTCATTTA
TAGACATTCCTCCAAACCAGATACACCGCTTACTGTTTTTTGACTACTTA
TTGTAAAATATTTTAAACCTGCTGATTTTATGAAATTATGTGTAAGCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA

LD17053.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1227-RA 1414 CG1227-RA 8..1406 1..1399 6995 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3074734..3075329 1019..424 2965 99.8 Minus
chr3R 27901430 chr3R 3075388..3075812 425..1 2125 100 Minus
chr3R 27901430 chr3R 3074243..3074487 1397..1153 1225 100 Minus
chr3R 27901430 chr3R 3074540..3074676 1155..1019 685 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:04:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7248650..7249245 1019..424 2980 100 Minus
3R 32079331 3R 7249304..7249728 425..1 2125 100 Minus
3R 32079331 3R 7248157..7248403 1399..1153 1235 100 Minus
3R 32079331 3R 7248456..7248592 1155..1019 685 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6989481..6990076 1019..424 2980 100 Minus
3R 31820162 3R 6990135..6990559 425..1 2125 100 Minus
3R 31820162 3R 6988988..6989234 1399..1153 1235 100 Minus
3R 31820162 3R 6989287..6989423 1155..1019 685 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:33:56 has no hits.

LD17053.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:34:47 Download gff for LD17053.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3074243..3074485 1155..1397 100 <- Minus
chr3R 3074541..3074675 1020..1154 100 <- Minus
chr3R 3074734..3075328 425..1019 99 <- Minus
chr3R 3075389..3075812 1..424 94   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:51:51 Download gff for LD17053.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 1..963 309..1271 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:23:12 Download gff for LD17053.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 1..963 309..1271 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:04:35 Download gff for LD17053.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 1..963 309..1271 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:49:47 Download gff for LD17053.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 1..963 309..1271 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:33:29 Download gff for LD17053.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 1..963 309..1271 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:58:12 Download gff for LD17053.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 8..1404 1..1397 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:23:11 Download gff for LD17053.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 8..1404 1..1397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:04:35 Download gff for LD17053.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 11..1407 1..1397 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:49:47 Download gff for LD17053.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 8..1404 1..1397 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:33:29 Download gff for LD17053.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 11..1407 1..1397 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:34:47 Download gff for LD17053.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7248159..7248401 1155..1397 100 <- Minus
3R 7248457..7248591 1020..1154 100 <- Minus
3R 7248650..7249244 425..1019 100 <- Minus
3R 7249305..7249728 1..424 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:34:47 Download gff for LD17053.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7248159..7248401 1155..1397 100 <- Minus
3R 7248457..7248591 1020..1154 100 <- Minus
3R 7248650..7249244 425..1019 100 <- Minus
3R 7249305..7249728 1..424 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:34:47 Download gff for LD17053.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7248159..7248401 1155..1397 100 <- Minus
3R 7248457..7248591 1020..1154 100 <- Minus
3R 7248650..7249244 425..1019 100 <- Minus
3R 7249305..7249728 1..424 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:04:35 Download gff for LD17053.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3073881..3074123 1155..1397 100 <- Minus
arm_3R 3074179..3074313 1020..1154 100 <- Minus
arm_3R 3074372..3074966 425..1019 100 <- Minus
arm_3R 3075027..3075450 1..424 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:26:13 Download gff for LD17053.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6988990..6989232 1155..1397 100 <- Minus
3R 6989288..6989422 1020..1154 100 <- Minus
3R 6989481..6990075 425..1019 100 <- Minus
3R 6990136..6990559 1..424 100   Minus

LD17053.pep Sequence

Translation from 308 to 1270

> LD17053.pep
MQSIGWTLIMKRGCLFSCRKETLNINGSRYTIRERLATGGFSLIDLGENA
STRRSYAIKRITCHSIDDQNIALREIENCRKIDSENVIRVVDYELKGQAD
IVINTTSTLFIVLPYYKHGSLADHLQLRSRKQDHMPEAQILQIFLGVCEG
LKAIHEAMPVPLAHRDLKTANICLSDSFEPIIVDLGSMTEARLQIVGQTD
AQRLQDEAEERSSIVYRAPELFTVKTYCTIDERTDIWSLGCVLYAMCYFN
SPYDPIYERGDSVALAVLSGNINIPEDSIYTEDMHELIKYMLRTDPMERP
FVFSVIERTHDLIQKLEGRL*

LD17053.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17312-PA 318 GF17312-PA 1..318 1..320 1629 94.7 Plus
Dana\GF14645-PA 1495 GF14645-PA 47..312 31..307 393 33.5 Plus
Dana\GF17690-PA 1197 GF17690-PA 53..330 21..308 269 26.4 Plus
Dana\GF21013-PA 581 GF21013-PA 26..282 28..315 220 27.5 Plus
Dana\GF21241-PA 732 GF21241-PA 23..294 30..318 206 25.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25282-PA 320 GG25282-PA 1..320 1..320 1698 98.8 Plus
Dere\GG21669-PA 1483 GG21669-PA 47..312 31..307 397 33.3 Plus
Dere\GG12187-PA 1174 GG12187-PA 41..317 21..307 257 24.7 Plus
Dere\GG12850-PA 582 GG12850-PA 26..282 28..315 219 27.5 Plus
Dere\GG17602-PA 740 GG17602-PA 19..292 30..320 202 24.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19283-PA 318 GH19283-PA 1..318 1..320 1555 90.3 Plus
Dgri\GH11600-PA 1580 GH11600-PA 21..315 17..315 370 31.5 Plus
Dgri\GH18708-PA 1207 GH18708-PA 51..326 23..308 271 27.7 Plus
Dgri\GH12117-PA 589 GH12117-PA 26..282 28..315 223 27.8 Plus
Dgri\GH24478-PA 726 GH24478-PA 26..292 30..316 215 26.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1227-PB 320 CG1227-PB 1..320 1..320 1657 100 Plus
CG1227-PA 320 CG1227-PA 1..320 1..320 1657 100 Plus
Nak-PC 698 CG10637-PC 47..312 31..307 379 33 Plus
Nak-PE 708 CG10637-PE 47..312 31..307 379 33 Plus
Nak-PD 1488 CG10637-PD 47..312 31..307 379 33 Plus
Nak-PA 1488 CG10637-PA 47..312 31..307 379 33 Plus
aux-PC 1153 CG1107-PC 41..317 21..307 255 24.7 Plus
aux-PB 1165 CG1107-PB 41..317 21..307 255 24.7 Plus
aux-PA 1165 CG1107-PA 41..317 21..307 255 24.7 Plus
aux-PD 1157 CG1107-PD 60..309 48..307 222 25 Plus
AMPKalpha-PC 582 CG3051-PC 28..282 30..315 221 27.3 Plus
AMPKalpha-PB 582 CG3051-PB 28..282 30..315 221 27.3 Plus
AMPKalpha-PA 582 CG3051-PA 28..282 30..315 221 27.3 Plus
Nek2-PA 735 CG17256-PA 19..291 30..319 204 24.6 Plus
par-1-PS 827 CG8201-PS 252..492 29..299 190 25.3 Plus
par-1-PW 832 CG8201-PW 252..492 29..299 190 25.3 Plus
par-1-PL 833 CG8201-PL 252..492 29..299 190 25.3 Plus
par-1-PA 938 CG8201-PA 252..492 29..299 190 25.3 Plus
par-1-PV 951 CG8201-PV 252..492 29..299 190 25.3 Plus
par-1-PH 993 CG8201-PH 375..615 29..299 190 25.3 Plus
par-1-PR 1046 CG8201-PR 480..720 29..299 190 25.3 Plus
par-1-PT 1058 CG8201-PT 480..720 29..299 190 25.3 Plus
par-1-PP 1141 CG8201-PP 480..720 29..299 190 25.3 Plus
par-1-PX 1170 CG8201-PX 252..492 29..299 190 25.3 Plus
Sik2-PA 1398 CG4290-PA 141..380 30..299 184 26.1 Plus
niki-PA 841 CG10951-PA 114..354 39..306 180 24.8 Plus
KP78b-PB 604 CG17216-PB 63..309 30..306 176 26.1 Plus
KP78b-PA 604 CG17216-PA 63..309 30..306 176 26.1 Plus
CG8485-PC 860 CG8485-PC 20..264 30..302 167 25.2 Plus
CG8485-PB 860 CG8485-PB 20..264 30..302 167 25.2 Plus
CG8485-PA 860 CG8485-PA 20..264 30..302 167 25.2 Plus
CG42366-PB 703 CG42366-PB 2..196 28..249 160 25.1 Plus
CG42366-PA 706 CG31711-PA 2..196 28..249 160 25.1 Plus
GckIII-PA 642 CG5169-PA 13..252 30..300 158 25.6 Plus
Atg1-PA 835 CG10967-PA 1..262 23..299 157 23.9 Plus
Atg1-PB 855 CG10967-PB 1..262 23..299 157 23.9 Plus
CG17698-PD 676 CG17698-PD 281..543 28..299 156 23.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23494-PA 318 GI23494-PA 1..318 1..320 1567 90 Plus
Dmoj\GI17169-PA 1521 GI17169-PA 21..307 17..307 372 32.6 Plus
Dmoj\GI22854-PA 1219 GI22854-PA 47..322 23..308 253 26.7 Plus
Dmoj\GI16329-PA 589 GI16329-PA 32..288 28..315 222 27.8 Plus
Dmoj\GI11217-PA 717 GI11217-PA 11..290 13..313 200 25.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12189-PA 318 GL12189-PA 1..318 1..320 1606 92.8 Plus
Dper\GL19623-PA 1534 GL19623-PA 46..311 31..307 377 32.6 Plus
Dper\GL12305-PA 1191 GL12305-PA 45..325 21..308 251 26.6 Plus
Dper\GL14583-PA 738 GL14583-PA 27..289 30..313 205 24.7 Plus
Dper\GL14247-PA 581 GL14247-PA 26..247 28..276 198 28.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11523-PA 318 GA11523-PA 1..318 1..320 1606 92.8 Plus
Dpse\GA10457-PA 1534 GA10457-PA 46..311 31..307 377 32.6 Plus
Dpse\GA10740-PA 1192 GA10740-PA 45..325 21..308 251 26.6 Plus
Dpse\GA15892-PA 587 GA15892-PA 26..282 28..315 219 27.5 Plus
Dpse\GA14417-PA 738 GA14417-PA 27..289 30..313 205 24.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10494-PA 320 GM10494-PA 1..320 1..320 1701 99.1 Plus
Dsec\GM17048-PA 1378 GM17048-PA 47..312 31..307 389 33 Plus
Dsec\GM10735-PA 1175 GM10735-PA 43..317 23..307 249 25.3 Plus
Dsec\GM11966-PA 740 GM11966-PA 19..292 30..320 204 25.2 Plus
Dsec\GM19132-PA 565 GM19132-PA 26..268 28..299 202 27.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19491-PA 320 GD19491-PA 1..320 1..320 1706 99.7 Plus
Dsim\GD21795-PA 1516 GD21795-PA 47..312 31..307 389 33 Plus
Dsim\GD19706-PA 1175 GD19706-PA 41..317 21..307 247 24.7 Plus
Dsim\GD16554-PA 582 GD16554-PA 26..282 28..315 219 27.5 Plus
Dsim\GD20665-PA 603 GD20665-PA 55..261 23..254 173 28 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10245-PA 318 GJ10245-PA 1..318 1..320 1579 91.2 Plus
Dvir\GJ17674-PA 1515 GJ17674-PA 21..315 17..315 370 31.5 Plus
Dvir\GJ14155-PA 1212 GJ14155-PA 56..331 23..308 272 28 Plus
Dvir\GJ16859-PA 718 GJ16859-PA 33..295 30..313 210 27 Plus
Dvir\GJ15670-PA 568 GJ15670-PA 26..257 28..315 191 27.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11088-PA 318 GK11088-PA 1..318 1..320 1556 89.4 Plus
Dwil\GK24682-PA 1553 GK24682-PA 46..311 31..307 375 33.6 Plus
Dwil\GK12070-PA 1191 GK12070-PA 44..322 21..308 249 24.2 Plus
Dwil\GK16296-PA 592 GK16296-PA 29..285 28..315 219 27.5 Plus
Dwil\GK10114-PA 708 GK10114-PA 95..300 101..318 200 28.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25802-PA 320 GE25802-PA 1..320 1..320 1690 98.1 Plus
Dyak\GE11119-PA 320 GE11119-PA 1..320 1..320 1688 98.1 Plus
Dyak\GE12690-PA 1479 GE12690-PA 47..312 31..307 395 33.3 Plus
Dyak\auxillin-PA 1170 GE25395-PA 42..316 23..307 255 25.1 Plus
Dyak\GE16684-PA 582 GE16684-PA 26..282 28..315 219 27.5 Plus

LD17053.hyp Sequence

Translation from 308 to 1270

> LD17053.hyp
MQSIGWTLIMKRGCLFSCRKETLNINGSRYTIRERLATGGFSLIDLGENA
STRRSYAIKRITCHSIDDQNIALREIENCRKIDSENVIRVVDYELKGQAD
IVINTTSTLFIVLPYYKHGSLADHLQLRSRKQDHMPEAQILQIFLGVCEG
LKAIHEAMPVPLAHRDLKTANICLSDSFEPIIVDLGSMTEARLQIVGQTD
AQRLQDEAEERSSIVYRAPELFTVKTYCTIDERTDIWSLGCVLYAMCYFN
SPYDPIYERGDSVALAVLSGNINIPEDSIYTEDMHELIKYMLRTDPMERP
FVFSVIERTHDLIQKLEGRL*

LD17053.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1227-PB 320 CG1227-PB 1..320 1..320 1657 100 Plus
CG1227-PA 320 CG1227-PA 1..320 1..320 1657 100 Plus
Nak-PC 698 CG10637-PC 47..312 31..307 379 33 Plus
Nak-PE 708 CG10637-PE 47..312 31..307 379 33 Plus
Nak-PD 1488 CG10637-PD 47..312 31..307 379 33 Plus