Clone LD17077 Report

Search the DGRC for LD17077

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:170
Well:77
Vector:pBS SK-
Associated Gene/TranscriptCG3876-RA
Protein status:LD17077.pep: gold
Preliminary Size:1478
Sequenced Size:1356

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3876 2001-01-01 Release 2 assignment
CG3876 2002-06-10 Blastp of sequenced clone
CG3876 2008-04-29 Release 5.5 accounting
CG3876 2008-08-15 Release 5.9 accounting
CG3876 2008-12-18 5.12 accounting

Clone Sequence Records

LD17077.complete Sequence

1356 bp (1356 high quality bases) assembled on 2002-06-10

GenBank Submission: AY121646

> LD17077.complete
TCGCAATGTTTATAACGTAAGCAATCTGCGTGAAAAGCCATTAGTTAATT
TGGGAGCGAGGAACTGAAAAATGAGGAGCGAGCGCCGCTGAAGAACCCAA
CCCGACCAACACCCCACGTAGTCCACCCACTCCAAAGGTCAAATGCTGCC
TACTTACGAGCGCTTCAGTGATCCCAAAAGCGTCCTCTTCCGGCTTCCCT
TTGCGCGACTGGCACTGGTGGCTCTTAGTTTGCCCCTGGGAGGCTTCTTC
TTCTGCGTGATTTGGTCTCTGACCTTTGACTTCGTTAGGAGCACCTACAC
CCACTGCGATGTGACCAACTATCTGCCCTCCGTCTCGGCGGCCATTGGGA
ACTATGAGCCCCAAAAAACCGTCTGGAGACTGGCCATATTTCTGCATTTA
CCACTCCGTTTGGCAGTTGCCAAAATCTACTTGGAGCACTATCGGGAACA
CATCCGCCGGAGCAGAAGATTGCTGGGCATCCTGGCCTGCTTCTTGAACG
TCGTGGAGGATCTGGCCCTCTTCTGCTTGTCGTTTTGGACCTCTGCGGAT
CATTACGAGACCCACAGAAACGCATTTGTGGTGTTCATTGCGTGTTCCGA
GTGCTATATGCTGGTTTCCTACCTGCTGAACAGGAATATACAGAAGACCG
TGCTCTTGCCGCACGAGGAGAAGTCGCTGAGGTACAAGAGAAATCTGTTC
TTGGTGAATGTGATCGCCTTTGGCTTGGCAGGATACTGCTTCGTGAGGCA
CAACTCGCATTGCGAGGCGGGAGTCTATACTTTCTTCGCGTTGTTCGAGT
ACATCGTGGTGCTGACCAACATGGGGTTCCACATGACCTCCTACTGGGAC
TTCTACGCCCTGAATGTGGTGTGTGATGCCAAGCACGGTCTCTACCTATC
ACAATCGTAGACCAATGAACTAGATCAAACCCAGCCTGCGCCGCCATTTC
AGCCAGCCAGTCGTCCTCGAGTATTGTGTACATACGCGGTATTAGCTTAA
GCTCAATGTTTACTTAATTTTACCAAAAGGAAATTGCTTACGAGGGATTC
CGAGAGGAGACGATTCAGTATGACAGGATCTGATGCATACACACGCTTTT
AGCTTTAGGCTCTAACACGATTTTACACCTAAAGGATCTAGTTAAATTCG
AACCGAGTTCCATCATTATGTAGTGCATTATTTATACACATACTCATTTA
GGAACAAGGCTTCAATAAGGTTTTATTTTATACGTACTGAATTTGCTTTT
ATTGGCTTCTAATGTTCTAATTCATTATTTTGTAAGTCTAAAATTGTATT
TATTAGAATTCAGATAAATTAACTTTTTAATTGCTTCCAAAAAAAAAAAA
AAAAAA

LD17077.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3876-RA 1360 CG3876-RA 23..1360 1..1338 6690 100 Plus
CG15880-RA 1431 CG15880-RA 1..461 880..1340 2305 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 818575..819347 773..1 3790 99.4 Minus
chr2L 23010047 chr2L 817950..818516 1338..772 2790 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:04:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 818704..819476 773..1 3865 100 Minus
2L 23513712 2L 818077..818645 1340..772 2845 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 818704..819476 773..1 3865 100 Minus
2L 23513712 2L 818077..818645 1340..772 2845 100 Minus
Blast to na_te.dros performed 2019-03-15 18:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 3889..3966 1303..1226 111 60.3 Minus

LD17077.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:25:37 Download gff for LD17077.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 818575..819347 1..773 99   Minus
chr2L 817950..818514 774..1338 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:51:52 Download gff for LD17077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 1..768 143..910 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:51:09 Download gff for LD17077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 1..768 143..910 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:02:14 Download gff for LD17077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 1..768 143..910 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:33:23 Download gff for LD17077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 1..768 143..910 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:33 Download gff for LD17077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 1..768 143..910 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:02:18 Download gff for LD17077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 17..1354 1..1338 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:51:09 Download gff for LD17077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 17..1354 1..1338 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:02:14 Download gff for LD17077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 33..1370 1..1338 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:33:23 Download gff for LD17077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 17..1354 1..1338 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:33 Download gff for LD17077.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 33..1370 1..1338 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:37 Download gff for LD17077.complete
Subject Subject Range Query Range Percent Splice Strand
2L 818079..818643 774..1338 100 <- Minus
2L 818704..819476 1..773 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:37 Download gff for LD17077.complete
Subject Subject Range Query Range Percent Splice Strand
2L 818079..818643 774..1338 100 <- Minus
2L 818704..819476 1..773 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:37 Download gff for LD17077.complete
Subject Subject Range Query Range Percent Splice Strand
2L 818079..818643 774..1338 100 <- Minus
2L 818704..819476 1..773 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:02:14 Download gff for LD17077.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 818079..818643 774..1338 100 <- Minus
arm_2L 818704..819476 1..773 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:14:08 Download gff for LD17077.complete
Subject Subject Range Query Range Percent Splice Strand
2L 818079..818643 774..1338 100 <- Minus
2L 818704..819476 1..773 100   Minus

LD17077.pep Sequence

Translation from 142 to 909

> LD17077.pep
MLPTYERFSDPKSVLFRLPFARLALVALSLPLGGFFFCVIWSLTFDFVRS
TYTHCDVTNYLPSVSAAIGNYEPQKTVWRLAIFLHLPLRLAVAKIYLEHY
REHIRRSRRLLGILACFLNVVEDLALFCLSFWTSADHYETHRNAFVVFIA
CSECYMLVSYLLNRNIQKTVLLPHEEKSLRYKRNLFLVNVIAFGLAGYCF
VRHNSHCEAGVYTFFALFEYIVVLTNMGFHMTSYWDFYALNVVCDAKHGL
YLSQS*

LD17077.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14823-PA 255 GF14823-PA 1..254 1..254 1276 93.3 Plus
Dana\GF16001-PA 355 GF16001-PA 94..329 9..237 316 31.9 Plus
Dana\GF14824-PA 261 GF14824-PA 55..260 46..254 193 30.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24627-PA 255 GG24627-PA 1..255 1..255 1333 98 Plus
Dere\GG18072-PA 325 GG18072-PA 75..299 20..237 314 33.5 Plus
Dere\GG24628-PA 255 GG24628-PA 53..254 52..254 148 27 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10495-PA 255 GH10495-PA 1..254 1..254 1147 82.3 Plus
Dgri\GH12034-PA 345 GH12034-PA 95..319 20..237 310 32.6 Plus
Dgri\GH10496-PA 217 GH10496-PA 23..212 16..207 189 30.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
PGAP2-PA 255 CG3876-PA 1..255 1..255 1360 100 Plus
CG7990-PA 325 CG7990-PA 75..299 20..237 336 33.5 Plus
CG15880-PA 263 CG15880-PA 25..262 16..254 214 28.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18012-PA 255 GI18012-PA 1..254 1..254 1083 76.8 Plus
Dmoj\GI14309-PA 312 GI14309-PA 51..286 9..237 310 31.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18632-PA 255 GL18632-PA 1..254 1..254 1197 91.7 Plus
Dper\GL13016-PA 349 GL13016-PA 99..323 20..237 296 30.8 Plus
Dper\GL18633-PA 258 GL18633-PA 7..257 2..254 161 23.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17744-PA 255 GA17744-PA 1..254 1..254 1197 91.7 Plus
Dpse\GA25860-PA 347 GA25860-PA 97..321 20..237 293 30.4 Plus
Dpse\GA14001-PA 258 GA14001-PA 7..257 2..254 160 23.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16642-PA 255 GM16642-PA 1..255 1..255 1330 98.4 Plus
Dsec\GM22761-PA 350 GM22761-PA 100..324 20..237 316 33.5 Plus
Dsec\GM16644-PA 262 GM16644-PA 32..261 23..254 186 28.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22939-PA 255 GD22939-PA 1..255 1..255 1340 99.2 Plus
Dsim\GD15597-PA 325 GD15597-PA 75..299 20..237 316 33.5 Plus
Dsim\GD22940-PA 261 GD22940-PA 31..260 23..254 185 28.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19643-PA 255 GJ19643-PA 1..255 1..255 1117 79.2 Plus
Dvir\GJ19365-PA 341 GJ19365-PA 81..315 10..237 306 32.4 Plus
Dvir\GJ19646-PA 253 GJ19646-PA 20..253 16..255 208 29.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24413-PA 256 GK24413-PA 1..255 1..254 1084 82 Plus
Dwil\GK25756-PA 377 GK25756-PA 116..351 9..237 316 31.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15909-PA 255 GE15909-PA 1..255 1..255 1326 97.6 Plus
Dyak\GE15469-PA 348 GE15469-PA 98..322 20..237 318 33.5 Plus
Dyak\GE15920-PA 263 GE15920-PA 25..262 16..254 188 27.9 Plus

LD17077.hyp Sequence

Translation from 142 to 909

> LD17077.hyp
MLPTYERFSDPKSVLFRLPFARLALVALSLPLGGFFFCVIWSLTFDFVRS
TYTHCDVTNYLPSVSAAIGNYEPQKTVWRLAIFLHLPLRLAVAKIYLEHY
REHIRRSRRLLGILACFLNVVEDLALFCLSFWTSADHYETHRNAFVVFIA
CSECYMLVSYLLNRNIQKTVLLPHEEKSLRYKRNLFLVNVIAFGLAGYCF
VRHNSHCEAGVYTFFALFEYIVVLTNMGFHMTSYWDFYALNVVCDAKHGL
YLSQS*

LD17077.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3876-PA 255 CG3876-PA 1..255 1..255 1360 100 Plus
CG7990-PA 325 CG7990-PA 75..299 20..237 336 33.5 Plus
CG15880-PA 263 CG15880-PA 25..262 16..254 214 28.8 Plus