Clone LD17340 Report

Search the DGRC for LD17340

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:173
Well:40
Vector:pBS SK-
Associated Gene/Transcriptfrj-RA
Protein status:LD17340.pep: gold
Preliminary Size:2282
Sequenced Size:2089

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9526 2001-01-01 Release 2 assignment
CG9526 2002-12-11 Blastp of sequenced clone
CG9526 2003-01-01 Sim4 clustering to Release 3
CG9526 2008-04-29 Release 5.5 accounting
CG9526 2008-08-15 Release 5.9 accounting
CG9526 2008-12-18 5.12 accounting

Clone Sequence Records

LD17340.complete Sequence

2089 bp (2089 high quality bases) assembled on 2002-12-11

GenBank Submission: BT003271

> LD17340.complete
GGACTTAAATTGTATCTTTGTTAAATTTATTAGATATAAACAATAAATAA
TATCGCGAAAATACCGTTAAGCGATAGGTGACCGTCATAGGAGTGGCAAC
ACTGGCTGCACTGCCTCTGCGGAGCGGATAAAACAAATCAAAAATCAATA
GCCGGGGGATCGAGTACCCACTGCAGGATGAGCATCGACGACGTCATCTA
TGTGATCTGCCTGCTGGGCTGCATCGGAGCCGGCAGCTATGTGAAGAAGA
TCGCGGACGAGGGCCAGCGCAAGCTGGTGTCCACTGGGCTAGGCGTTCTT
GTGGTTGTCATTGTCTCGGGGCTCCACAGTCTGCACTGCTTTGTTTCCCT
GGCACTGGGCACGGCCGCCGTGCTTCTCGTGCACCCGAGCAAGGGTCACC
TGGTCACGTTTGCGGTCATGTTTGGCTACCTGGTGTTCTTCCGCATTTTC
GACTTCTACTTCGGCATTCCCGGCCACACGAACATGATACAAATGATACT
AACACTAAAGGTTTCGGGCATTGCCTTCGAGAAGACTGCCGCCTGGAAGC
GACTGCAAGCGCACGACGAGCAAAAGAAGAACGACCAGCGGGATGTGCAC
CAGGAGAGTCCAATCGAGATCACCGACTACGATGTGGAATTGCAGAGCCT
GAGTGCCGCTGAGATCCTGCACTACAGCTTCAACTACATCGGAGTTCTTA
CAGGTCCCTATTATCGGTATCGCACATACAGGGACTACTTTGAGATGCCT
TTCAAGACCTACGCTCCAACTGTTGAAGCCACCCTGGAGAAGCTGAAGTA
CGCCGTCTTCTACTGCGCATTATACCTGGCAACCAACTACATGTGGCCAC
TGGATTATGCGTTGAGTGATGAGTTCTTCAACGATCGCTCCTTTGTGTAC
CGTTTGCTGTACGTGTGGCCCACGTTCTTCACATTCCGCGCTCGCATCTA
CACCGGACTCACCCTCAGCGAATGTGTCTGCACAATGGCCGGCTTCGGAG
CCTATCCGGATGAATCCGATCCCAACAATGGCGAGGGCCCTCGGAAACGC
TATCAGCACCTAAAGCGCGACGCCGATAAGCACACCTACAACTTTACAAC
GATCGTGAACACCAGGGTTCTGGAGGTGGAAAGATGCTGGACCTTCCGCG
AGGGCATGAAGCACTGGAATGTGTGCGTCCAGTATTGGTTGGCTGTCAAT
GTGTACAAACTCTTCCCCAGCAAAAAGTACAGGACTGGCGCCACTTTGCT
GTGCTCTGCCTACTGGCACGGATTCCGGCCGGGACACTACTTCTGCATCA
TGGGCGCTCCCTTCTACGTCTCCCTGGAGGACATGTGGGATAAGCTGGTG
CGCAAGAGTGCCACCGGCACCAGCCGCAGGGTAATCGATGTCATCTTCTG
GATCTTTAAGTGGTTCGCCTTCAGCTACTTGGGCGAGGCCTTCCTGCTCT
CCTCCTTTGGCAACATCTGGCGGTTCTATAGCTCTGTCTATCATATTGGC
TACATCAGTTGGGCGGCCATGACTGCGTTAGGCTTTTACCTCACCAGCCA
GAGAAAAGCGGCCGAACGTAGAAAGAAGCGCGCGGCAGAGAAAGCAGCTG
GTGGCGACGGAATCGCCGCCGCAATAGAGAAGGAGAAGGCGCAGTAGAGT
GTCCAGTTTGTTGCTACCAAATGGGTAGTTTCCATTCAAAACACAACTTC
CTTTAAGTTTTCCAATAGATATTCTATTAGGGGGAAACCGAAAATTTCTT
CCTTGAAATTGTATATTATGATGATCAAACGAATTTCTTCTTAGAGATGT
TCTTCTCTACATAAGTCACCATTTTAATTATGTACAAAGTGGTCTTGTTA
CGCCTTCTACCCGCTTCCATCCGCACTTCTTCTGGGGAAGGTGATGATAT
TGATATGGATAAAATCTAAAATTAGATGCTAAAAAGTTACTAAAGAAATT
TTATTATAGATATACATATATTTTAACCAAAGCCTGTGAAATTGGAGTCA
AAAGTTATAGAAATATAAAATCCCAATATGATCATTCAATTGAAAACTAT
AATATAAAAGGAAATACACTAAAAAAAAAAAAAAAAAAA

LD17340.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9526-RA 2133 CG9526-RA 28..2100 1..2073 10365 100 Plus
CG9526.a 2211 CG9526.a 174..2211 33..2070 10190 100 Plus
CG9526-RB 2102 CG9526-RB 103..2102 71..2070 10000 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6457141..6457980 1231..2070 4170 99.8 Plus
chr2L 23010047 chr2L 6455266..6455654 1..389 1945 100 Plus
chr2L 23010047 chr2L 6456512..6456889 856..1233 1890 100 Plus
chr2L 23010047 chr2L 6455891..6456087 509..705 970 99.5 Plus
chr2L 23010047 chr2L 6456307..6456461 701..855 775 100 Plus
chr2L 23010047 chr2L 6455714..6455838 388..512 625 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:04:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6458169..6459011 1231..2073 4215 100 Plus
2L 23513712 2L 6456294..6456682 1..389 1945 100 Plus
2L 23513712 2L 6457540..6457917 856..1233 1890 100 Plus
2L 23513712 2L 6456919..6457115 509..705 985 100 Plus
2L 23513712 2L 6457335..6457489 701..855 775 100 Plus
2L 23513712 2L 6456742..6456866 388..512 625 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6458169..6459011 1231..2073 4215 100 Plus
2L 23513712 2L 6456294..6456682 1..389 1945 100 Plus
2L 23513712 2L 6457540..6457917 856..1233 1890 100 Plus
2L 23513712 2L 6456919..6457115 509..705 985 100 Plus
2L 23513712 2L 6457335..6457489 701..855 775 100 Plus
2L 23513712 2L 6456742..6456866 388..512 625 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:22:42 has no hits.

LD17340.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:23:52 Download gff for LD17340.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6455266..6455654 1..389 100 -> Plus
chr2L 6455716..6455836 390..510 100 -> Plus
chr2L 6455893..6456085 511..703 99 -> Plus
chr2L 6456310..6456461 704..855 100 -> Plus
chr2L 6456512..6456888 856..1232 100 -> Plus
chr2L 6457143..6457980 1233..2070 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:52:09 Download gff for LD17340.complete
Subject Subject Range Query Range Percent Splice Strand
CG9526-RA 1..1470 178..1647 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:59:52 Download gff for LD17340.complete
Subject Subject Range Query Range Percent Splice Strand
frj-RA 1..1470 178..1647 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:41 Download gff for LD17340.complete
Subject Subject Range Query Range Percent Splice Strand
frj-RB 1..1470 178..1647 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:50:27 Download gff for LD17340.complete
Subject Subject Range Query Range Percent Splice Strand
CG9526-RA 1..1470 178..1647 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:01 Download gff for LD17340.complete
Subject Subject Range Query Range Percent Splice Strand
frj-RB 1..1470 178..1647 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:16:55 Download gff for LD17340.complete
Subject Subject Range Query Range Percent Splice Strand
CG9526-RA 1..2070 1..2070 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:59:52 Download gff for LD17340.complete
Subject Subject Range Query Range Percent Splice Strand
frj-RA 1..2070 1..2070 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:41 Download gff for LD17340.complete
Subject Subject Range Query Range Percent Splice Strand
frj-RA 28..2097 1..2070 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:50:28 Download gff for LD17340.complete
Subject Subject Range Query Range Percent Splice Strand
CG9526-RA 1..2070 1..2070 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:01 Download gff for LD17340.complete
Subject Subject Range Query Range Percent Splice Strand
frj-RA 28..2097 1..2070 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:23:52 Download gff for LD17340.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6457338..6457489 704..855 100 -> Plus
2L 6456744..6456864 390..510 100 -> Plus
2L 6456921..6457113 511..703 100 -> Plus
2L 6456294..6456682 1..389 100 -> Plus
2L 6457540..6457916 856..1232 100 -> Plus
2L 6458171..6459008 1233..2070 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:23:52 Download gff for LD17340.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6457338..6457489 704..855 100 -> Plus
2L 6456744..6456864 390..510 100 -> Plus
2L 6456921..6457113 511..703 100 -> Plus
2L 6456294..6456682 1..389 100 -> Plus
2L 6457540..6457916 856..1232 100 -> Plus
2L 6458171..6459008 1233..2070 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:23:52 Download gff for LD17340.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6457338..6457489 704..855 100 -> Plus
2L 6456744..6456864 390..510 100 -> Plus
2L 6456921..6457113 511..703 100 -> Plus
2L 6456294..6456682 1..389 100 -> Plus
2L 6457540..6457916 856..1232 100 -> Plus
2L 6458171..6459008 1233..2070 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:41 Download gff for LD17340.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6457338..6457489 704..855 100 -> Plus
arm_2L 6457540..6457916 856..1232 100 -> Plus
arm_2L 6456294..6456682 1..389 100 -> Plus
arm_2L 6456744..6456864 390..510 100 -> Plus
arm_2L 6456921..6457113 511..703 100 -> Plus
arm_2L 6458171..6459008 1233..2070 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:22:12 Download gff for LD17340.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6457540..6457916 856..1232 100 -> Plus
2L 6456294..6456682 1..389 100 -> Plus
2L 6456744..6456864 390..510 100 -> Plus
2L 6456921..6457113 511..703 100 -> Plus
2L 6457338..6457489 704..855 100 -> Plus
2L 6458171..6459008 1233..2070 100   Plus

LD17340.pep Sequence

Translation from 177 to 1646

> LD17340.pep
MSIDDVIYVICLLGCIGAGSYVKKIADEGQRKLVSTGLGVLVVVIVSGLH
SLHCFVSLALGTAAVLLVHPSKGHLVTFAVMFGYLVFFRIFDFYFGIPGH
TNMIQMILTLKVSGIAFEKTAAWKRLQAHDEQKKNDQRDVHQESPIEITD
YDVELQSLSAAEILHYSFNYIGVLTGPYYRYRTYRDYFEMPFKTYAPTVE
ATLEKLKYAVFYCALYLATNYMWPLDYALSDEFFNDRSFVYRLLYVWPTF
FTFRARIYTGLTLSECVCTMAGFGAYPDESDPNNGEGPRKRYQHLKRDAD
KHTYNFTTIVNTRVLEVERCWTFREGMKHWNVCVQYWLAVNVYKLFPSKK
YRTGATLLCSAYWHGFRPGHYFCIMGAPFYVSLEDMWDKLVRKSATGTSR
RVIDVIFWIFKWFAFSYLGEAFLLSSFGNIWRFYSSVYHIGYISWAAMTA
LGFYLTSQRKAAERRKKRAAEKAAGGDGIAAAIEKEKAQ*

LD17340.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21527-PA 489 GF21527-PA 1..489 1..489 2308 89.6 Plus
Dana\GF12916-PA 745 GF12916-PA 141..504 106..488 201 22.8 Plus
Dana\GF10775-PA 499 GF10775-PA 130..476 102..466 157 22 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10412-PA 485 GG10412-PA 1..485 1..489 2345 90 Plus
Dere\GG25239-PA 1171 GG25239-PA 592..918 106..444 173 23.4 Plus
Dere\GG13418-PA 497 GG13418-PA 51..476 25..467 164 21.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10461-PA 489 GH10461-PA 1..489 1..489 2015 76 Plus
Dgri\GH21285-PA 747 GH21285-PA 141..490 106..475 202 22.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
frj-PA 489 CG9526-PA 1..489 1..489 2622 100 Plus
frj-PB 489 CG9526-PB 1..489 1..489 2622 100 Plus
oys-PE 722 CG18445-PE 28..511 1..488 218 20.5 Plus
oys-PB 722 CG18445-PB 28..511 1..488 218 20.5 Plus
oys-PA 722 CG18445-PA 28..511 1..488 218 20.5 Plus
oys-PD 702 CG18445-PD 121..491 106..488 212 22.2 Plus
nes-PC 497 CG9655-PC 47..476 21..467 188 21.2 Plus
nes-PB 497 CG9655-PB 47..476 21..467 188 21.2 Plus
nes-PA 497 CG9655-PA 47..476 21..467 188 21.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17715-PA 489 GI17715-PA 1..489 1..489 1920 72.8 Plus
Dmoj\GI19773-PA 1376 GI19773-PA 784..1137 106..477 198 22.8 Plus
Dmoj\GI13549-PA 474 GI13549-PA 70..388 57..404 151 23 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25669-PA 435 GL25669-PA 1..423 1..422 1940 87.5 Plus
Dper\GL10561-PA 728 GL10561-PA 141..494 106..476 202 22.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21856-PA 485 GA21856-PA 1..485 1..489 2187 85.7 Plus
Dpse\GA25383-PA 170 GA25383-PA 1..170 315..489 800 85.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18630-PA 489 GM18630-PA 1..489 1..489 2598 98.4 Plus
Dsec\GM20559-PA 691 GM20559-PA 111..481 106..488 201 22.2 Plus
Dsec\GM14886-PA 496 GM14886-PA 47..491 21..489 163 20.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23410-PA 489 GD23410-PA 1..489 1..489 2603 98.4 Plus
Dsim\GD26012-PA 1026 GD26012-PA 141..511 106..488 200 22.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11517-PA 489 GJ11517-PA 1..489 1..489 2011 78.3 Plus
Dvir\GJ17620-PA 744 GJ17620-PA 28..485 1..470 195 21.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18722-PA 488 GK18722-PA 1..488 1..489 2173 82.2 Plus
Dwil\GK21363-PA 715 GK21363-PA 28..467 1..444 188 21.5 Plus
Dwil\GK19695-PA 514 GK19695-PA 136..503 103..487 181 23.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13879-PA 489 GE13879-PA 1..489 1..489 2441 95.3 Plus
Dyak\GE21852-PA 721 GE21852-PA 141..511 106..488 200 22.2 Plus
Dyak\GE22919-PA 497 GE22919-PA 47..476 21..467 159 20.6 Plus
Dyak\GE22515-PA 497 GE22515-PA 47..476 21..467 159 20.6 Plus

LD17340.hyp Sequence

Translation from 177 to 1646

> LD17340.hyp
MSIDDVIYVICLLGCIGAGSYVKKIADEGQRKLVSTGLGVLVVVIVSGLH
SLHCFVSLALGTAAVLLVHPSKGHLVTFAVMFGYLVFFRIFDFYFGIPGH
TNMIQMILTLKVSGIAFEKTAAWKRLQAHDEQKKNDQRDVHQESPIEITD
YDVELQSLSAAEILHYSFNYIGVLTGPYYRYRTYRDYFEMPFKTYAPTVE
ATLEKLKYAVFYCALYLATNYMWPLDYALSDEFFNDRSFVYRLLYVWPTF
FTFRARIYTGLTLSECVCTMAGFGAYPDESDPNNGEGPRKRYQHLKRDAD
KHTYNFTTIVNTRVLEVERCWTFREGMKHWNVCVQYWLAVNVYKLFPSKK
YRTGATLLCSAYWHGFRPGHYFCIMGAPFYVSLEDMWDKLVRKSATGTSR
RVIDVIFWIFKWFAFSYLGEAFLLSSFGNIWRFYSSVYHIGYISWAAMTA
LGFYLTSQRKAAERRKKRAAEKAAGGDGIAAAIEKEKAQ*

LD17340.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
frj-PA 489 CG9526-PA 1..489 1..489 2622 100 Plus
frj-PB 489 CG9526-PB 1..489 1..489 2622 100 Plus
oys-PE 722 CG18445-PE 28..511 1..488 218 20.5 Plus
oys-PB 722 CG18445-PB 28..511 1..488 218 20.5 Plus
oys-PA 722 CG18445-PA 28..511 1..488 218 20.5 Plus