Clone LD17530 Report

Search the DGRC for LD17530

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:175
Well:30
Vector:pBS SK-
Associated Gene/TranscriptRpn9-RA
Protein status:LD17530.pep: gold
Preliminary Size:1554
Sequenced Size:1342

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10230 2001-01-01 Release 2 assignment
CG10230 2001-10-10 Blastp of sequenced clone
CG10230 2003-01-01 Sim4 clustering to Release 3
Rpn9 2008-04-29 Release 5.5 accounting
Rpn9 2008-08-15 Release 5.9 accounting
Rpn9 2008-12-18 5.12 accounting

Clone Sequence Records

LD17530.complete Sequence

1342 bp (1342 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061232

> LD17530.complete
CTGCGTCGGCGATTGTGATTTGCAATTTTTGTAGTTTGGGAATACATTAA
ACATTACATTTGAAATTAATTCAACACAAAGCGCAGTTGCGATGTCCAAT
CCTCAGCCTAATGTCACCGCCTATCTGGCGACCCAGAAGAAGACCACCAA
CAAAGAACTCGCCGCCGAATGGACGCTCATCGAGGAGCTCTACAATGAAA
AACTCTGGAATGAGCTGACCATCAAACTGGTGACCTTTGTGCGCCACGAA
TCCTTGCAGGACGAAACTGCGCTGCTGCAGCTCTACCAGAATTTCCTGTC
CACCTTCGAGACCAAAATAAACCCCTATGGCCTCATCCAGATTCTCGAGG
TGGTGGTTGACAACATCGGTGACAAGAAGGAGGCCATCGAGTTCTTGGAG
AAGATGAAGGACAAGGTGAAGATCTGCGACGAGGCCGTTTGGTATCTGCA
GGTGATGCAGGGTAATCTGTACCTCAGCAACCTGAACGATCTGAATGCCA
CCAAGAAGATCATCGAGGAACTGCGTGATGTCCTAGAGGAAGCGGGTAAT
GTGACGCCCGTTCACGGCAAATACTACATGCTGGCATCCCAGTATTATCG
GCGAGTGGGCAAGCACAGCGATTACTACCGATGTGGCCTACAGTTTCTGG
GCTGCTCCATGGATGAGTACCCCCGTGATCAATGGGCCCAGCAGGCATTC
TTCTTGGGTCTGGCTGCTCTCTTGGGCGATGGTGTCTACAACATAGGCGA
ATTGCTGGCTCATCCCATTCTTGAGTCGCTTAAGGGCACGGAAAATGAGT
GGCTCATGGAACTTCTTAAAGCCTTCAACACGGGCGATATTAACAAGTTT
AATGACATGAAGAAAATCTGGTCCAAGATTCCCGATTTGGCTGCCCAGGA
GGTCAAGTTGCGCCAGAAGATCTCCCTCCTTTGCCTCATGGAGATGACCT
TCAAGCGCTCAGCCATCGAGCGAGCCATCTCCTTTACCGACATCGCGCAA
GAGACCAAACTGCCCGCCAAGGAAGTGGAACTGCTTATCATGAAGGCTCT
GGCTTTGGATCTCGTCCGCGGCGAGATTGACCAAGTGGCTGGAGTGGTTA
ACATGTCGTGGGTGCAACCACGCGTCCTCAACCGCAGCCAGATTGTCGGC
ATGGCCAGCACTCTGGACACATGGATGGGCGCCATCACGAACATGGAGAA
ACTGATGGAGAATCGTGCCGCCGAAATCCTCACCAATTAGTTTTAGTTTC
GCCTGATCTAGACGATCCCACATATTCACATTTTGCGCGAATGCTTTTGT
ATTTAATTAAAAACCCAAATACTGTAAAAAAAAAAAAAAAAA

LD17530.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn9-RA 1544 Rpn9-RA 92..1417 1..1326 6630 100 Plus
Rpn9.a 1339 Rpn9.a 11..1339 1..1325 6560 99.6 Plus
Rpn9-RB 1450 Rpn9-RB 211..1450 86..1325 6200 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19555437..19555969 848..316 2665 100 Minus
chr3R 27901430 chr3R 19554899..19555377 1325..847 2320 99 Minus
chr3R 27901430 chr3R 19556192..19556392 201..1 1005 100 Minus
chr3R 27901430 chr3R 19556023..19556136 315..202 570 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:05:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23732041..23732573 848..316 2665 100 Minus
3R 32079331 3R 23731502..23731981 1326..847 2400 100 Minus
3R 32079331 3R 23732796..23732996 201..1 1005 100 Minus
3R 32079331 3R 23732627..23732740 315..202 570 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23472872..23473404 848..316 2665 100 Minus
3R 31820162 3R 23472333..23472812 1326..847 2400 100 Minus
3R 31820162 3R 23473627..23473827 201..1 1005 100 Minus
3R 31820162 3R 23473458..23473571 315..202 570 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:22:19 has no hits.

LD17530.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:23:08 Download gff for LD17530.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19554899..19555377 847..1325 98 <- Minus
chr3R 19555439..19555969 316..846 100 <- Minus
chr3R 19556023..19556136 202..315 100 <- Minus
chr3R 19556192..19556392 1..201 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:52:17 Download gff for LD17530.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RA 1..1149 92..1240 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:55 Download gff for LD17530.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RA 1..1149 92..1240 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:16:56 Download gff for LD17530.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RB 1..1149 92..1240 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:40 Download gff for LD17530.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RA 1..1149 92..1240 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:19:48 Download gff for LD17530.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RB 1..1149 92..1240 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:29:17 Download gff for LD17530.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RA 1..1325 1..1325 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:55 Download gff for LD17530.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RA 14..1338 1..1325 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:16:56 Download gff for LD17530.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RA 16..1340 1..1325 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:40 Download gff for LD17530.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RA 1..1325 1..1325 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:19:48 Download gff for LD17530.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RA 16..1340 1..1325 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:23:08 Download gff for LD17530.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23731503..23731981 847..1325 100 <- Minus
3R 23732043..23732573 316..846 100 <- Minus
3R 23732627..23732740 202..315 100 <- Minus
3R 23732796..23732996 1..201 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:23:08 Download gff for LD17530.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23731503..23731981 847..1325 100 <- Minus
3R 23732043..23732573 316..846 100 <- Minus
3R 23732627..23732740 202..315 100 <- Minus
3R 23732796..23732996 1..201 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:23:08 Download gff for LD17530.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23731503..23731981 847..1325 100 <- Minus
3R 23732043..23732573 316..846 100 <- Minus
3R 23732627..23732740 202..315 100 <- Minus
3R 23732796..23732996 1..201 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:16:56 Download gff for LD17530.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19558518..19558718 1..201 100   Minus
arm_3R 19557225..19557703 847..1325 100 <- Minus
arm_3R 19557765..19558295 316..846 100 <- Minus
arm_3R 19558349..19558462 202..315 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:51:27 Download gff for LD17530.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23472334..23472812 847..1325 100 <- Minus
3R 23472874..23473404 316..846 100 <- Minus
3R 23473458..23473571 202..315 100 <- Minus
3R 23473627..23473827 1..201 100   Minus

LD17530.hyp Sequence

Translation from 91 to 1239

> LD17530.hyp
MSNPQPNVTAYLATQKKTTNKELAAEWTLIEELYNEKLWNELTIKLVTFV
RHESLQDETALLQLYQNFLSTFETKINPYGLIQILEVVVDNIGDKKEAIE
FLEKMKDKVKICDEAVWYLQVMQGNLYLSNLNDLNATKKIIEELRDVLEE
AGNVTPVHGKYYMLASQYYRRVGKHSDYYRCGLQFLGCSMDEYPRDQWAQ
QAFFLGLAALLGDGVYNIGELLAHPILESLKGTENEWLMELLKAFNTGDI
NKFNDMKKIWSKIPDLAAQEVKLRQKISLLCLMEMTFKRSAIERAISFTD
IAQETKLPAKEVELLIMKALALDLVRGEIDQVAGVVNMSWVQPRVLNRSQ
IVGMASTLDTWMGAITNMEKLMENRAAEILTN*

LD17530.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn9-PA 382 CG10230-PA 1..382 1..382 1960 100 Plus
Rpn9-PB 382 CG10230-PB 1..382 1..382 1960 100 Plus

LD17530.pep Sequence

Translation from 91 to 1239

> LD17530.pep
MSNPQPNVTAYLATQKKTTNKELAAEWTLIEELYNEKLWNELTIKLVTFV
RHESLQDETALLQLYQNFLSTFETKINPYGLIQILEVVVDNIGDKKEAIE
FLEKMKDKVKICDEAVWYLQVMQGNLYLSNLNDLNATKKIIEELRDVLEE
AGNVTPVHGKYYMLASQYYRRVGKHSDYYRCGLQFLGCSMDEYPRDQWAQ
QAFFLGLAALLGDGVYNIGELLAHPILESLKGTENEWLMELLKAFNTGDI
NKFNDMKKIWSKIPDLAAQEVKLRQKISLLCLMEMTFKRSAIERAISFTD
IAQETKLPAKEVELLIMKALALDLVRGEIDQVAGVVNMSWVQPRVLNRSQ
IVGMASTLDTWMGAITNMEKLMENRAAEILTN*

LD17530.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18745-PA 382 GF18745-PA 1..382 1..382 1954 95.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12411-PA 382 GG12411-PA 1..382 1..382 2010 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11791-PA 382 GH11791-PA 1..382 1..382 1924 94.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn9-PA 382 CG10230-PA 1..382 1..382 1960 100 Plus
Rpn9-PB 382 CG10230-PB 1..382 1..382 1960 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22402-PA 382 GI22402-PA 1..382 1..382 1928 94.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13830-PA 382 GL13830-PA 1..382 1..382 1904 92.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10174-PA 382 GA10174-PA 1..382 1..382 1902 92.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23545-PA 382 GM23545-PA 1..382 1..382 2026 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18359-PA 382 GD18359-PA 1..382 1..382 2026 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24651-PA 382 GJ24651-PA 1..382 1..382 1923 94 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22776-PA 382 GK22776-PA 1..382 1..382 1860 90.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Rpn9-PA 382 GE23930-PA 1..382 1..382 2018 99 Plus