BDGP Sequence Production Resources |
Search the DGRC for LD17530
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 175 |
Well: | 30 |
Vector: | pBS SK- |
Associated Gene/Transcript | Rpn9-RA |
Protein status: | LD17530.pep: gold |
Preliminary Size: | 1554 |
Sequenced Size: | 1342 |
Gene | Date | Evidence |
---|---|---|
CG10230 | 2001-01-01 | Release 2 assignment |
CG10230 | 2001-10-10 | Blastp of sequenced clone |
CG10230 | 2003-01-01 | Sim4 clustering to Release 3 |
Rpn9 | 2008-04-29 | Release 5.5 accounting |
Rpn9 | 2008-08-15 | Release 5.9 accounting |
Rpn9 | 2008-12-18 | 5.12 accounting |
1342 bp (1342 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061232
> LD17530.complete CTGCGTCGGCGATTGTGATTTGCAATTTTTGTAGTTTGGGAATACATTAA ACATTACATTTGAAATTAATTCAACACAAAGCGCAGTTGCGATGTCCAAT CCTCAGCCTAATGTCACCGCCTATCTGGCGACCCAGAAGAAGACCACCAA CAAAGAACTCGCCGCCGAATGGACGCTCATCGAGGAGCTCTACAATGAAA AACTCTGGAATGAGCTGACCATCAAACTGGTGACCTTTGTGCGCCACGAA TCCTTGCAGGACGAAACTGCGCTGCTGCAGCTCTACCAGAATTTCCTGTC CACCTTCGAGACCAAAATAAACCCCTATGGCCTCATCCAGATTCTCGAGG TGGTGGTTGACAACATCGGTGACAAGAAGGAGGCCATCGAGTTCTTGGAG AAGATGAAGGACAAGGTGAAGATCTGCGACGAGGCCGTTTGGTATCTGCA GGTGATGCAGGGTAATCTGTACCTCAGCAACCTGAACGATCTGAATGCCA CCAAGAAGATCATCGAGGAACTGCGTGATGTCCTAGAGGAAGCGGGTAAT GTGACGCCCGTTCACGGCAAATACTACATGCTGGCATCCCAGTATTATCG GCGAGTGGGCAAGCACAGCGATTACTACCGATGTGGCCTACAGTTTCTGG GCTGCTCCATGGATGAGTACCCCCGTGATCAATGGGCCCAGCAGGCATTC TTCTTGGGTCTGGCTGCTCTCTTGGGCGATGGTGTCTACAACATAGGCGA ATTGCTGGCTCATCCCATTCTTGAGTCGCTTAAGGGCACGGAAAATGAGT GGCTCATGGAACTTCTTAAAGCCTTCAACACGGGCGATATTAACAAGTTT AATGACATGAAGAAAATCTGGTCCAAGATTCCCGATTTGGCTGCCCAGGA GGTCAAGTTGCGCCAGAAGATCTCCCTCCTTTGCCTCATGGAGATGACCT TCAAGCGCTCAGCCATCGAGCGAGCCATCTCCTTTACCGACATCGCGCAA GAGACCAAACTGCCCGCCAAGGAAGTGGAACTGCTTATCATGAAGGCTCT GGCTTTGGATCTCGTCCGCGGCGAGATTGACCAAGTGGCTGGAGTGGTTA ACATGTCGTGGGTGCAACCACGCGTCCTCAACCGCAGCCAGATTGTCGGC ATGGCCAGCACTCTGGACACATGGATGGGCGCCATCACGAACATGGAGAA ACTGATGGAGAATCGTGCCGCCGAAATCCTCACCAATTAGTTTTAGTTTC GCCTGATCTAGACGATCCCACATATTCACATTTTGCGCGAATGCTTTTGT ATTTAATTAAAAACCCAAATACTGTAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 19555437..19555969 | 848..316 | 2665 | 100 | Minus |
chr3R | 27901430 | chr3R | 19554899..19555377 | 1325..847 | 2320 | 99 | Minus |
chr3R | 27901430 | chr3R | 19556192..19556392 | 201..1 | 1005 | 100 | Minus |
chr3R | 27901430 | chr3R | 19556023..19556136 | 315..202 | 570 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 23732041..23732573 | 848..316 | 2665 | 100 | Minus |
3R | 32079331 | 3R | 23731502..23731981 | 1326..847 | 2400 | 100 | Minus |
3R | 32079331 | 3R | 23732796..23732996 | 201..1 | 1005 | 100 | Minus |
3R | 32079331 | 3R | 23732627..23732740 | 315..202 | 570 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 23472872..23473404 | 848..316 | 2665 | 100 | Minus |
3R | 31820162 | 3R | 23472333..23472812 | 1326..847 | 2400 | 100 | Minus |
3R | 31820162 | 3R | 23473627..23473827 | 201..1 | 1005 | 100 | Minus |
3R | 31820162 | 3R | 23473458..23473571 | 315..202 | 570 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 19554899..19555377 | 847..1325 | 98 | <- | Minus |
chr3R | 19555439..19555969 | 316..846 | 100 | <- | Minus |
chr3R | 19556023..19556136 | 202..315 | 100 | <- | Minus |
chr3R | 19556192..19556392 | 1..201 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn9-RA | 1..1149 | 92..1240 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn9-RA | 1..1149 | 92..1240 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn9-RB | 1..1149 | 92..1240 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn9-RA | 1..1149 | 92..1240 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn9-RB | 1..1149 | 92..1240 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn9-RA | 1..1325 | 1..1325 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn9-RA | 14..1338 | 1..1325 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn9-RA | 16..1340 | 1..1325 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn9-RA | 1..1325 | 1..1325 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn9-RA | 16..1340 | 1..1325 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23731503..23731981 | 847..1325 | 100 | <- | Minus |
3R | 23732043..23732573 | 316..846 | 100 | <- | Minus |
3R | 23732627..23732740 | 202..315 | 100 | <- | Minus |
3R | 23732796..23732996 | 1..201 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23731503..23731981 | 847..1325 | 100 | <- | Minus |
3R | 23732043..23732573 | 316..846 | 100 | <- | Minus |
3R | 23732627..23732740 | 202..315 | 100 | <- | Minus |
3R | 23732796..23732996 | 1..201 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23731503..23731981 | 847..1325 | 100 | <- | Minus |
3R | 23732043..23732573 | 316..846 | 100 | <- | Minus |
3R | 23732627..23732740 | 202..315 | 100 | <- | Minus |
3R | 23732796..23732996 | 1..201 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 19558518..19558718 | 1..201 | 100 | Minus | |
arm_3R | 19557225..19557703 | 847..1325 | 100 | <- | Minus |
arm_3R | 19557765..19558295 | 316..846 | 100 | <- | Minus |
arm_3R | 19558349..19558462 | 202..315 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23472334..23472812 | 847..1325 | 100 | <- | Minus |
3R | 23472874..23473404 | 316..846 | 100 | <- | Minus |
3R | 23473458..23473571 | 202..315 | 100 | <- | Minus |
3R | 23473627..23473827 | 1..201 | 100 | Minus |
Translation from 91 to 1239
> LD17530.hyp MSNPQPNVTAYLATQKKTTNKELAAEWTLIEELYNEKLWNELTIKLVTFV RHESLQDETALLQLYQNFLSTFETKINPYGLIQILEVVVDNIGDKKEAIE FLEKMKDKVKICDEAVWYLQVMQGNLYLSNLNDLNATKKIIEELRDVLEE AGNVTPVHGKYYMLASQYYRRVGKHSDYYRCGLQFLGCSMDEYPRDQWAQ QAFFLGLAALLGDGVYNIGELLAHPILESLKGTENEWLMELLKAFNTGDI NKFNDMKKIWSKIPDLAAQEVKLRQKISLLCLMEMTFKRSAIERAISFTD IAQETKLPAKEVELLIMKALALDLVRGEIDQVAGVVNMSWVQPRVLNRSQ IVGMASTLDTWMGAITNMEKLMENRAAEILTN*
Translation from 91 to 1239
> LD17530.pep MSNPQPNVTAYLATQKKTTNKELAAEWTLIEELYNEKLWNELTIKLVTFV RHESLQDETALLQLYQNFLSTFETKINPYGLIQILEVVVDNIGDKKEAIE FLEKMKDKVKICDEAVWYLQVMQGNLYLSNLNDLNATKKIIEELRDVLEE AGNVTPVHGKYYMLASQYYRRVGKHSDYYRCGLQFLGCSMDEYPRDQWAQ QAFFLGLAALLGDGVYNIGELLAHPILESLKGTENEWLMELLKAFNTGDI NKFNDMKKIWSKIPDLAAQEVKLRQKISLLCLMEMTFKRSAIERAISFTD IAQETKLPAKEVELLIMKALALDLVRGEIDQVAGVVNMSWVQPRVLNRSQ IVGMASTLDTWMGAITNMEKLMENRAAEILTN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18745-PA | 382 | GF18745-PA | 1..382 | 1..382 | 1954 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12411-PA | 382 | GG12411-PA | 1..382 | 1..382 | 2010 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11791-PA | 382 | GH11791-PA | 1..382 | 1..382 | 1924 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rpn9-PA | 382 | CG10230-PA | 1..382 | 1..382 | 1960 | 100 | Plus |
Rpn9-PB | 382 | CG10230-PB | 1..382 | 1..382 | 1960 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22402-PA | 382 | GI22402-PA | 1..382 | 1..382 | 1928 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13830-PA | 382 | GL13830-PA | 1..382 | 1..382 | 1904 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10174-PA | 382 | GA10174-PA | 1..382 | 1..382 | 1902 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23545-PA | 382 | GM23545-PA | 1..382 | 1..382 | 2026 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18359-PA | 382 | GD18359-PA | 1..382 | 1..382 | 2026 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24651-PA | 382 | GJ24651-PA | 1..382 | 1..382 | 1923 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22776-PA | 382 | GK22776-PA | 1..382 | 1..382 | 1860 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Rpn9-PA | 382 | GE23930-PA | 1..382 | 1..382 | 2018 | 99 | Plus |