![]() | BDGP Sequence Production Resources |
Search the DGRC for LD17927
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 179 |
Well: | 27 |
Vector: | pBS SK- |
Associated Gene/Transcript | CG2972-RA |
Protein status: | LD17927.pep: gold |
Preliminary Size: | 1899 |
Sequenced Size: | 1621 |
Gene | Date | Evidence |
---|---|---|
CG2972 | 2001-01-01 | Release 2 assignment |
CG2972 | 2002-06-06 | Blastp of sequenced clone |
CG2972 | 2003-01-01 | Sim4 clustering to Release 3 |
CG2972 | 2008-04-29 | Release 5.5 accounting |
CG2972 | 2008-08-15 | Release 5.9 accounting |
CG2972 | 2008-12-18 | 5.12 accounting |
1621 bp (1621 high quality bases) assembled on 2002-06-06
GenBank Submission: AY119594
> LD17927.complete CGCGACACGTGCAGAAATTGTTATTTTTTGCCGTCCTTTGTTTTTCATGT GAAAATTAGCACTGAAAATGGCCGAAACGAGCGAAAAGATCAAGTTCCTT GTGGCGGACACCACAGCCTTTATAAACGCCGTGCCCCTGAATGAATACGC GGAGCAGGTGCTCACCGTGCCGGATGTGGTGGCCGAAGTGCGCAACAAGC GCCAGATTCGCCGCCTCTGCGTTCTGCCCTTCGACCTCCAGGTGCGCGAG CCTCGTCCGGAGAGCATTAAACACTGCGTGGAGTTCGCCAAGAAAACGGG TGACTACGCGAGTCTCTCGGGGATCGATCTGAAAGTGATCTCGCTCACCT ACGAACTGGAAGCAGACAACGTGGGCACTGATCACCTGCGCCAGGAGCCT GTGATGGCGCAGACCATTGCGTCCAAGGATAAACCCGAGGAGATGCAGGA TGCTAATAACAAGAGACTGGTCGGTTGGTACATGCCCGAGGGCGAAGAGG AGGAGGAGGAGGATTCCGAGGAGGAAGATGATTACTCCCAGGAAGAGGAC GATGCTGAAGGCGATGAGCAGGAGGCAAATGAATCCCCAGACACTGTTAA AGCCGCCATCGAAGCCCAATTGGCCGGCAAGGAACCATTTGCCAGCGAGA CCATCGAAAAGGAGGAGGACCAAGACCAGGAGCCCAGTCAGGAGGAGCTG GACAAGCTGTTCGAGCAGCTCAAATGCGCACCCAGTGCCGAGGAAGAGAA AGAGCTCTCGGAACTGCTCGTTTCCCAGCCGGCCGAAGTAGATGAGGAGG TATCCGAGCCACAAGAAGCCAAACAGAGCCAAAATCTCGACGAGGATGTG GGTGACGATGGCTGGATCACGCATTCAAACATCAAGAAGGCCAAGAAAGC GCTCGAGGGCAAAGTGGAAACGGATGAAGTGCCGCCCGTCGCCTGCATGA CCACCGATTATGCGCTGCAGAACGTGCTCAAGCAGCTAAATCTCCACCTG GCCGCCCTCAATGGCCGGATCATCAAGCAGTTGCGCACATATATACTCCG CTGCTACGCGTGCTACAAGACCACCAGCATCATGACCAAGGTGTTTTGCC CCAATTGTGGCAACAAGACGCTGAAACGTGTGGCCGTCAGTCTGGACGAG AACGGTCGCCAGGTGATTCACATCAATACGCGCCGTCCGCTGACCAATAA GTACAAGAATCAGAGCCTGCCTCGCTTCCAGGGCGGCAAGCATTCGAGAA ATCCGATCCTGTTCGAGGATCAGCCGATGCCCAGGCAGATGCCGTCGCGC GTTGCCAAGACCAAGACGAACGCTCTGGATCAGGACTACACGGCCGGATT CTCGCCCTTCGTGCTGCGCGACGTGGACTCCAAGTCCGCCATGCTGCGCT CCAAGGGCAACCTCAAGGAGTGGGCCAGGAATAACAACTTCGAGGAGGAT CGCCGGCGCAAGAACTACAATCGCTTGTACAAGTAGATTACTCTGGGCAG TAAGGGGCTAGTTGTTCATTAGCTTTCCAATCGTAGACTTTATATAAATT TATATAATATATAAAATAAAACACAAGGGAGAACCTGAAACTTTGTAAAA TGTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2972-RA | 1838 | CG2972-RA | 28..1633 | 1..1606 | 8030 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Juan | 4236 | Juan JUAN 4236bp | 4032..4086 | 1593..1539 | 113 | 67.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 9974837..9974977 | 1..142 | 97 | -> | Plus |
chrX | 9975037..9975381 | 143..487 | 99 | == | Plus |
chrX | 9975472..9976497 | 578..1603 | 95 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2972-RA | 1..1419 | 68..1486 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2972-RA | 1..1419 | 68..1486 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2972-RA | 1..1419 | 68..1486 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2972-RA | 1..1419 | 68..1486 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2972-RA | 1..1419 | 68..1486 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2972-RA | 12..1614 | 1..1603 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2972-RA | 12..1614 | 1..1603 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2972-RA | 28..1630 | 1..1603 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2972-RA | 12..1614 | 1..1603 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2972-RA | 28..1630 | 1..1603 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10083181..10083322 | 1..142 | 100 | -> | Plus |
X | 10083382..10084842 | 143..1603 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10083181..10083322 | 1..142 | 100 | -> | Plus |
X | 10083382..10084842 | 143..1603 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10083181..10083322 | 1..142 | 100 | -> | Plus |
X | 10083382..10084842 | 143..1603 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 9977214..9977355 | 1..142 | 100 | -> | Plus |
arm_X | 9977415..9978875 | 143..1603 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10091480..10092940 | 143..1603 | 100 | Plus | |
X | 10091279..10091420 | 1..142 | 100 | -> | Plus |
Translation from 67 to 1485
> LD17927.hyp MAETSEKIKFLVADTTAFINAVPLNEYAEQVLTVPDVVAEVRNKRQIRRL CVLPFDLQVREPRPESIKHCVEFAKKTGDYASLSGIDLKVISLTYELEAD NVGTDHLRQEPVMAQTIASKDKPEEMQDANNKRLVGWYMPEGEEEEEEDS EEEDDYSQEEDDAEGDEQEANESPDTVKAAIEAQLAGKEPFASETIEKEE DQDQEPSQEELDKLFEQLKCAPSAEEEKELSELLVSQPAEVDEEVSEPQE AKQSQNLDEDVGDDGWITHSNIKKAKKALEGKVETDEVPPVACMTTDYAL QNVLKQLNLHLAALNGRIIKQLRTYILRCYACYKTTSIMTKVFCPNCGNK TLKRVAVSLDENGRQVIHINTRRPLTNKYKNQSLPRFQGGKHSRNPILFE DQPMPRQMPSRVAKTKTNALDQDYTAGFSPFVLRDVDSKSAMLRSKGNLK EWARNNNFEEDRRRKNYNRLYK*
Translation from 67 to 1485
> LD17927.pep MAETSEKIKFLVADTTAFINAVPLNEYAEQVLTVPDVVAEVRNKRQIRRL CVLPFDLQVREPRPESIKHCVEFAKKTGDYASLSGIDLKVISLTYELEAD NVGTDHLRQEPVMAQTIASKDKPEEMQDANNKRLVGWYMPEGEEEEEEDS EEEDDYSQEEDDAEGDEQEANESPDTVKAAIEAQLAGKEPFASETIEKEE DQDQEPSQEELDKLFEQLKCAPSAEEEKELSELLVSQPAEVDEEVSEPQE AKQSQNLDEDVGDDGWITHSNIKKAKKALEGKVETDEVPPVACMTTDYAL QNVLKQLNLHLAALNGRIIKQLRTYILRCYACYKTTSIMTKVFCPNCGNK TLKRVAVSLDENGRQVIHINTRRPLTNKYKNQSLPRFQGGKHSRNPILFE DQPMPRQMPSRVAKTKTNALDQDYTAGFSPFVLRDVDSKSAMLRSKGNLK EWARNNNFEEDRRRKNYNRLYK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10341-PA | 467 | GF10341-PA | 1..467 | 1..472 | 1961 | 82.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18342-PA | 479 | GG18342-PA | 1..479 | 1..472 | 2230 | 91.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12205-PA | 476 | GH12205-PA | 1..476 | 1..472 | 1891 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2972-PB | 472 | CG2972-PB | 1..472 | 1..472 | 2441 | 100 | Plus |
CG2972-PA | 472 | CG2972-PA | 1..472 | 1..472 | 2441 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10936-PA | 485 | GI10936-PA | 1..485 | 1..472 | 1919 | 79.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16394-PA | 253 | GL16394-PA | 17..215 | 200..402 | 684 | 66.7 | Plus |
Dper\GL16393-PA | 152 | GL16393-PA | 1..146 | 1..146 | 675 | 84.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15547-PA | 466 | GA15547-PA | 1..466 | 1..472 | 1839 | 76.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11407-PA | 357 | GM11407-PA | 1..357 | 113..472 | 1562 | 93.9 | Plus |
Dsec\GM11406-PA | 104 | GM11406-PA | 1..94 | 1..94 | 479 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16972-PA | 469 | GD16972-PA | 1..469 | 1..472 | 2432 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18597-PA | 479 | GJ18597-PA | 1..479 | 1..472 | 1887 | 79.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25644-PA | 478 | GK25644-PA | 1..478 | 1..472 | 1900 | 77.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17829-PA | 472 | GE17829-PA | 1..472 | 1..472 | 2232 | 93.9 | Plus |