Clone LD17927 Report

Search the DGRC for LD17927

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:179
Well:27
Vector:pBS SK-
Associated Gene/TranscriptCG2972-RA
Protein status:LD17927.pep: gold
Preliminary Size:1899
Sequenced Size:1621

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2972 2001-01-01 Release 2 assignment
CG2972 2002-06-06 Blastp of sequenced clone
CG2972 2003-01-01 Sim4 clustering to Release 3
CG2972 2008-04-29 Release 5.5 accounting
CG2972 2008-08-15 Release 5.9 accounting
CG2972 2008-12-18 5.12 accounting

Clone Sequence Records

LD17927.complete Sequence

1621 bp (1621 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119594

> LD17927.complete
CGCGACACGTGCAGAAATTGTTATTTTTTGCCGTCCTTTGTTTTTCATGT
GAAAATTAGCACTGAAAATGGCCGAAACGAGCGAAAAGATCAAGTTCCTT
GTGGCGGACACCACAGCCTTTATAAACGCCGTGCCCCTGAATGAATACGC
GGAGCAGGTGCTCACCGTGCCGGATGTGGTGGCCGAAGTGCGCAACAAGC
GCCAGATTCGCCGCCTCTGCGTTCTGCCCTTCGACCTCCAGGTGCGCGAG
CCTCGTCCGGAGAGCATTAAACACTGCGTGGAGTTCGCCAAGAAAACGGG
TGACTACGCGAGTCTCTCGGGGATCGATCTGAAAGTGATCTCGCTCACCT
ACGAACTGGAAGCAGACAACGTGGGCACTGATCACCTGCGCCAGGAGCCT
GTGATGGCGCAGACCATTGCGTCCAAGGATAAACCCGAGGAGATGCAGGA
TGCTAATAACAAGAGACTGGTCGGTTGGTACATGCCCGAGGGCGAAGAGG
AGGAGGAGGAGGATTCCGAGGAGGAAGATGATTACTCCCAGGAAGAGGAC
GATGCTGAAGGCGATGAGCAGGAGGCAAATGAATCCCCAGACACTGTTAA
AGCCGCCATCGAAGCCCAATTGGCCGGCAAGGAACCATTTGCCAGCGAGA
CCATCGAAAAGGAGGAGGACCAAGACCAGGAGCCCAGTCAGGAGGAGCTG
GACAAGCTGTTCGAGCAGCTCAAATGCGCACCCAGTGCCGAGGAAGAGAA
AGAGCTCTCGGAACTGCTCGTTTCCCAGCCGGCCGAAGTAGATGAGGAGG
TATCCGAGCCACAAGAAGCCAAACAGAGCCAAAATCTCGACGAGGATGTG
GGTGACGATGGCTGGATCACGCATTCAAACATCAAGAAGGCCAAGAAAGC
GCTCGAGGGCAAAGTGGAAACGGATGAAGTGCCGCCCGTCGCCTGCATGA
CCACCGATTATGCGCTGCAGAACGTGCTCAAGCAGCTAAATCTCCACCTG
GCCGCCCTCAATGGCCGGATCATCAAGCAGTTGCGCACATATATACTCCG
CTGCTACGCGTGCTACAAGACCACCAGCATCATGACCAAGGTGTTTTGCC
CCAATTGTGGCAACAAGACGCTGAAACGTGTGGCCGTCAGTCTGGACGAG
AACGGTCGCCAGGTGATTCACATCAATACGCGCCGTCCGCTGACCAATAA
GTACAAGAATCAGAGCCTGCCTCGCTTCCAGGGCGGCAAGCATTCGAGAA
ATCCGATCCTGTTCGAGGATCAGCCGATGCCCAGGCAGATGCCGTCGCGC
GTTGCCAAGACCAAGACGAACGCTCTGGATCAGGACTACACGGCCGGATT
CTCGCCCTTCGTGCTGCGCGACGTGGACTCCAAGTCCGCCATGCTGCGCT
CCAAGGGCAACCTCAAGGAGTGGGCCAGGAATAACAACTTCGAGGAGGAT
CGCCGGCGCAAGAACTACAATCGCTTGTACAAGTAGATTACTCTGGGCAG
TAAGGGGCTAGTTGTTCATTAGCTTTCCAATCGTAGACTTTATATAAATT
TATATAATATATAAAATAAAACACAAGGGAGAACCTGAAACTTTGTAAAA
TGTAAAAAAAAAAAAAAAAAA

LD17927.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG2972-RA 1838 CG2972-RA 28..1633 1..1606 8030 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9975037..9976497 143..1603 7095 99 Plus
chrX 22417052 chrX 9974838..9974978 3..143 675 98.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:05:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10083382..10084845 143..1606 7320 100 Plus
X 23542271 X 10083181..10083323 1..143 715 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10091480..10092943 143..1606 7320 100 Plus
X 23527363 X 10091279..10091421 1..143 715 100 Plus
Blast to na_te.dros performed 2019-03-16 00:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
Juan 4236 Juan JUAN 4236bp 4032..4086 1593..1539 113 67.3 Minus

LD17927.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:35:30 Download gff for LD17927.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9974837..9974977 1..142 97 -> Plus
chrX 9975037..9975381 143..487 99 == Plus
chrX 9975472..9976497 578..1603 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:52:32 Download gff for LD17927.complete
Subject Subject Range Query Range Percent Splice Strand
CG2972-RA 1..1419 68..1486 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:30:45 Download gff for LD17927.complete
Subject Subject Range Query Range Percent Splice Strand
CG2972-RA 1..1419 68..1486 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:57:07 Download gff for LD17927.complete
Subject Subject Range Query Range Percent Splice Strand
CG2972-RA 1..1419 68..1486 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:20:54 Download gff for LD17927.complete
Subject Subject Range Query Range Percent Splice Strand
CG2972-RA 1..1419 68..1486 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:06:00 Download gff for LD17927.complete
Subject Subject Range Query Range Percent Splice Strand
CG2972-RA 1..1419 68..1486 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:00:34 Download gff for LD17927.complete
Subject Subject Range Query Range Percent Splice Strand
CG2972-RA 12..1614 1..1603 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:30:45 Download gff for LD17927.complete
Subject Subject Range Query Range Percent Splice Strand
CG2972-RA 12..1614 1..1603 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:57:07 Download gff for LD17927.complete
Subject Subject Range Query Range Percent Splice Strand
CG2972-RA 28..1630 1..1603 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:20:54 Download gff for LD17927.complete
Subject Subject Range Query Range Percent Splice Strand
CG2972-RA 12..1614 1..1603 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:06:00 Download gff for LD17927.complete
Subject Subject Range Query Range Percent Splice Strand
CG2972-RA 28..1630 1..1603 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:35:30 Download gff for LD17927.complete
Subject Subject Range Query Range Percent Splice Strand
X 10083181..10083322 1..142 100 -> Plus
X 10083382..10084842 143..1603 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:35:30 Download gff for LD17927.complete
Subject Subject Range Query Range Percent Splice Strand
X 10083181..10083322 1..142 100 -> Plus
X 10083382..10084842 143..1603 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:35:30 Download gff for LD17927.complete
Subject Subject Range Query Range Percent Splice Strand
X 10083181..10083322 1..142 100 -> Plus
X 10083382..10084842 143..1603 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:57:07 Download gff for LD17927.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9977214..9977355 1..142 100 -> Plus
arm_X 9977415..9978875 143..1603 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:54:38 Download gff for LD17927.complete
Subject Subject Range Query Range Percent Splice Strand
X 10091480..10092940 143..1603 100   Plus
X 10091279..10091420 1..142 100 -> Plus

LD17927.hyp Sequence

Translation from 67 to 1485

> LD17927.hyp
MAETSEKIKFLVADTTAFINAVPLNEYAEQVLTVPDVVAEVRNKRQIRRL
CVLPFDLQVREPRPESIKHCVEFAKKTGDYASLSGIDLKVISLTYELEAD
NVGTDHLRQEPVMAQTIASKDKPEEMQDANNKRLVGWYMPEGEEEEEEDS
EEEDDYSQEEDDAEGDEQEANESPDTVKAAIEAQLAGKEPFASETIEKEE
DQDQEPSQEELDKLFEQLKCAPSAEEEKELSELLVSQPAEVDEEVSEPQE
AKQSQNLDEDVGDDGWITHSNIKKAKKALEGKVETDEVPPVACMTTDYAL
QNVLKQLNLHLAALNGRIIKQLRTYILRCYACYKTTSIMTKVFCPNCGNK
TLKRVAVSLDENGRQVIHINTRRPLTNKYKNQSLPRFQGGKHSRNPILFE
DQPMPRQMPSRVAKTKTNALDQDYTAGFSPFVLRDVDSKSAMLRSKGNLK
EWARNNNFEEDRRRKNYNRLYK*

LD17927.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2972-PB 472 CG2972-PB 1..472 1..472 2441 100 Plus
CG2972-PA 472 CG2972-PA 1..472 1..472 2441 100 Plus

LD17927.pep Sequence

Translation from 67 to 1485

> LD17927.pep
MAETSEKIKFLVADTTAFINAVPLNEYAEQVLTVPDVVAEVRNKRQIRRL
CVLPFDLQVREPRPESIKHCVEFAKKTGDYASLSGIDLKVISLTYELEAD
NVGTDHLRQEPVMAQTIASKDKPEEMQDANNKRLVGWYMPEGEEEEEEDS
EEEDDYSQEEDDAEGDEQEANESPDTVKAAIEAQLAGKEPFASETIEKEE
DQDQEPSQEELDKLFEQLKCAPSAEEEKELSELLVSQPAEVDEEVSEPQE
AKQSQNLDEDVGDDGWITHSNIKKAKKALEGKVETDEVPPVACMTTDYAL
QNVLKQLNLHLAALNGRIIKQLRTYILRCYACYKTTSIMTKVFCPNCGNK
TLKRVAVSLDENGRQVIHINTRRPLTNKYKNQSLPRFQGGKHSRNPILFE
DQPMPRQMPSRVAKTKTNALDQDYTAGFSPFVLRDVDSKSAMLRSKGNLK
EWARNNNFEEDRRRKNYNRLYK*

LD17927.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10341-PA 467 GF10341-PA 1..467 1..472 1961 82.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18342-PA 479 GG18342-PA 1..479 1..472 2230 91.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12205-PA 476 GH12205-PA 1..476 1..472 1891 76.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2972-PB 472 CG2972-PB 1..472 1..472 2441 100 Plus
CG2972-PA 472 CG2972-PA 1..472 1..472 2441 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10936-PA 485 GI10936-PA 1..485 1..472 1919 79.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16394-PA 253 GL16394-PA 17..215 200..402 684 66.7 Plus
Dper\GL16393-PA 152 GL16393-PA 1..146 1..146 675 84.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15547-PA 466 GA15547-PA 1..466 1..472 1839 76.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11407-PA 357 GM11407-PA 1..357 113..472 1562 93.9 Plus
Dsec\GM11406-PA 104 GM11406-PA 1..94 1..94 479 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16972-PA 469 GD16972-PA 1..469 1..472 2432 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18597-PA 479 GJ18597-PA 1..479 1..472 1887 79.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25644-PA 478 GK25644-PA 1..478 1..472 1900 77.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17829-PA 472 GE17829-PA 1..472 1..472 2232 93.9 Plus