BDGP Sequence Production Resources |
Search the DGRC for LD17962
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 179 |
Well: | 62 |
Vector: | pBS SK- |
Associated Gene/Transcript | stwl-RA |
Protein status: | LD17962.pep: gold |
Preliminary Size: | 3287 |
Sequenced Size: | 3627 |
Gene | Date | Evidence |
---|---|---|
CG3836 | 2001-01-01 | Release 2 assignment |
CG3836 | 2002-06-30 | Blastp of sequenced clone |
CG3836 | 2003-01-01 | Sim4 clustering to Release 3 |
stwl | 2008-04-29 | Release 5.5 accounting |
stwl | 2008-08-15 | Release 5.9 accounting |
stwl | 2008-12-18 | 5.12 accounting |
3627 bp (3627 high quality bases) assembled on 2002-06-30
GenBank Submission: AY129443
> LD17962.complete TTTTTAGTCTCAGCTGCTGCGCGCGTGTGTTGTGATTGTGTGAATTGCGT TTGCGTTTGTAGCATAACACAAAACCGATAAATTCCTGGCGAAGCGAGCT CTCTCGATTGGATTCTTGCAAAGTGAACTAGCGATGAGCGCCGCCTCTGA GGTGAACCTGATGTTGCTGCGGTCAGTGGAGAAGCAGACTGCGCTTTATG ATCGTACCGACGAAAACTATAGGAAGCGCCTGCCGAGTGAGAACGCCTGG GACATGGTTGCCTCCGAAGTTGGAGAGTCGGTGGAAAAATGCAAGCGACG CTGGCGTCAGCTGCGAAATGACTATACCCGCTGGTGCAACGCCGACGCCA ACCGGCGACGAAATGGCCAGCGTCGTTTGGCTTATCCGCTGGCCGATGAG CTGCGCTTTTTGGACCGCCATCTAAACATAGCTGACGACATGGCTGCCGA CGATGACCGCAGCGTATCATCGGACAAGGACAGGGATAACAATAGAGACA GCGAGGGCGTGGATCATCATGCTCAGGCGTCATTAAAAGAACGCGCATCA TCGACAAGCAAGTTAGTTAAGGAGGTCAAGCTGGCAAGTCAAGTTCGTAA GGAAAAATCGTCCCAAGACAAGAGAGAAAATTGGGAAAATCCTGGAGATA AACAGCGATCTAGGAAGAAAAGTGCTGAAGAGAAGCTGAATGATTTGGAG GAATCGGACGAACCAGAGAAGGTTCCTGAACTCGATAGTTTTCTGCAGTC TGATAATGAAGACGACGAGTGCATGGACGAGGAGCACCTAGAAGATCTGG AAGGTTTCGATTTTGACTTGGAACAATCGAATCAGGAAAAGGAGTTAACG CCGGAGAAGTCTCTAGAGAAGAATAACACCGACTCAACTGTTAGCCAGCC GGAGTTCTTTGTCAAGCAAACCAGAGATCCTCGTTTGCTAATTATTGGCA GAAAGAATTCGACGTCTTCGTTTGCTGAATCCAAGGCTTCAAAATCTATT TCCGGGGATCCTCTGGAAACGGCTATGGAAGATAGTGGCGATGAATATGG TAGGGATGGTGAAAAACGCGTCACAGGCAGCGACACTACTTCTCCAACCC GACGTCCACGTCGCGCAGCCCGTGCATCAATAAGTTTCGCTGGCATAAGG GATTTACCGATCCAGAAACCAGGCCAAGCACAACGAATGACGCGATTGCA GCGCAGGAAATCTATGAGTTTAGCGGCTGTACACAGTGTAAGGAGCTCCA CATCGCCTGTGAAAATGACTCCAGTCCCCAGGTCTCAGCCGATCAACAAG CCGCCATCCGGGCCAGTCCAGATCACGAAAATCAGTCATCGGGATGACAT CTTCCCGAGACCTGCGGTGCCATCTGGAGTTGTGAATATAAATCAAAACC AACTCAAGACTCAACAACAGCAGAAGACGCTGATCTTTCCGACGACCGAT GAAGCGATCGCTAACCCGCAGGGATCTGGTCCACCACAAAGGAGGTCCGT GGGTAGGCCGCCCAAGAAGCTACCTATGGTGCAGCGAATAGTTGCGCCGG AAACGCAGACCAAGCCACAGTCGCCCATAAACACCAAAGTCCTGACCATT GGCAAGCCCACCAGCTCCGTCGCGAGTGGTAACATAAATAATATTGCTAT CAAAAGCAACGTCGTTACTAGCATAAGCAGCAGCACCGCTACTACTAATA CCATTACCAAAGGTACCAGTAACAACAGCATCAAAACTACTGAAAACGTT AATGTAATAAGCTACAGTCCGAATTCATCTAGCACCAGCAGCAGCAGCAA GGCCACCACTGGTGCCTCTGGTGCGGTGATAACTAATATACCCACAACCA CCACAGCTGGAACATCCGTTCCGGTCGGAAAGAGTATAACCCAATTGAAA ATGACTGAGCGAGGCACTCAAACCGGAGTCCAGAATCCTTTCTCCGATAA TTACTTTCTCGAAATGATCAAGCCCCAGATGCAGGAAATGAACCCCCGTC AGAAGATGCACTTTAAGAAGAAAGTATTCCAAGCGCTGATGGAAACCTTT GATGATGCTACCGATTTCCCAACGTCTAAAGAACTGCAGCATTTTAATAT AAACACTCCTTCAGGATTTGAGCACATTACAGATCCGGAACTTCGATTGG TCAGGGAGCTAGTCAGCATGGTGAGCGCGGCTAAGGTTACCCTAATTAGA CCGCCAGGAGAAGCTACAGCTATAGCTACAGCTTCCCGCAGTGGAATTGC TCCTGAGGTACAGCGAGGACCCCGAACAAATATGACACGCCAAGTCATTC AGAGGGTATACAAGCCAGGCACTGGACAAGAGATCGCCCCCACCAGCCCG GCGGGTGGACTAGATAAGAGGTTGTTCAGGTTAGCGGCTATGGGTGGTAA ACCGAATGGCAACTTGAGTGCCACTCAGGAAATTTTGCGCAAGGATAGTG TTGACAGTAACCATAGTGTGGTCAAGGTGGCCAACCACGCCCCAACAGGC AGTCCCAAAGGAGCTGCTGTAGTGGCTGCTATAAGGCCGCAGGGTTCATT GATCAACAGTTTCTTTGGACAAGGCAATGGACCGACGACGGCCAAGGGAG CTGCCTCCGAGAATATCCGCGCCATGTCCAGGAGGTATTCCGTGTGCGGT AGCAGCAATCCACCCAATGCCCAAAACGCTAGCCAAGGTTCCGCCAATGG CAGCACCATAAACTCCAATGCTAGCGCTATGGAAGCGTCTATGCTTAAGC GGCGATTGATAGCAGCTGGGCATGGAATGGTGCCACCTACCCAACGCCCT CGGTATTCTGCCGTAGGTGCTAGTCAAATGACCACTGCATCGCAAGGCAG CAGTTTACTAGTGAGGAAGTCTGTGGGCTGCGTTCCTGCTTACCAAAAGC AAATCTCACCCACTGGCGGTGCCTCCCTGCTTCAGAAAACTCCGCAGATT GCCAGTGTGCAAGGATCTGCCTTCAATGACTTTGCCCAGCCCAAGCCCGC TGCAACGGCCTCTGTAAACGGCGAAGAAAGTTCGCCTACCTCGGCGCTGA AGCGCAGCTTGGTGGTGGCTAATACCAAAACCTCCTTTCAGGACCTTCTT CAGCAGGCCAGTCAGACGGTGCAGAGAAATAAAATTGAATCCTCGGAGAC AGCAGCCACTATTGCTGCGGATGATTTTTCGCTGGACAACCTTAAGCGAG AGCCAGTGGATCCCGCGGAGGATCACAATGACATACTCGGTGTTTAAGAC CAGGCCAAAGAAATTTCCGAGTATTGATTAAAGAGTAAAGAATTAAGACA GATTCATTAAATCGTAAATAACACGTTGAAAAATTGTTAAGCTATCTAAT GCACTTATAATGTTGCGTTAAACATTTTTTATAGTTCCCTATAATTTTAA GAATTTCGAATTTTTTTTTTTTGGAAAAAGTTTTTAACTTTTTCTATTTT GTTCATAATTTTTTAGACGATAGAAAACCGACAGTTTTGTTCAAAATTTG CACAAGAAAAATGATTAATGAGAAATCGAATCTTAACTTTATTTCACATT TTCTAGTTATATATATCGAATAAAAATTGCCCTTATAAGTTAAACAAAAA GGACAACTGAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2480 | 1647..1812 | 166 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2544 | 1576..1804 | 160 | 54.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6927 | 1670..1861 | 157 | 57.6 | Plus |
rover | 7318 | rover ROVER 7318bp | 626..760 | 3466..3344 | 142 | 63.2 | Minus |
rover | 7318 | rover ROVER 7318bp | 777..911 | 3466..3344 | 142 | 63.2 | Minus |
rover | 7318 | rover ROVER 7318bp | 928..1062 | 3466..3344 | 142 | 63.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6704..6934 | 1592..1818 | 136 | 54.1 | Plus |
Tirant | 8526 | Tirant TIRANT 8526bp | 5592..5760 | 3559..3402 | 127 | 58.7 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7119..7204 | 1385..1471 | 126 | 65.2 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8592..8657 | 1405..1471 | 125 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6828 | 1698..1808 | 123 | 56.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2428 | 1673..1808 | 119 | 58.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 14393597..14396924 | 282..3609 | 99 | <- | Minus |
chr3L | 14399688..14399968 | 1..281 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stwl-RA | 1..3114 | 134..3247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stwl-RA | 1..3114 | 134..3247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stwl-RA | 1..3114 | 134..3247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stwl-RA | 1..3114 | 134..3247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stwl-RA | 1..3114 | 134..3247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stwl-RA | 29..3637 | 1..3609 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stwl-RA | 29..3637 | 1..3609 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stwl-RA | 45..3653 | 1..3609 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stwl-RA | 29..3637 | 1..3609 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
stwl-RA | 45..3653 | 1..3609 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14403510..14406837 | 282..3609 | 100 | <- | Minus |
3L | 14409615..14409895 | 1..281 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14403510..14406837 | 282..3609 | 100 | <- | Minus |
3L | 14409615..14409895 | 1..281 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14403510..14406837 | 282..3609 | 100 | <- | Minus |
3L | 14409615..14409895 | 1..281 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 14402715..14402995 | 1..281 | 100 | Minus | |
arm_3L | 14396610..14399937 | 282..3609 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14396610..14399937 | 282..3609 | 100 | <- | Minus |
3L | 14402715..14402995 | 1..281 | 100 | Minus |
Translation from 133 to 3246
> LD17962.pep MSAASEVNLMLLRSVEKQTALYDRTDENYRKRLPSENAWDMVASEVGESV EKCKRRWRQLRNDYTRWCNADANRRRNGQRRLAYPLADELRFLDRHLNIA DDMAADDDRSVSSDKDRDNNRDSEGVDHHAQASLKERASSTSKLVKEVKL ASQVRKEKSSQDKRENWENPGDKQRSRKKSAEEKLNDLEESDEPEKVPEL DSFLQSDNEDDECMDEEHLEDLEGFDFDLEQSNQEKELTPEKSLEKNNTD STVSQPEFFVKQTRDPRLLIIGRKNSTSSFAESKASKSISGDPLETAMED SGDEYGRDGEKRVTGSDTTSPTRRPRRAARASISFAGIRDLPIQKPGQAQ RMTRLQRRKSMSLAAVHSVRSSTSPVKMTPVPRSQPINKPPSGPVQITKI SHRDDIFPRPAVPSGVVNINQNQLKTQQQQKTLIFPTTDEAIANPQGSGP PQRRSVGRPPKKLPMVQRIVAPETQTKPQSPINTKVLTIGKPTSSVASGN INNIAIKSNVVTSISSSTATTNTITKGTSNNSIKTTENVNVISYSPNSSS TSSSSKATTGASGAVITNIPTTTTAGTSVPVGKSITQLKMTERGTQTGVQ NPFSDNYFLEMIKPQMQEMNPRQKMHFKKKVFQALMETFDDATDFPTSKE LQHFNINTPSGFEHITDPELRLVRELVSMVSAAKVTLIRPPGEATAIATA SRSGIAPEVQRGPRTNMTRQVIQRVYKPGTGQEIAPTSPAGGLDKRLFRL AAMGGKPNGNLSATQEILRKDSVDSNHSVVKVANHAPTGSPKGAAVVAAI RPQGSLINSFFGQGNGPTTAKGAASENIRAMSRRYSVCGSSNPPNAQNAS QGSANGSTINSNASAMEASMLKRRLIAAGHGMVPPTQRPRYSAVGASQMT TASQGSSLLVRKSVGCVPAYQKQISPTGGASLLQKTPQIASVQGSAFNDF AQPKPAATASVNGEESSPTSALKRSLVVANTKTSFQDLLQQASQTVQRNK IESSETAATIAADDFSLDNLKREPVDPAEDHNDILGV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25200-PA | 960 | GF25200-PA | 7..960 | 8..1037 | 1819 | 45.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13727-PA | 1013 | GG13727-PA | 1..1013 | 1..1037 | 3603 | 74.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14459-PA | 1131 | GH14459-PA | 620..1131 | 584..1037 | 656 | 37.5 | Plus |
Dgri\GH17278-PA | 1057 | GH17278-PA | 534..1057 | 565..1037 | 653 | 36.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
stwl-PC | 1037 | CG3836-PC | 1..1037 | 1..1037 | 5249 | 100 | Plus |
stwl-PA | 1037 | CG3836-PA | 1..1037 | 1..1037 | 5249 | 100 | Plus |
stwl-PB | 999 | CG3836-PB | 12..999 | 50..1037 | 5002 | 99.9 | Plus |
CG3919-PB | 302 | CG3919-PB | 17..212 | 7..228 | 158 | 23 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13601-PA | 1007 | GI13601-PA | 203..1007 | 231..1037 | 873 | 35.4 | Plus |
Dmoj\GI11704-PA | 367 | GI11704-PA | 37..123 | 7..97 | 155 | 33 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14495-PA | 933 | GL14495-PA | 2..933 | 69..1037 | 1197 | 39 | Plus |
Dper\GL21760-PA | 736 | GL21760-PA | 103..736 | 323..1037 | 529 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17720-PA | 1002 | GA17720-PA | 1..1002 | 1..1037 | 1447 | 40.3 | Plus |
Dpse\GA23989-PA | 581 | GA23989-PA | 139..581 | 566..1037 | 463 | 34.3 | Plus |
Dpse\GA22501-PA | 411 | GA22501-PA | 9..411 | 603..1037 | 459 | 35.3 | Plus |
Dpse\GA23988-PA | 685 | GA23988-PA | 265..685 | 566..1037 | 345 | 30.6 | Plus |
Dpse\GA26391-PB | 597 | GA26391-PB | 274..597 | 662..1037 | 179 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24548-PA | 636 | GM24548-PA | 1..627 | 1..630 | 2805 | 86.1 | Plus |
Dsec\GM24549-PA | 271 | GM24549-PA | 1..271 | 767..1037 | 1243 | 87.8 | Plus |
Dsec\GM25465-PA | 306 | GM25465-PA | 25..108 | 7..97 | 155 | 34.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12621-PA | 172 | GD12621-PA | 1..172 | 866..1037 | 805 | 89.5 | Plus |
Dsim\GD17573-PA | 52 | GD17573-PA | 1..51 | 1..51 | 250 | 92.2 | Plus |
Dsim\GD17574-PA | 52 | GD17574-PA | 1..51 | 1..51 | 250 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13939-PA | 1077 | GJ13939-PA | 2..1077 | 3..1037 | 1174 | 36.1 | Plus |
Dvir\GJ11378-PA | 358 | GJ11378-PA | 37..123 | 7..97 | 157 | 33 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10331-PA | 1064 | GK10331-PA | 4..337 | 6..384 | 588 | 38.9 | Plus |
Translation from 133 to 3246
> LD17962.hyp MSAASEVNLMLLRSVEKQTALYDRTDENYRKRLPSENAWDMVASEVGESV EKCKRRWRQLRNDYTRWCNADANRRRNGQRRLAYPLADELRFLDRHLNIA DDMAADDDRSVSSDKDRDNNRDSEGVDHHAQASLKERASSTSKLVKEVKL ASQVRKEKSSQDKRENWENPGDKQRSRKKSAEEKLNDLEESDEPEKVPEL DSFLQSDNEDDECMDEEHLEDLEGFDFDLEQSNQEKELTPEKSLEKNNTD STVSQPEFFVKQTRDPRLLIIGRKNSTSSFAESKASKSISGDPLETAMED SGDEYGRDGEKRVTGSDTTSPTRRPRRAARASISFAGIRDLPIQKPGQAQ RMTRLQRRKSMSLAAVHSVRSSTSPVKMTPVPRSQPINKPPSGPVQITKI SHRDDIFPRPAVPSGVVNINQNQLKTQQQQKTLIFPTTDEAIANPQGSGP PQRRSVGRPPKKLPMVQRIVAPETQTKPQSPINTKVLTIGKPTSSVASGN INNIAIKSNVVTSISSSTATTNTITKGTSNNSIKTTENVNVISYSPNSSS TSSSSKATTGASGAVITNIPTTTTAGTSVPVGKSITQLKMTERGTQTGVQ NPFSDNYFLEMIKPQMQEMNPRQKMHFKKKVFQALMETFDDATDFPTSKE LQHFNINTPSGFEHITDPELRLVRELVSMVSAAKVTLIRPPGEATAIATA SRSGIAPEVQRGPRTNMTRQVIQRVYKPGTGQEIAPTSPAGGLDKRLFRL AAMGGKPNGNLSATQEILRKDSVDSNHSVVKVANHAPTGSPKGAAVVAAI RPQGSLINSFFGQGNGPTTAKGAASENIRAMSRRYSVCGSSNPPNAQNAS QGSANGSTINSNASAMEASMLKRRLIAAGHGMVPPTQRPRYSAVGASQMT TASQGSSLLVRKSVGCVPAYQKQISPTGGASLLQKTPQIASVQGSAFNDF AQPKPAATASVNGEESSPTSALKRSLVVANTKTSFQDLLQQASQTVQRNK IESSETAATIAADDFSLDNLKREPVDPAEDHNDILGV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
stwl-PC | 1037 | CG3836-PC | 1..1037 | 1..1037 | 5249 | 100 | Plus |
stwl-PA | 1037 | CG3836-PA | 1..1037 | 1..1037 | 5249 | 100 | Plus |
stwl-PB | 999 | CG3836-PB | 12..999 | 50..1037 | 5002 | 99.9 | Plus |
CG3919-PB | 302 | CG3919-PB | 17..212 | 7..228 | 158 | 23 | Plus |