BDGP Sequence Production Resources |
Search the DGRC for LD17963
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 179 |
Well: | 63 |
Vector: | pBS SK- |
Associated Gene/Transcript | CG40196-RB |
Protein status: | LD17963.pep: validated full length |
Sequenced Size: | 1062 |
Gene | Date | Evidence |
---|---|---|
CG40196 | 2004-03-31 | Blastp of sequenced clone |
CG40196 | 2008-04-29 | Release 5.5 accounting |
1062 bp (1062 high quality bases) assembled on 2004-03-31
GenBank Submission: BT012488
> LD17963.complete ATTTCACGGAAGGCGAATATACATTTATTTTTTAAGGATCAGCAAAGGAT AGCAAACGCAAGAACGATGCTCAGACTTTTTAAATCGGAGCGAATGCTAG CTTGCCTGTTTTATATGCAAATACTTCAAGGAAGATATATTATAAATCAA CAAAACTTGATAAGACACAATTCTGCGTAATTCTATATATTGTAACGCTA TCGATGACTTAAATTTATATGTATCATTTAAATTTAATTTATAAATCATG AAGTTACTTGAAAGTTCACGTTTTGAGGCTATCAACAACGCTCTTTCTAT ACAAACAAGTGGCATCACGATTTTTGGACGGATAGAAAGTTACTCATGCA AAATGGTTGCGGCCGAGAAAGTATTGTATAAACGATTTACAGCAGATTCT CATGGGCATGACCTTCAGGCGTTATCACCTCCACAAACTTTGGCTGACTT TTCACCAAACTTTCGTCGAAACAACAGTCAATCTGGAGATGAAGGCATTA CTCTTTGCGATACCATTTCCAGAAAAACATTATTTTATTTAATTGCTACT TTAAATGCGTCTTTTGAACCAGACTACGATTTTTCTGAAGCAAAGTCCCA TGAATTTAGCAAAGAGCCGTCATTGCAGTGGGTTATGAACTCAATCCATG CAAATTTATCGGCATTAGCGGGAGATCAGTATCAAGCTATACGTCAACCA TTATGGTCTGCAGTTGACGACGAAGTGATCCTATCAGAGTGTGACATATA CAGTTATAATCCAGATCTAAGTTGCGATCCTTTTGGCGAACCAGGCTGCT TGTGGTCATTTAATTATTTCTTTTATAATAAGAAATTAAAACGAATTGTT TTTTTTACAAGTCGAGCAGTGAATTCTCTTTACGCCGGTGAAACCTTACC CTTTTCGATGGAAGAAGAAGTGTACTGAGAAAGTGTTTACACCAGTTTAA AAAATTTTCTAAATTTATTGGAGATGCCAAAATGTTTTAAGATGTTATTA TATTTTAGAGCTTCTCTTTTATTATTAAACGTATCTTTAAATAAAAAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG40196-RB | 1399 | CG40196-RB | 239..1287 | 1..1044 | 5130 | 99.4 | Plus |
CG40196-RA | 1269 | CG40196-RA | 109..1157 | 1..1044 | 5130 | 99.4 | Plus |
CG40196.a | 2371 | CG40196.a | 109..1157 | 1..1044 | 5130 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrU | 10048995 | chrU | 3448788..3449135 | 1..348 | 1740 | 100 | Plus |
chrU | 10048995 | chrU | 1092217..1092498 | 873..592 | 1395 | 99.6 | Minus |
chrU | 10048995 | chrU | 3449186..3449433 | 348..595 | 1240 | 100 | Plus |
chrU | 10048995 | chrU | 1092549..1092796 | 595..348 | 1240 | 100 | Minus |
chrU | 10048995 | chrU | 1097660..1097869 | 210..1 | 1050 | 100 | Minus |
chrU | 10048995 | chrU | 1091995..1092163 | 1042..874 | 845 | 100 | Minus |
chrU | 10048995 | chrU | 1092847..1092989 | 348..206 | 715 | 100 | Minus |
chrU | 10048995 | chrU | 3449484..3449614 | 592..722 | 655 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CR41604-RD | 940 | CR41604-RD | 223..940 | 1..718 | 3590 | 100 | Plus |
CR41604-RC | 909 | CR41604-RC | 192..909 | 1..718 | 3590 | 100 | Plus |
CR41604-RB | 716 | CR41604-RB | 1..716 | 3..718 | 3580 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 1515890..1516171 | 873..592 | 1395 | 99.6 | Minus |
2R | 25286936 | 2R | 1516222..1516469 | 595..348 | 1240 | 100 | Minus |
2R | 25286936 | 2R | 1521333..1521542 | 210..1 | 1050 | 100 | Minus |
2R | 25286936 | 2R | 1515666..1515836 | 1044..874 | 855 | 100 | Minus |
2R | 25286936 | 2R | 1516520..1516662 | 348..206 | 715 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 1515890..1516171 | 873..592 | 1395 | 99.6 | Minus |
2R | 25260384 | 2R | 1516222..1516469 | 595..348 | 1240 | 100 | Minus |
2R | 25260384 | 2R | 1521333..1521542 | 210..1 | 1050 | 100 | Minus |
2R | 25260384 | 2R | 1515666..1515836 | 1044..874 | 855 | 100 | Minus |
2R | 25260384 | 2R | 1516520..1516662 | 348..206 | 715 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pogo | 2121 | pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). | 1784..1995 | 57..268 | 124 | 55 | Plus |
Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 6413..6471 | 859..801 | 123 | 71.7 | Minus |
P-element | 2907 | P-element PPI251 2907bp AKA(V01520,X69493) Derived from X06779 (g58305) (Rel. 49, Last updated, Version 8). | 1966..2107 | 274..135 | 120 | 57.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrU | 3448788..3449135 | 1..348 | 100 | -> | Plus |
chrU | 3449187..3449433 | 349..595 | 100 | -> | Plus |
chrU | 3449488..3449614 | 596..722 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG40196-RB | 1..681 | 248..928 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG40196-RB | 1..681 | 248..928 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Maf1-RC | 1..681 | 248..928 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG40196-RB | 1..681 | 248..928 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Maf1-RB | 1..681 | 248..928 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CR41604-RC | 192..909 | 1..718 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG40196-RB | 1..1047 | 1..1042 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG40196-RB | 239..1285 | 1..1042 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Maf1-RA | 109..1155 | 1..1042 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG40196-RB | 1..1047 | 1..1042 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Maf1-RA | 109..1155 | 1..1042 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 1516520..1516661 | 207..348 | 100 | <- | Minus |
2R | 1516222..1516468 | 349..595 | 100 | <- | Minus |
2R | 1515890..1516167 | 596..873 | 99 | <- | Minus |
2R | 1515668..1515836 | 874..1042 | 100 | <- | Minus |
2R | 1521332..1521542 | 1..206 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 1516520..1516661 | 207..348 | 100 | <- | Minus |
2R | 1516222..1516468 | 349..595 | 100 | <- | Minus |
2R | 1515890..1516167 | 596..873 | 99 | <- | Minus |
2R | 1515668..1515836 | 874..1042 | 100 | <- | Minus |
2R | 1521332..1521542 | 1..206 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 1516520..1516661 | 207..348 | 100 | <- | Minus |
2R | 1516222..1516468 | 349..595 | 100 | <- | Minus |
2R | 1515890..1516167 | 596..873 | 99 | <- | Minus |
2R | 1515668..1515836 | 874..1042 | 100 | <- | Minus |
2R | 1521332..1521542 | 1..206 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ArmU | 3449483..3449609 | 596..722 | 100 | == | Plus |
ArmU | 3448783..3449130 | 1..348 | 100 | -> | Plus |
ArmU | 3449182..3449428 | 349..595 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 1515890..1516167 | 596..873 | 99 | <- | Minus |
2R | 1516222..1516468 | 349..595 | 100 | <- | Minus |
2R | 1516520..1516661 | 207..348 | 100 | <- | Minus |
2R | 1521332..1521542 | 1..206 | 97 | Minus | |
2R | 1515668..1515836 | 874..1042 | 100 | <- | Minus |
Translation from 247 to 927
> LD17963.pep MKLLESSRFEAINNALSIQTSGITIFGRIESYSCKMVAAEKVLYKRFTAD SHGHDLQALSPPQTLADFSPNFRRNNSQSGDEGITLCDTISRKTLFYLIA TLNASFEPDYDFSEAKSHEFSKEPSLQWVMNSIHANLSALAGDQYQAIRQ PLWSAVDDEVILSECDIYSYNPDLSCDPFGEPGCLWSFNYFFYNKKLKRI VFFTSRAVNSLYAGETLPFSMEEEVY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13945-PA | 226 | GF13945-PA | 1..226 | 1..226 | 1155 | 95.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23116-PA | 226 | GG23116-PA | 1..226 | 1..226 | 1194 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13563-PA | 2938 | GH13563-PA | 1..208 | 1..208 | 1059 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Maf1-PE | 226 | CG40196-PE | 1..226 | 1..226 | 1182 | 99.6 | Plus |
Maf1-PD | 226 | CG40196-PD | 1..226 | 1..226 | 1182 | 99.6 | Plus |
Maf1-PB | 226 | CG40196-PB | 1..226 | 1..226 | 1182 | 99.6 | Plus |
Maf1-PC | 226 | CG40196-PC | 1..226 | 1..226 | 1182 | 99.6 | Plus |
Maf1-PA | 226 | CG40196-PA | 1..226 | 1..226 | 1182 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19510-PA | 226 | GI19510-PA | 1..226 | 1..226 | 1116 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18984-PA | 51 | GL18984-PA | 1..40 | 1..40 | 178 | 87.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23260-PA | 226 | GM23260-PA | 1..226 | 1..226 | 1205 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21993-PA | 226 | GJ21993-PA | 1..226 | 1..226 | 1124 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23514-PA | 225 | GK23514-PA | 1..223 | 1..223 | 1100 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20780-PA | 226 | GE20780-PA | 1..226 | 1..226 | 1194 | 98.7 | Plus |
Translation from 247 to 721
> LD17963.hyp MKLLESSRFEAINNALSIQTSGITIFGRIESYSCKMVAAEKVLYKRFTAD SHGHDLQALSPPQTLADFSPNFRRNNSQSGDEGITLCDTISRKTLFYLIA TLNASFEPDYDFSEAKSHEFSKEPSLQWVMNSIHANLSALAGDQYQAIRQ PLWSAVDD
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Maf1-PE | 226 | CG40196-PE | 1..158 | 1..158 | 809 | 99.4 | Plus |
Maf1-PD | 226 | CG40196-PD | 1..158 | 1..158 | 809 | 99.4 | Plus |
Maf1-PB | 226 | CG40196-PB | 1..158 | 1..158 | 809 | 99.4 | Plus |
Maf1-PC | 226 | CG40196-PC | 1..158 | 1..158 | 809 | 99.4 | Plus |
Maf1-PA | 226 | CG40196-PA | 1..158 | 1..158 | 809 | 99.4 | Plus |