Clone LD17982 Report

Search the DGRC for LD17982

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:179
Well:82
Vector:pBS SK-
Associated Gene/TranscriptAtac2-RA
Protein status:LD17982.pep: gold
Preliminary Size:2416
Sequenced Size:2445

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10414 2001-01-01 Release 2 assignment
CG10414 2002-05-23 Blastp of sequenced clone
CG10414 2003-01-01 Sim4 clustering to Release 3
CG10414 2008-04-29 Release 5.5 accounting
CG10414 2008-08-15 Release 5.9 accounting
CG10414 2008-12-18 5.12 accounting

Clone Sequence Records

LD17982.complete Sequence

2445 bp (2445 high quality bases) assembled on 2002-05-23

GenBank Submission: AY118521

> LD17982.complete
CACAAACAACACATTATTTTGTTGATTGTTTTTAACTTGCAATTTGTGCT
GTTTTACTGAGTAAATGAATCGGCCCAGTAACTGGGATGATCCCCAGGGA
CCATGCCGCTACTGTGAATCGCCGGTGGAGGACGACAACTACCTGGAGTG
CCAGGAATGCAGGCGGATGGTTCACATCAAATGCCTGCCGCATGCTTGCA
CGCCCGGAGATCTTTTAGGCGACGTTTTCTTCGAGTTCACGTGCGTCAAG
TGTGTGCTGGATAAAGCTAAGGAATCGGTCATACCCTCAGATCTAGAACC
CATTAAGGAAGTGATCGTGCGCCAAAGGATACCTTGGCTGCTGGTGCTCA
CCCTAACGCTCTACAATCTGTCCATCAAACAAAAGGGCTTGGGACACCAT
GGATTCTTCCATTGGCGCACGCACATCATCAGTTTTGTGGACAAGAACTG
GAACTATATATTCGGTCCCAATGTGCGGCGTCGCAAGCAATGGACTGGTT
CCGTATCCGGCGCACTGTCCCACAACAGTCCGGAGTACTTTCAGTCTGGT
CTGGATGTCTTTCAGGAGAACGGCTGGTGGAAACTGGCCAAGCCCTTTCA
AACCCCAAGAAGCGTTCTCAAAGAATATGAGAAAAAGCAACAGTTGCGGC
TACAAATGCGTATTGAAAAGCGGTTGCCTGCAGCGGACGAGACCAGCTGT
AGCAGCGAGATCTCAGTGGCGGATCATGCCCAGGATAACCCACCGCTTAT
TAAAGCAGAAGCTGAGAAACCCAGTTCAACAGAGGGCTGTGCGCGAACAA
TTCCCTACATGGGCCGTTTGCCAAAGATACAAACACAACCTTCACCCTTG
TCACAGGAAACGCTTCCAGGGCCACCAATTCTTCAAGAAAATATAGCGCC
ACCAAGTCAGAAGGAGGAAGAACCACAGAATCAGCCTATGAGCATGGTCC
AAGCAGGCCTGATGGATTTTCTGGCTGAAAGTTTGGAAAGCGATGATTTT
ACCATGTTTGGTAACCTACCAGGCATAATGCCCCCACCCCTGATTGGAGC
GGGTAAAAATGATTTCTTCATGACCGAGCCGTTGCTTCACGCACCTTTGA
ATAATGAAGGTCTTTTCGACATGGATACAAATTTTGCCATACCAAATACC
GCTGATGAGACCAAACCCATATCAACAGAAGAACCTGCAGCCGAAAGCAG
CGAGGAACAAAAAGAAGGCGAGGTAGAAGATGAAAAGCCAGAAGAGGACG
AATCACCCGACTATCAGCCACGCATCGTACAGGTTACAAATTACCAGGCG
CAAGAGGCAAACGAAAGCATCAAAGAGGAACCACTAGAAGAGATAATGCA
AGATGATGACGTCACGACAAATAGCAAATCCTCTATCCTAGAGCCTTGCA
AACCGAGTGGATTTGTCAGACAACCACGGCGAAATTGGCCCTGGTTGCAG
GAGGCGCAGGATCCCGATGACATGGCCATTCCTAGCGAAAATCTCAAACT
AATAAATGCATACGAAGAACAGAAGTTGTACCAGCGACTCGATAGAATAT
TCGCACTGGAGCATCAGTGCCACATATCCATACCTGCCTATGTGCGGCGC
CTATATCGAAAACTTTCTCTTCGAAAATGGAAAAGGGACCACAATCGACA
CATATTTAACTTGGACGAGCACATAGATCCCCTGGGAAGAGCACGCCTAA
AGATGCTGGGTCATCAGAAGGCCGAAATTCTTGACAGATATCAGTTGTTA
GCCCATTCACGACAAGATGCAAGGAGCTCCTTTCACGCCCGCCTGGCGGG
ATGCACTCAATACGAGCTCTTTGAATCGCCCTACTCTCAAAGAGTTCTTC
ATCCATTTATCTTTCGGAGCGAAACGATGGCTCCTCCATGGCTGAAGCTT
ATGTGCGAGCTGCAGCATAGAGTAAACGGATCTCATCCCACAAGATCTAC
CATCGACTTCTGTTTTGTGAGACCGCAGCATATTCCGGCCGTAAACGCAT
TACTCCAAAGTACTTTTTGGCCAAACATTGATGTAAGCGAGTGTTTGAGC
TACCCGGACTACAGTGTAGTGGCGTTGTACAAGAAACTGGTCATCGGTTG
CGGATTCCTAGTGCCCGACGTAGGTTACAACGAGGCCTACATCTCATTCA
TGGCGGTGCGGCCGTGCTGGCAACGCAGTGGCATCGCCAGCTTCATGTTA
TATCACCTTATCCAGACATGTATGTCCAAGGACATAACGTTGCACGTTTC
CGCCACCAACGCGGCCGTCATGTTGTACCAGAAATTCGGATTTAAGATGG
AGGAAATCATCTTGGACTTTTATGACAAGTATCTGCCTCTGGACTCGAAA
CAGAGCAGAAATGCCTTCTTTTTGAGATTACAAAGATGAGACTTTTTTCA
AATAAATGGTTTATGAATCTAAAAAAAAAAAAAAAAAAAAAAAAA

LD17982.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10414-RA 2445 CG10414-RA 22..2444 1..2423 12115 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18608739..18609970 2033..802 5980 99 Minus
chr2L 23010047 chr2L 18610478..18610952 475..1 2375 100 Minus
chr2L 23010047 chr2L 18608286..18608673 2420..2033 1910 99.5 Minus
chr2L 23010047 chr2L 18610037..18610211 801..627 875 100 Minus
chr2L 23010047 chr2L 18610267..18610418 626..475 760 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:05:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18610029..18611260 2033..802 6160 100 Minus
2L 23513712 2L 18611768..18612242 475..1 2375 100 Minus
2L 23513712 2L 18609573..18609963 2423..2033 1955 100 Minus
2L 23513712 2L 18611327..18611501 801..627 875 100 Minus
2L 23513712 2L 18611557..18611708 626..475 760 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18610029..18611260 2033..802 6160 100 Minus
2L 23513712 2L 18611768..18612242 475..1 2375 100 Minus
2L 23513712 2L 18609573..18609963 2423..2033 1955 100 Minus
2L 23513712 2L 18611327..18611501 801..627 875 100 Minus
2L 23513712 2L 18611557..18611708 626..475 760 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:23:31 has no hits.

LD17982.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:24:41 Download gff for LD17982.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18608286..18608672 2034..2420 99 <- Minus
chr2L 18608739..18609970 802..2033 99 <- Minus
chr2L 18610037..18610211 627..801 100 <- Minus
chr2L 18610267..18610418 475..626 100 <- Minus
chr2L 18610479..18610952 1..474 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:52:35 Download gff for LD17982.complete
Subject Subject Range Query Range Percent Splice Strand
CG10414-RA 1..2325 65..2389 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:38:20 Download gff for LD17982.complete
Subject Subject Range Query Range Percent Splice Strand
CG10414-RA 1..2325 65..2389 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:13:44 Download gff for LD17982.complete
Subject Subject Range Query Range Percent Splice Strand
Atac2-RA 1..2325 65..2389 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:01 Download gff for LD17982.complete
Subject Subject Range Query Range Percent Splice Strand
CG10414-RA 1..2325 65..2389 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:18 Download gff for LD17982.complete
Subject Subject Range Query Range Percent Splice Strand
Atac2-RA 1..2325 65..2389 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:11:11 Download gff for LD17982.complete
Subject Subject Range Query Range Percent Splice Strand
CG10414-RA 1..2420 1..2420 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:38:20 Download gff for LD17982.complete
Subject Subject Range Query Range Percent Splice Strand
CG10414-RA 1..2420 1..2420 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:44 Download gff for LD17982.complete
Subject Subject Range Query Range Percent Splice Strand
Atac2-RA 8..2427 1..2420 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:01 Download gff for LD17982.complete
Subject Subject Range Query Range Percent Splice Strand
CG10414-RA 1..2420 1..2420 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:18 Download gff for LD17982.complete
Subject Subject Range Query Range Percent Splice Strand
Atac2-RA 8..2427 1..2420 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:24:41 Download gff for LD17982.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18609576..18609962 2034..2420 100 <- Minus
2L 18610029..18611260 802..2033 100 <- Minus
2L 18611327..18611501 627..801 100 <- Minus
2L 18611557..18611708 475..626 100 <- Minus
2L 18611769..18612242 1..474 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:24:41 Download gff for LD17982.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18609576..18609962 2034..2420 100 <- Minus
2L 18610029..18611260 802..2033 100 <- Minus
2L 18611327..18611501 627..801 100 <- Minus
2L 18611557..18611708 475..626 100 <- Minus
2L 18611769..18612242 1..474 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:24:41 Download gff for LD17982.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18609576..18609962 2034..2420 100 <- Minus
2L 18610029..18611260 802..2033 100 <- Minus
2L 18611327..18611501 627..801 100 <- Minus
2L 18611557..18611708 475..626 100 <- Minus
2L 18611769..18612242 1..474 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:44 Download gff for LD17982.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18609576..18609962 2034..2420 100 <- Minus
arm_2L 18610029..18611260 802..2033 100 <- Minus
arm_2L 18611327..18611501 627..801 100 <- Minus
arm_2L 18611557..18611708 475..626 100 <- Minus
arm_2L 18611769..18612242 1..474 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:02:36 Download gff for LD17982.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18609576..18609962 2034..2420 100 <- Minus
2L 18610029..18611260 802..2033 100 <- Minus
2L 18611327..18611501 627..801 100 <- Minus
2L 18611557..18611708 475..626 100 <- Minus
2L 18611769..18612242 1..474 100   Minus

LD17982.pep Sequence

Translation from 64 to 2388

> LD17982.pep
MNRPSNWDDPQGPCRYCESPVEDDNYLECQECRRMVHIKCLPHACTPGDL
LGDVFFEFTCVKCVLDKAKESVIPSDLEPIKEVIVRQRIPWLLVLTLTLY
NLSIKQKGLGHHGFFHWRTHIISFVDKNWNYIFGPNVRRRKQWTGSVSGA
LSHNSPEYFQSGLDVFQENGWWKLAKPFQTPRSVLKEYEKKQQLRLQMRI
EKRLPAADETSCSSEISVADHAQDNPPLIKAEAEKPSSTEGCARTIPYMG
RLPKIQTQPSPLSQETLPGPPILQENIAPPSQKEEEPQNQPMSMVQAGLM
DFLAESLESDDFTMFGNLPGIMPPPLIGAGKNDFFMTEPLLHAPLNNEGL
FDMDTNFAIPNTADETKPISTEEPAAESSEEQKEGEVEDEKPEEDESPDY
QPRIVQVTNYQAQEANESIKEEPLEEIMQDDDVTTNSKSSILEPCKPSGF
VRQPRRNWPWLQEAQDPDDMAIPSENLKLINAYEEQKLYQRLDRIFALEH
QCHISIPAYVRRLYRKLSLRKWKRDHNRHIFNLDEHIDPLGRARLKMLGH
QKAEILDRYQLLAHSRQDARSSFHARLAGCTQYELFESPYSQRVLHPFIF
RSETMAPPWLKLMCELQHRVNGSHPTRSTIDFCFVRPQHIPAVNALLQST
FWPNIDVSECLSYPDYSVVALYKKLVIGCGFLVPDVGYNEAYISFMAVRP
CWQRSGIASFMLYHLIQTCMSKDITLHVSATNAAVMLYQKFGFKMEEIIL
DFYDKYLPLDSKQSRNAFFLRLQR*

LD17982.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14837-PA 763 GF14837-PA 3..763 11..774 2877 70.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21701-PA 774 GG21701-PA 1..774 1..774 3734 90.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10527-PA 275 GH10527-PA 13..259 14..262 867 64.3 Plus
Dgri\GH10528-PA 162 GH10528-PA 1..162 613..774 808 90.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
Atac2-PA 774 CG10414-PA 1..774 1..774 4156 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17195-PA 780 GI17195-PA 1..780 1..774 2493 63.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18740-PA 758 GL18740-PA 14..758 14..774 2430 62 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10303-PA 797 GA10303-PA 14..797 14..774 2640 65.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17081-PA 774 GM17081-PA 1..774 1..774 3918 94.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21826-PA 774 GD21826-PA 1..774 1..774 3930 94.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19801-PA 776 GJ19801-PA 4..776 5..774 2440 62.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24653-PA 749 GK24653-PA 3..749 14..774 2656 66.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12724-PA 775 GE12724-PA 1..775 1..774 3784 89.9 Plus

LD17982.hyp Sequence

Translation from 64 to 2388

> LD17982.hyp
MNRPSNWDDPQGPCRYCESPVEDDNYLECQECRRMVHIKCLPHACTPGDL
LGDVFFEFTCVKCVLDKAKESVIPSDLEPIKEVIVRQRIPWLLVLTLTLY
NLSIKQKGLGHHGFFHWRTHIISFVDKNWNYIFGPNVRRRKQWTGSVSGA
LSHNSPEYFQSGLDVFQENGWWKLAKPFQTPRSVLKEYEKKQQLRLQMRI
EKRLPAADETSCSSEISVADHAQDNPPLIKAEAEKPSSTEGCARTIPYMG
RLPKIQTQPSPLSQETLPGPPILQENIAPPSQKEEEPQNQPMSMVQAGLM
DFLAESLESDDFTMFGNLPGIMPPPLIGAGKNDFFMTEPLLHAPLNNEGL
FDMDTNFAIPNTADETKPISTEEPAAESSEEQKEGEVEDEKPEEDESPDY
QPRIVQVTNYQAQEANESIKEEPLEEIMQDDDVTTNSKSSILEPCKPSGF
VRQPRRNWPWLQEAQDPDDMAIPSENLKLINAYEEQKLYQRLDRIFALEH
QCHISIPAYVRRLYRKLSLRKWKRDHNRHIFNLDEHIDPLGRARLKMLGH
QKAEILDRYQLLAHSRQDARSSFHARLAGCTQYELFESPYSQRVLHPFIF
RSETMAPPWLKLMCELQHRVNGSHPTRSTIDFCFVRPQHIPAVNALLQST
FWPNIDVSECLSYPDYSVVALYKKLVIGCGFLVPDVGYNEAYISFMAVRP
CWQRSGIASFMLYHLIQTCMSKDITLHVSATNAAVMLYQKFGFKMEEIIL
DFYDKYLPLDSKQSRNAFFLRLQR*

LD17982.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
Atac2-PA 774 CG10414-PA 1..774 1..774 4156 100 Plus