BDGP Sequence Production Resources |
Search the DGRC for LD18018
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 180 |
Well: | 18 |
Vector: | pBS SK- |
Associated Gene/Transcript | arx-RA |
Protein status: | LD18018.pep: gold |
Preliminary Size: | 1019 |
Sequenced Size: | 850 |
Gene | Date | Evidence |
---|---|---|
CG3893 | 2001-01-01 | Release 2 assignment |
CG3893 | 2002-04-04 | Blastp of sequenced clone |
CG3893 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3893 | 2008-04-29 | Release 5.5 accounting |
CG3893 | 2008-08-15 | Release 5.9 accounting |
CG3893 | 2008-12-18 | 5.12 accounting |
850 bp (850 high quality bases) assembled on 2002-04-04
GenBank Submission: AY095030
> LD18018.complete AATAACTACGACGAATCCGATATGGTTTATTGCCCGTACAACAAGGAGCA CAAAATGCTGCGCAAGAAGCTCCAGCAGCACATCTTAAAATGCCGTGTGA TCTACAAAGACACGGTGGAACTTATGGTTTGTCCCTTCAATAGTTCCCAT TTGATACCAGAGCCCCAGTTCTTTCAACACACCCAATCGTGCGAGGATCG AAACATTATAGTACACTATCAGACCAGCGCTCCTGCTGTCCTCAGCGAAG ACACCAGACACGCGAAGATCGAGTCCGAGGAGAACTGGGATGACGACGAG AGTGTGCCCGATTACGATCCTCAGGTCTACTGTTCCAGGGCCAACATAGT GAGAGAGCCCAATGGGTTGTTTCCCGCCCAGCGAAGGGCTTTCATCGAGC AGGAAAAACGTCGTCACTTTGGCGAGGATTACGAGGAGGAGAAGAAGCCG CGGAAGGCCAAGGCTCGCGCGGATCTTCGTCCCACTCCCTACGAGCACAG GAGGCCATACTCAAGGCGCCAGTAGTTCGTGTTCATCAAGAATTACTCCC ACTGCCAAAGAACAAAAACCAAAACATTTTATCGGGGCTTATACTCGTTA TTATAACCAAAAAAAACAATTCCACGGCCAAATTGTTAAAATTAACATGT GCTGTGAAACAAGTATTGCTCGCAGTTCAGATGAGCAAATGACAAAATCA ATCTCATATTATTCTGAGATAATGAAAATAACATACATATCCCAAATTCA TGTACATGTGTAAACTATGTGCCTTTTTCCATTAACGACACAGATAATCG TGAAATAAAGCATTTCACTTTGTTTCTTATCAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 1257..1327 | 635..704 | 135 | 70.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 18890222..18890882 | 175..831 | 98 | <- | Minus |
chr3L | 18890951..18891124 | 1..174 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3893-RA | 1..504 | 22..525 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3893-RA | 1..504 | 22..525 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3893-RA | 1..504 | 22..525 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3893-RA | 1..504 | 22..525 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arx-RA | 1..504 | 22..525 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3893-RA | 1..831 | 1..831 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3893-RA | 1..831 | 1..831 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3893-RA | 62..892 | 1..831 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3893-RA | 1..831 | 1..831 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arx-RA | 62..892 | 1..831 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18900595..18901251 | 175..831 | 100 | <- | Minus |
3L | 18901320..18901493 | 1..174 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18900595..18901251 | 175..831 | 100 | <- | Minus |
3L | 18901320..18901493 | 1..174 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18900595..18901251 | 175..831 | 100 | <- | Minus |
3L | 18901320..18901493 | 1..174 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 18894420..18894593 | 1..174 | 100 | Minus | |
arm_3L | 18893695..18894351 | 175..831 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18894420..18894593 | 1..174 | 100 | Minus | |
3L | 18893695..18894351 | 175..831 | 100 | <- | Minus |
Translation from 0 to 524
> LD18018.hyp NNYDESDMVYCPYNKEHKMLRKKLQQHILKCRVIYKDTVELMVCPFNSSH LIPEPQFFQHTQSCEDRNIIVHYQTSAPAVLSEDTRHAKIESEENWDDDE SVPDYDPQVYCSRANIVREPNGLFPAQRRAFIEQEKRRHFGEDYEEEKKP RKAKARADLRPTPYEHRRPYSRRQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
arx-PA | 167 | CG3893-PA | 1..167 | 8..174 | 910 | 100 | Plus |
CG32625-PA | 144 | CG32625-PA | 9..136 | 7..138 | 172 | 28.4 | Plus |
CG34283-PA | 153 | CG34283-PA | 19..147 | 11..138 | 170 | 26.2 | Plus |
Translation from 21 to 524
> LD18018.pep MVYCPYNKEHKMLRKKLQQHILKCRVIYKDTVELMVCPFNSSHLIPEPQF FQHTQSCEDRNIIVHYQTSAPAVLSEDTRHAKIESEENWDDDESVPDYDP QVYCSRANIVREPNGLFPAQRRAFIEQEKRRHFGEDYEEEKKPRKAKARA DLRPTPYEHRRPYSRRQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10800-PA | 175 | GF10800-PA | 9..167 | 1..157 | 621 | 73.1 | Plus |
Dana\GF23650-PA | 163 | GF23650-PA | 17..161 | 1..151 | 184 | 30.5 | Plus |
Dana\GF22344-PA | 154 | GF22344-PA | 18..135 | 2..119 | 160 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13445-PA | 173 | GG13445-PA | 9..169 | 1..161 | 733 | 90.7 | Plus |
Dere\GG19487-PA | 147 | GG19487-PA | 11..135 | 2..126 | 177 | 35.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16964-PA | 173 | GH16964-PA | 1..146 | 1..147 | 540 | 66.7 | Plus |
Dgri\GH14602-PA | 149 | GH14602-PA | 10..148 | 1..135 | 200 | 35 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
arx-PA | 167 | CG3893-PA | 1..167 | 1..167 | 910 | 100 | Plus |
CG32625-PA | 144 | CG32625-PA | 11..136 | 2..131 | 171 | 28.8 | Plus |
CG34283-PA | 153 | CG34283-PA | 19..147 | 4..131 | 170 | 26.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11828-PA | 179 | GI11828-PA | 9..173 | 1..158 | 579 | 66.3 | Plus |
Dmoj\GI13489-PA | 145 | GI13489-PA | 9..140 | 1..131 | 213 | 36.2 | Plus |
Dmoj\GI19179-PA | 179 | GI19179-PA | 40..161 | 2..122 | 153 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15775-PA | 173 | GL15775-PA | 9..170 | 1..166 | 489 | 56.9 | Plus |
Dper\GL19847-PA | 156 | GL19847-PA | 20..149 | 4..131 | 167 | 26.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17756-PA | 167 | GA17756-PA | 1..164 | 1..166 | 570 | 64.5 | Plus |
Dpse\GA26086-PA | 173 | GA26086-PA | 9..170 | 1..166 | 498 | 58.1 | Plus |
Dpse\GA27350-PA | 156 | GA27350-PA | 20..149 | 4..131 | 157 | 26.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14914-PA | 175 | GM14914-PA | 9..175 | 1..167 | 840 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12322-PA | 175 | GD12322-PA | 9..175 | 1..167 | 837 | 94 | Plus |
Dsim\GD23063-PA | 144 | GD23063-PA | 8..139 | 1..131 | 155 | 31.1 | Plus |
Dsim\GD24515-PA | 135 | GD24515-PA | 11..127 | 2..131 | 136 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13528-PA | 171 | GJ13528-PA | 1..165 | 1..158 | 570 | 62.7 | Plus |
Dvir\GJ11850-PA | 148 | GJ11850-PA | 10..146 | 1..135 | 220 | 35.5 | Plus |
Dvir\GJ19312-PA | 164 | GJ19312-PA | 29..159 | 2..131 | 218 | 34.1 | Plus |
Dvir\GJ20240-PA | 173 | GJ20240-PA | 33..163 | 2..131 | 208 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12656-PA | 163 | GK12656-PA | 6..162 | 1..158 | 533 | 62.7 | Plus |
Dwil\GK20915-PA | 156 | GK20915-PA | 9..156 | 1..149 | 518 | 61.7 | Plus |
Dwil\GK16207-PA | 689 | GK16207-PA | 22..126 | 2..105 | 163 | 33 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22548-PA | 162 | GE22548-PA | 1..162 | 1..167 | 709 | 87.4 | Plus |
Dyak\GE22544-PA | 162 | GE22544-PA | 1..162 | 1..167 | 709 | 87.4 | Plus |
Dyak\GE16140-PA | 147 | GE16140-PA | 11..135 | 2..126 | 160 | 33.6 | Plus |