Clone LD18062 Report

Search the DGRC for LD18062

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:180
Well:62
Vector:pBS SK-
Associated Gene/TranscriptCG42516-RA
Protein status:LD18062.pep2: gold LD18062.pep: gold
Preliminary Size:2207
Sequenced Size:1974

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11508 2001-01-01 Release 2 assignment
CG11508 2002-06-06 Blastp of sequenced clone
CG11508 2003-01-01 Sim4 clustering to Release 3
CG11508 2008-04-29 Release 5.5 accounting
Pbp49 2008-08-15 Release 5.9 accounting
Pbp49 2008-12-18 5.12 accounting

Clone Sequence Records

LD18062.complete Sequence

1974 bp (1974 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119595.1

> LD18062.complete
ATTTACCATAGGAAGGAAAGAAGAGGAATGTGCACGCACATTTCTAACAA
GGTTTTGTAAATGGGAATCAGACAAATTATTGTTTAAGGAAGTCATATAT
TGCGAAATAACGCCATCATTCAACCATCAATCAGGGCCCATGCATAACGA
TAAAAGGAGAACATGAACGATTCCTCCGATTCGGAGTACGAGGACACAGA
GTACCTGGTATTTGCGGATTTCAAGAACCACATTCATCCGCACCAGCTGA
AGCACGAGGACGCGGCCATTAAGATCATCGGAATCGAGAGTGACACGCCC
ATGGCCGAGGTAAATGGAAGCATTTATCGGGGACGCTACGAACATTCCGT
GGGAACCAACGTGTTCTTTGAGAAGGAAAAAGACAATCTGGCAAGTGATC
CGCTTTTTGAGTCAGTGTGTCGCCAGCGGTACCAGTACGTGGACAAATCC
ACCAAGGTGATATCTTTTGAAAGGGTCTACGTGGACAATTTGCACCAGGA
GGTGGAGAAGTCGGCTGAGACTGAAGAGGACGATCAGACCGAGCCAAAGC
CAGAATCTCTGAAGCTAAATATAACTTACAAGGAGGCTATTAACAAGTTT
GGAGAAGATCATTGAGTGTGGAGAACTGAGTCTAATCCTGAACAAAAAAC
ACTCTTTCAAGACATACCTCTTAGTACCATGGATACCACCTATATTACAA
CGAATCCAGCTTTAAGCCTGCGAGACTTTCTAGCCGACTATCAAAAGAAA
ATATCCGGTACTGCAGACGAAGTGCCCTTCTTTCTCCAAAAAAACCCAGT
ACTTGTCGACGTGTCTGAAAGCTGTTCCCTGGACTTGATCGAGTCCCCAG
ACGACAGCTCGATTGCAGTCTTCCAGCCCGCCGCAGACAAATGCCGCCCA
ACCTTTTCTCCGCCGCAGGAGAACCAGCATGTGCCCTCCACTTTTACTGC
TCTAAGCCAGCACAAGGACAAGTCCCGTAAGTGTCCCTTTGGCCGCACCC
AGTACAGCCACAAACTGAATCCGACGCCGACAGACTCGCCTAACCTGCAC
ATCGATGCTTGCGGCGAACTGGAGCTAACCGTGCGTCTATATCGACCACC
GCGGGCCTACCATCGCGGGTTTAAGGTGGAGATTCCCGTTTTCGCCGAGG
AGTTCGTATGTCTGGGCAGCAATTATCTGACCGAGCTGCGGGACAAGATC
AGCTGCGTTTGCAATGGAAAACGGTTTGTCGACATCAGCGACGATCCAGA
TGCACCGTTGCCATCCATTGACACAAATCCCGGTTACTTCTTCATCAACG
ACACATTCTACAACGACCAGCGCAATCCGGACAATCCCGACTATTCCAAG
ACCGTCTTGCAGTGGGCTGCCAGAGCGAACGGAGTGAACGGAGAAACGCT
TAAGGTGGAGAGTATGGAGGGCAAAAGATTCATCGATCTCACTGTCAGCC
CCGGATCACCGCTACACTACCTGCACCACGGCAATTGCGAACACCTGTTT
GTGATCTCCCAGGTAGAGGTGCTAACGCCACTTAGTAAACGGCCAGATCG
CAGCCTGTATCCCTATCCTCACGCCTTCAGTACGTTTAATCGCAGGACTT
GCTATATGTGCGGCATTCGCAGCTATAGCTTCATCGTGAACCAGTCCCGG
CGACAGCTGCACGATCCCTCCTACCTGTGCCGCAGATGTTTTCTCAGCTT
CTTTTACGTGGATGGTGTCAAGCTGGGCCAGTTCAAAGCCTATCGCATGT
ATGACCATGTAGAGCTGGAGGGCGAAGAGGAGGACATTAAACAGCAAAAT
CTCCCCTCCTGAATATACATATACATTTGTGTGATTTTTTCTTTATTTGC
GAGCTCCTTTGACTGCAAGATCGCTCAAGGAGTTGATTGATATTTTGTTC
TTGTAAAATATTCATAGATAGATTTAAATAAAATACATACACGTTGCAAC
AAGAAAAAAAAAAAAAAAAAAAAA

LD18062.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG42516-RA 1979 CG42516-RA 27..1979 1..1953 9765 100 Plus
Pbp49-RA 1979 Pbp49-RA 27..1979 1..1953 9765 100 Plus
Pbp49-RB 1896 Pbp49-RB 76..1896 133..1953 9105 100 Plus
Pbp49-RB 1896 Pbp49-RB 27..78 1..52 260 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4016843..4018789 1953..1 9595 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:05:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8129353..8131306 1954..1 9770 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8130552..8132505 1954..1 9770 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:40:08 has no hits.

LD18062.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:41:00 Download gff for LD18062.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4016843..4018789 1..1953 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:52:40 Download gff for LD18062.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp49-RC 1..434 163..596 100 == Plus
Pbp49-RC 435..1572 675..1812 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:30:46 Download gff for LD18062.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp49-RB 1..1134 679..1812 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:21:42 Download gff for LD18062.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp49-RA 1..1134 679..1812 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:20:55 Download gff for LD18062.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp49-RC 1..434 163..596 100 == Plus
Pbp49-RC 435..1572 675..1812 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:09:09 Download gff for LD18062.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp49-RA 1..1134 679..1812 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:00:36 Download gff for LD18062.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp49-RA 27..1979 1..1953 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:30:46 Download gff for LD18062.complete
Subject Subject Range Query Range Percent Splice Strand
CG42516-RA 27..1979 1..1953 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:21:42 Download gff for LD18062.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp49-RA 18..1970 1..1953 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:20:55 Download gff for LD18062.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp49-RA 27..1979 1..1953 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:09:09 Download gff for LD18062.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp49-RA 18..1970 1..1953 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:41:00 Download gff for LD18062.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8129354..8131306 1..1953 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:41:00 Download gff for LD18062.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8129354..8131306 1..1953 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:41:00 Download gff for LD18062.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8129354..8131306 1..1953 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:21:42 Download gff for LD18062.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4016859..4018811 1..1953 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:54:39 Download gff for LD18062.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8130553..8132505 1..1953 100   Minus

LD18062.pep2 Sequence

Translation from 162 to 614

> LD18062.pep2
MNDSSDSEYEDTEYLVFADFKNHIHPHQLKHEDAAIKIIGIESDTPMAEV
NGSIYRGRYEHSVGTNVFFEKEKDNLASDPLFESVCRQRYQYVDKSTKVI
SFERVYVDNLHQEVEKSAETEEDDQTEPKPESLKLNITYKEAINKFGEDH
*

LD18062.pep2 Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11210-PA 521 GF11210-PA 1..135 1..137 483 66.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10673-PA 150 GG10673-PA 1..150 1..150 736 92 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19984-PA 146 GH19984-PA 1..146 1..150 505 63.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG42516-PC 150 CG42516-PC 1..150 1..150 789 100 Plus
CG42516-PB 150 CG42516-PB 1..150 1..150 789 100 Plus
CG42516-PA 150 CG42516-PA 1..150 1..150 789 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20271-PA 145 GI20271-PA 4..144 5..149 521 66.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25000-PA 150 GL25000-PA 1..150 1..150 523 66.9 Plus
Dper\GL17380-PA 537 GL17380-PA 1..148 1..148 478 65.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23584-PA 150 GA23584-PA 1..150 1..150 523 66.9 Plus
Dpse\GA11041-PA 538 GA11041-PA 1..144 1..144 477 66.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20720-PA 150 GM20720-PA 1..150 1..150 779 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10186-PA 151 GD10186-PA 1..150 1..150 777 97.3 Plus
Dsim\GD10187-PA 150 GD10187-PA 1..150 1..150 776 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20224-PA 145 GJ20224-PA 1..145 1..149 516 65.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23044-PA 148 GK23044-PA 17..148 15..149 425 60 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23282-PA 150 GE23282-PA 1..150 1..150 763 96 Plus

LD18062.hyp Sequence

Translation from 678 to 1811

> LD18062.hyp
MDTTYITTNPALSLRDFLADYQKKISGTADEVPFFLQKNPVLVDVSESCS
LDLIESPDDSSIAVFQPAADKCRPTFSPPQENQHVPSTFTALSQHKDKSR
KCPFGRTQYSHKLNPTPTDSPNLHIDACGELELTVRLYRPPRAYHRGFKV
EIPVFAEEFVCLGSNYLTELRDKISCVCNGKRFVDISDDPDAPLPSIDTN
PGYFFINDTFYNDQRNPDNPDYSKTVLQWAARANGVNGETLKVESMEGKR
FIDLTVSPGSPLHYLHHGNCEHLFVISQVEVLTPLSKRPDRSLYPYPHAF
STFNRRTCYMCGIRSYSFIVNQSRRQLHDPSYLCRRCFLSFFYVDGVKLG
QFKAYRMYDHVELEGEEEDIKQQNLPS*

LD18062.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Pbp49-PB 377 CG42515-PB 1..377 1..377 2038 100 Plus
Pbp49-PA 377 CG42515-PA 1..377 1..377 2038 100 Plus
Pbp49-PD 358 CG42515-PD 1..358 1..377 1891 94.7 Plus

LD18062.pep Sequence

Translation from 678 to 1811

> LD18062.pep
MDTTYITTNPALSLRDFLADYQKKISGTADEVPFFLQKNPVLVDVSESCS
LDLIESPDDSSIAVFQPAADKCRPTFSPPQENQHVPSTFTALSQHKDKSR
KCPFGRTQYSHKLNPTPTDSPNLHIDACGELELTVRLYRPPRAYHRGFKV
EIPVFAEEFVCLGSNYLTELRDKISCVCNGKRFVDISDDPDAPLPSIDTN
PGYFFINDTFYNDQRNPDNPDYSKTVLQWAARANGVNGETLKVESMEGKR
FIDLTVSPGSPLHYLHHGNCEHLFVISQVEVLTPLSKRPDRSLYPYPHAF
STFNRRTCYMCGIRSYSFIVNQSRRQLHDPSYLCRRCFLSFFYVDGVKLG
QFKAYRMYDHVELEGEEEDIKQQNLPS*

LD18062.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11210-PA 521 GF11210-PA 142..503 6..369 1380 69.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10674-PA 384 GG10674-PA 3..384 6..377 1722 85.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19985-PA 392 GH19985-PA 1..372 1..367 1097 57.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
Pbp49-PB 377 CG42515-PB 1..377 1..377 2038 100 Plus
Pbp49-PA 377 CG42515-PA 1..377 1..377 2038 100 Plus
Pbp49-PD 358 CG42515-PD 1..358 1..377 1891 94.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20272-PA 403 GI20272-PA 1..385 1..376 1163 58.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17380-PA 537 GL17380-PA 147..521 1..367 1201 61.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11041-PA 538 GA11041-PA 147..522 1..367 1200 61.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20721-PA 377 GM20721-PA 1..376 1..376 1878 94.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10188-PA 377 GD10188-PA 1..376 1..376 1863 94.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20225-PA 400 GJ20225-PA 1..383 1..375 1208 60.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23045-PA 404 GK23045-PA 10..353 10..359 1084 60.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23290-PA 378 GE23290-PA 1..360 1..360 1756 89.2 Plus