Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LD18062.complete Sequence
1974 bp (1974 high quality bases) assembled on 2002-06-06
GenBank Submission: AY119595.1
> LD18062.complete
ATTTACCATAGGAAGGAAAGAAGAGGAATGTGCACGCACATTTCTAACAA
GGTTTTGTAAATGGGAATCAGACAAATTATTGTTTAAGGAAGTCATATAT
TGCGAAATAACGCCATCATTCAACCATCAATCAGGGCCCATGCATAACGA
TAAAAGGAGAACATGAACGATTCCTCCGATTCGGAGTACGAGGACACAGA
GTACCTGGTATTTGCGGATTTCAAGAACCACATTCATCCGCACCAGCTGA
AGCACGAGGACGCGGCCATTAAGATCATCGGAATCGAGAGTGACACGCCC
ATGGCCGAGGTAAATGGAAGCATTTATCGGGGACGCTACGAACATTCCGT
GGGAACCAACGTGTTCTTTGAGAAGGAAAAAGACAATCTGGCAAGTGATC
CGCTTTTTGAGTCAGTGTGTCGCCAGCGGTACCAGTACGTGGACAAATCC
ACCAAGGTGATATCTTTTGAAAGGGTCTACGTGGACAATTTGCACCAGGA
GGTGGAGAAGTCGGCTGAGACTGAAGAGGACGATCAGACCGAGCCAAAGC
CAGAATCTCTGAAGCTAAATATAACTTACAAGGAGGCTATTAACAAGTTT
GGAGAAGATCATTGAGTGTGGAGAACTGAGTCTAATCCTGAACAAAAAAC
ACTCTTTCAAGACATACCTCTTAGTACCATGGATACCACCTATATTACAA
CGAATCCAGCTTTAAGCCTGCGAGACTTTCTAGCCGACTATCAAAAGAAA
ATATCCGGTACTGCAGACGAAGTGCCCTTCTTTCTCCAAAAAAACCCAGT
ACTTGTCGACGTGTCTGAAAGCTGTTCCCTGGACTTGATCGAGTCCCCAG
ACGACAGCTCGATTGCAGTCTTCCAGCCCGCCGCAGACAAATGCCGCCCA
ACCTTTTCTCCGCCGCAGGAGAACCAGCATGTGCCCTCCACTTTTACTGC
TCTAAGCCAGCACAAGGACAAGTCCCGTAAGTGTCCCTTTGGCCGCACCC
AGTACAGCCACAAACTGAATCCGACGCCGACAGACTCGCCTAACCTGCAC
ATCGATGCTTGCGGCGAACTGGAGCTAACCGTGCGTCTATATCGACCACC
GCGGGCCTACCATCGCGGGTTTAAGGTGGAGATTCCCGTTTTCGCCGAGG
AGTTCGTATGTCTGGGCAGCAATTATCTGACCGAGCTGCGGGACAAGATC
AGCTGCGTTTGCAATGGAAAACGGTTTGTCGACATCAGCGACGATCCAGA
TGCACCGTTGCCATCCATTGACACAAATCCCGGTTACTTCTTCATCAACG
ACACATTCTACAACGACCAGCGCAATCCGGACAATCCCGACTATTCCAAG
ACCGTCTTGCAGTGGGCTGCCAGAGCGAACGGAGTGAACGGAGAAACGCT
TAAGGTGGAGAGTATGGAGGGCAAAAGATTCATCGATCTCACTGTCAGCC
CCGGATCACCGCTACACTACCTGCACCACGGCAATTGCGAACACCTGTTT
GTGATCTCCCAGGTAGAGGTGCTAACGCCACTTAGTAAACGGCCAGATCG
CAGCCTGTATCCCTATCCTCACGCCTTCAGTACGTTTAATCGCAGGACTT
GCTATATGTGCGGCATTCGCAGCTATAGCTTCATCGTGAACCAGTCCCGG
CGACAGCTGCACGATCCCTCCTACCTGTGCCGCAGATGTTTTCTCAGCTT
CTTTTACGTGGATGGTGTCAAGCTGGGCCAGTTCAAAGCCTATCGCATGT
ATGACCATGTAGAGCTGGAGGGCGAAGAGGAGGACATTAAACAGCAAAAT
CTCCCCTCCTGAATATACATATACATTTGTGTGATTTTTTCTTTATTTGC
GAGCTCCTTTGACTGCAAGATCGCTCAAGGAGTTGATTGATATTTTGTTC
TTGTAAAATATTCATAGATAGATTTAAATAAAATACATACACGTTGCAAC
AAGAAAAAAAAAAAAAAAAAAAAA
LD18062.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:53:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42516-RA | 1979 | CG42516-RA | 27..1979 | 1..1953 | 9765 | 100 | Plus |
Pbp49-RA | 1979 | Pbp49-RA | 27..1979 | 1..1953 | 9765 | 100 | Plus |
Pbp49-RB | 1896 | Pbp49-RB | 76..1896 | 133..1953 | 9105 | 100 | Plus |
Pbp49-RB | 1896 | Pbp49-RB | 27..78 | 1..52 | 260 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 4016843..4018789 | 1953..1 | 9595 | 99.5 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:05:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8129353..8131306 | 1954..1 | 9770 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:26:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 8130552..8132505 | 1954..1 | 9770 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 05:40:08 has no hits.
LD18062.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:41:00 Download gff for
LD18062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 4016843..4018789 | 1..1953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:52:40 Download gff for
LD18062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbp49-RC | 1..434 | 163..596 | 100 | == | Plus |
Pbp49-RC | 435..1572 | 675..1812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:30:46 Download gff for
LD18062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbp49-RB | 1..1134 | 679..1812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:21:42 Download gff for
LD18062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbp49-RA | 1..1134 | 679..1812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:20:55 Download gff for
LD18062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbp49-RC | 1..434 | 163..596 | 100 | == | Plus |
Pbp49-RC | 435..1572 | 675..1812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:09:09 Download gff for
LD18062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbp49-RA | 1..1134 | 679..1812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:00:36 Download gff for
LD18062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbp49-RA | 27..1979 | 1..1953 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:30:46 Download gff for
LD18062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42516-RA | 27..1979 | 1..1953 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:21:42 Download gff for
LD18062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbp49-RA | 18..1970 | 1..1953 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:20:55 Download gff for
LD18062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbp49-RA | 27..1979 | 1..1953 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:09:09 Download gff for
LD18062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbp49-RA | 18..1970 | 1..1953 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:41:00 Download gff for
LD18062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8129354..8131306 | 1..1953 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:41:00 Download gff for
LD18062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8129354..8131306 | 1..1953 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:41:00 Download gff for
LD18062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8129354..8131306 | 1..1953 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:21:42 Download gff for
LD18062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4016859..4018811 | 1..1953 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:54:39 Download gff for
LD18062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8130553..8132505 | 1..1953 | 100 | | Minus |
LD18062.pep2 Sequence
Translation from 162 to 614
> LD18062.pep2
MNDSSDSEYEDTEYLVFADFKNHIHPHQLKHEDAAIKIIGIESDTPMAEV
NGSIYRGRYEHSVGTNVFFEKEKDNLASDPLFESVCRQRYQYVDKSTKVI
SFERVYVDNLHQEVEKSAETEEDDQTEPKPESLKLNITYKEAINKFGEDH
*
LD18062.pep2 Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:16:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF11210-PA | 521 | GF11210-PA | 1..135 | 1..137 | 483 | 66.4 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:16:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG10673-PA | 150 | GG10673-PA | 1..150 | 1..150 | 736 | 92 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH19984-PA | 146 | GH19984-PA | 1..146 | 1..150 | 505 | 63.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42516-PC | 150 | CG42516-PC | 1..150 | 1..150 | 789 | 100 | Plus |
CG42516-PB | 150 | CG42516-PB | 1..150 | 1..150 | 789 | 100 | Plus |
CG42516-PA | 150 | CG42516-PA | 1..150 | 1..150 | 789 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:16:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI20271-PA | 145 | GI20271-PA | 4..144 | 5..149 | 521 | 66.2 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:16:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL25000-PA | 150 | GL25000-PA | 1..150 | 1..150 | 523 | 66.9 | Plus |
Dper\GL17380-PA | 537 | GL17380-PA | 1..148 | 1..148 | 478 | 65.1 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:16:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA23584-PA | 150 | GA23584-PA | 1..150 | 1..150 | 523 | 66.9 | Plus |
Dpse\GA11041-PA | 538 | GA11041-PA | 1..144 | 1..144 | 477 | 66.2 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:16:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM20720-PA | 150 | GM20720-PA | 1..150 | 1..150 | 779 | 97.3 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:16:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD10186-PA | 151 | GD10186-PA | 1..150 | 1..150 | 777 | 97.3 | Plus |
Dsim\GD10187-PA | 150 | GD10187-PA | 1..150 | 1..150 | 776 | 97.3 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:16:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ20224-PA | 145 | GJ20224-PA | 1..145 | 1..149 | 516 | 65.1 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK23044-PA | 148 | GK23044-PA | 17..148 | 15..149 | 425 | 60 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE23282-PA | 150 | GE23282-PA | 1..150 | 1..150 | 763 | 96 | Plus |
LD18062.hyp Sequence
Translation from 678 to 1811
> LD18062.hyp
MDTTYITTNPALSLRDFLADYQKKISGTADEVPFFLQKNPVLVDVSESCS
LDLIESPDDSSIAVFQPAADKCRPTFSPPQENQHVPSTFTALSQHKDKSR
KCPFGRTQYSHKLNPTPTDSPNLHIDACGELELTVRLYRPPRAYHRGFKV
EIPVFAEEFVCLGSNYLTELRDKISCVCNGKRFVDISDDPDAPLPSIDTN
PGYFFINDTFYNDQRNPDNPDYSKTVLQWAARANGVNGETLKVESMEGKR
FIDLTVSPGSPLHYLHHGNCEHLFVISQVEVLTPLSKRPDRSLYPYPHAF
STFNRRTCYMCGIRSYSFIVNQSRRQLHDPSYLCRRCFLSFFYVDGVKLG
QFKAYRMYDHVELEGEEEDIKQQNLPS*
LD18062.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pbp49-PB | 377 | CG42515-PB | 1..377 | 1..377 | 2038 | 100 | Plus |
Pbp49-PA | 377 | CG42515-PA | 1..377 | 1..377 | 2038 | 100 | Plus |
Pbp49-PD | 358 | CG42515-PD | 1..358 | 1..377 | 1891 | 94.7 | Plus |
LD18062.pep Sequence
Translation from 678 to 1811
> LD18062.pep
MDTTYITTNPALSLRDFLADYQKKISGTADEVPFFLQKNPVLVDVSESCS
LDLIESPDDSSIAVFQPAADKCRPTFSPPQENQHVPSTFTALSQHKDKSR
KCPFGRTQYSHKLNPTPTDSPNLHIDACGELELTVRLYRPPRAYHRGFKV
EIPVFAEEFVCLGSNYLTELRDKISCVCNGKRFVDISDDPDAPLPSIDTN
PGYFFINDTFYNDQRNPDNPDYSKTVLQWAARANGVNGETLKVESMEGKR
FIDLTVSPGSPLHYLHHGNCEHLFVISQVEVLTPLSKRPDRSLYPYPHAF
STFNRRTCYMCGIRSYSFIVNQSRRQLHDPSYLCRRCFLSFFYVDGVKLG
QFKAYRMYDHVELEGEEEDIKQQNLPS*
LD18062.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF11210-PA | 521 | GF11210-PA | 142..503 | 6..369 | 1380 | 69.8 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG10674-PA | 384 | GG10674-PA | 3..384 | 6..377 | 1722 | 85.1 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH19985-PA | 392 | GH19985-PA | 1..372 | 1..367 | 1097 | 57.8 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pbp49-PB | 377 | CG42515-PB | 1..377 | 1..377 | 2038 | 100 | Plus |
Pbp49-PA | 377 | CG42515-PA | 1..377 | 1..377 | 2038 | 100 | Plus |
Pbp49-PD | 358 | CG42515-PD | 1..358 | 1..377 | 1891 | 94.7 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI20272-PA | 403 | GI20272-PA | 1..385 | 1..376 | 1163 | 58.4 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:43:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL17380-PA | 537 | GL17380-PA | 147..521 | 1..367 | 1201 | 61.9 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA11041-PA | 538 | GA11041-PA | 147..522 | 1..367 | 1200 | 61.7 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM20721-PA | 377 | GM20721-PA | 1..376 | 1..376 | 1878 | 94.7 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD10188-PA | 377 | GD10188-PA | 1..376 | 1..376 | 1863 | 94.1 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ20225-PA | 400 | GJ20225-PA | 1..383 | 1..375 | 1208 | 60.1 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK23045-PA | 404 | GK23045-PA | 10..353 | 10..359 | 1084 | 60.8 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE23290-PA | 378 | GE23290-PA | 1..360 | 1..360 | 1756 | 89.2 | Plus |