Clone LD18090 Report

Search the DGRC for LD18090

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:180
Well:90
Vector:pBS SK-
Associated Gene/TranscriptAct42A-RA
Protein status:LD18090.pep: gold
Preliminary Size:1593
Sequenced Size:1645

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12051 2002-01-01 Sim4 clustering to Release 2
CG12051 2002-05-18 Blastp of sequenced clone
CG12051 2003-01-01 Sim4 clustering to Release 3
Act42A 2008-04-29 Release 5.5 accounting
Act42A 2008-08-15 Release 5.9 accounting
Act42A 2008-12-18 5.12 accounting

Clone Sequence Records

LD18090.complete Sequence

1645 bp (1645 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118907

> LD18090.complete
TTTAACTCGAAAAAGTAGGCGTCGGTCAATTCAATCTTAAAGCGTCTGTC
ATTGTGCTAAGTGTGTGCAGCGGATAACTAGAAACTACTCCTACATATTT
CCATAAAAGATCCAAATAAAATTTCTACAAAATGTGTGACGAAGAGGTTG
CAGCTTTAGTGGTCGACAACGGATCCGGCATGTGCAAAGCCGGCTTTGCC
GGTGATGACGCACCGCGTGCAGTTTTTCCTTCTATTGTCGGCCGTCCACG
TCACCAGGGCGTAATGGTAGGAATGGGACAAAAGGACTCTTATGTCGGCG
ATGAGGCACAGAGCAAACGTGGTATCCTTACCCTGAAGTACCCCATTGAG
CACGGTATCGTGACTAACTGGGACGACATGGAGAAGATCTGGCATCACAC
TTTCTACAACGAGCTTCGTGTGGCCCCGGAGGAGCACCCCGTCTTGCTTA
CTGAGGCTCCTTTGAACCCCAAGGCTAATCGCGAGAAGATGACTCAGATT
ATGTTTGAAACCTTCAACACTCCGGCCATGTATGTTGCCATCCAGGCGGT
GCTTTCTCTCTACGCCTCCGGCCGTACCACAGGTATCGTGTTGGACTCCG
GCGACGGTGTCTCCCATACTGTGCCCATTTATGAGGGCTACGCCCTGCCG
CACGCCATCCTCCGTTTGGATCTAGCCGGTCGCGATTTAACCGACTACCT
GATGAAGATTCTTACTGAGCGCGGTTACAGCTTCACCACCACCGCCGAGC
GTGAAATTGTGCGCGACATCAAGGAGAAGCTGTGCTACGTGGCCTTGGAC
TTCGAGCAGGAGATGGCCACGGCCGCTTCAAGCTCGTCCCTGGAGAAGTC
GTACGAGTTGCCCGATGGACAGGTCATCACCATCGGAAATGAGCGATTCC
GTTGCCCCGAATCGCTGTTCCAGCCGTCGTTCCTCGGCATGGAGGCCTGT
GGCATTCACGAGACCACCTACAACTCAATCATGAAGTGTGACGTCGACAT
CCGTAAGGATCTGTACGCCAACACTGTGCTGTCCGGCGGCACCACCATGT
ACCCGGGAATCGCTGACCGCATGCAAAAGGAAATCACGGCGTTGGCTCCG
TCCACCATGAAGATTAAGATTGTTGCCCCGCCAGAACGCAAGTACTCTGT
TTGGATCGGCGGCTCCATCCTGGCTTCGCTGTCTACTTTCCAGCAGATGT
GGATCTCGAAGCAAGAGTACGACGAGTCGGGCCCCTCCATTGTTCACCGC
AAGTGCTTCTAAGCAGTAGTCGGGCTGGGCGTGGTCGTTCCTCATCGAAC
ACACCCATTGCAGACAAAGGATGGGAGTCAAAAGTATTGGGCATGAGTAC
ATTAATACCGGGAGCAGGCGCACAACACTTCCGCTCCTTCAGAAGAATGC
ATTCCATTCACTTTTATACACAGTTGTACACGACGCATAAGCAAACCATA
TTGTGTTCTATTCGAAATTCAAGTTCATATGCACATAAGCATTTATAAAA
CTGATTCATGTTTGGCATTTACATTACTTCCATGCATTCCTACATATGTA
TTAAAAGCAAACTTACCATACCACTAAAATACTTGTAACCGCTTCTTAAT
AATAAAGCGACGAAAAGAACTGAAAAAAAAAAAAAAAAAAAAAAA

LD18090.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
Act42A-RA 1663 Act42A-RA 34..1659 1..1626 8130 100 Plus
Act5C-RA 1813 Act5C-RA 328..1465 126..1263 3350 86.2 Plus
Act5C.e 2621 Act5C.e 328..1465 126..1263 3350 86.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 1901094..1902608 1622..108 7560 99.9 Minus
chrX 22417052 chrX 5795049..5796186 126..1263 3350 86.3 Plus
chr2R 21145070 chr2R 16831290..16832383 174..1267 2980 84.8 Plus
chr3R 27901430 chr3R 9251852..9252988 128..1264 2970 84.1 Plus
chr3R 27901430 chr3R 11265222..11266148 128..1054 2655 85.8 Plus
chr3L 24539361 chr3L 21974285..21975204 132..1051 2545 85.1 Plus
chr3L 24539361 chr3L 21975574..21975780 1059..1265 630 87 Plus
chr2R 21145070 chr2R 1902762..1902870 109..1 545 100 Minus
chr3R 27901430 chr3R 11266226..11266418 1071..1263 485 83.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:05:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6013906..6015424 1626..108 7595 100 Minus
X 23542271 X 5902692..5903829 126..1263 3350 86.3 Plus
2R 25286936 2R 20944846..20945939 174..1267 2980 84.8 Plus
3R 32079331 3R 13426600..13427736 128..1264 2970 84.1 Plus
3R 32079331 3R 15440612..15441538 128..1054 2640 85.7 Plus
3L 28110227 3L 21985351..21986270 132..1051 2545 85.1 Plus
3L 28110227 3L 21986640..21986846 1059..1265 630 87 Plus
2R 25286936 2R 6015577..6015685 109..1 545 100 Minus
3R 32079331 3R 15441616..15441808 1071..1263 485 83.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6015105..6016623 1626..108 7595 100 Minus
X 23527363 X 5910790..5911927 126..1263 3350 86.2 Plus
3R 31820162 3R 15181443..15182369 128..1054 2640 85.6 Plus
3L 28103327 3L 21978451..21979145 132..826 2005 85.8 Plus
3R 31820162 3R 13167431..13168129 128..826 1965 85.4 Plus
2R 25260384 2R 20946045..20946697 174..826 1900 86 Plus
2R 25260384 2R 20946708..20947138 837..1267 1135 84.2 Plus
3R 31820162 3R 13168140..13168567 837..1264 1060 83.1 Plus
3L 28103327 3L 21979740..21979946 1059..1265 630 86.9 Plus
3L 28103327 3L 21979156..21979370 837..1051 595 85.1 Plus
2R 25260384 2R 6016776..6016884 109..1 545 100 Minus
3R 31820162 3R 15182447..15182639 1071..1263 485 83.4 Plus
Blast to na_te.dros performed on 2019-03-16 04:39:02 has no hits.

LD18090.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:39:40 Download gff for LD18090.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 1901094..1902606 110..1622 99 <- Minus
chr2R 1902762..1902870 1..109 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:52:42 Download gff for LD18090.complete
Subject Subject Range Query Range Percent Splice Strand
Act42A-RA 1..1131 132..1262 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:44:44 Download gff for LD18090.complete
Subject Subject Range Query Range Percent Splice Strand
Act42A-RA 1..1131 132..1262 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:38:25 Download gff for LD18090.complete
Subject Subject Range Query Range Percent Splice Strand
Act42A-RA 1..1131 132..1262 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:36:57 Download gff for LD18090.complete
Subject Subject Range Query Range Percent Splice Strand
Act42A-RA 1..1131 132..1262 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:47:47 Download gff for LD18090.complete
Subject Subject Range Query Range Percent Splice Strand
Act42A-RA 1..1131 132..1262 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:19:51 Download gff for LD18090.complete
Subject Subject Range Query Range Percent Splice Strand
Act42A-RA 1..1622 1..1622 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:44:44 Download gff for LD18090.complete
Subject Subject Range Query Range Percent Splice Strand
Act42A-RA 1..1622 1..1622 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:25 Download gff for LD18090.complete
Subject Subject Range Query Range Percent Splice Strand
Act42A-RA 5..1626 1..1622 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:57 Download gff for LD18090.complete
Subject Subject Range Query Range Percent Splice Strand
Act42A-RA 1..1622 1..1622 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:47:47 Download gff for LD18090.complete
Subject Subject Range Query Range Percent Splice Strand
Act42A-RA 5..1626 1..1622 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:39:40 Download gff for LD18090.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6013910..6015422 110..1622 100 <- Minus
2R 6015577..6015685 1..109 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:39:40 Download gff for LD18090.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6013910..6015422 110..1622 100 <- Minus
2R 6015577..6015685 1..109 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:39:40 Download gff for LD18090.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6013910..6015422 110..1622 100 <- Minus
2R 6015577..6015685 1..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:25 Download gff for LD18090.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1903082..1903190 1..109 100   Minus
arm_2R 1901415..1902927 110..1622 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:09:19 Download gff for LD18090.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6015109..6016621 110..1622 100 <- Minus
2R 6016776..6016884 1..109 100   Minus

LD18090.hyp Sequence

Translation from 131 to 1261

> LD18090.hyp
MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ
KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT
GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS
FTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVIT
IGNERFRCPESLFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL
SGGTTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASL
STFQQMWISKQEYDESGPSIVHRKCF*

LD18090.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
Act42A-PA 376 CG12051-PA 1..376 1..376 1966 100 Plus
Act5C-PE 376 CG4027-PE 1..376 1..376 1962 99.5 Plus
Act5C-PD 376 CG4027-PD 1..376 1..376 1962 99.5 Plus
Act5C-PC 376 CG4027-PC 1..376 1..376 1962 99.5 Plus
Act5C-PA 376 CG4027-PA 1..376 1..376 1962 99.5 Plus

LD18090.pep Sequence

Translation from 131 to 1261

> LD18090.pep
MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ
KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT
GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS
FTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVIT
IGNERFRCPESLFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL
SGGTTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASL
STFQQMWISKQEYDESGPSIVHRKCF*

LD18090.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13827-PA 376 GF13827-PA 1..376 1..376 2025 99.7 Plus
Dana\GF17602-PA 376 GF17602-PA 1..376 1..376 1992 96.8 Plus
Dana\GF12208-PA 376 GF12208-PA 1..376 1..376 1985 96.3 Plus
Dana\GF18300-PA 376 GF18300-PA 1..376 1..376 1975 95.5 Plus
Dana\GF10940-PA 376 GF10940-PA 1..376 1..376 1963 95.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10840-PA 376 GG10840-PA 1..376 1..376 2033 100 Plus
Dere\GG18797-PA 376 GG18797-PA 1..376 1..376 2029 99.5 Plus
Dere\GG19688-PA 376 GG19688-PA 1..376 1..376 1992 96.8 Plus
Dere\GG22068-PA 376 GG22068-PA 1..376 1..376 1985 96.3 Plus
Dere\GG16929-PA 376 GG16929-PA 1..376 1..376 1975 95.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20408-PA 376 GH20408-PA 1..376 1..376 2030 99.7 Plus
Dgri\GH24372-PA 376 GH24372-PA 1..376 1..376 2029 99.5 Plus
Dgri\GH19045-PA 376 GH19045-PA 1..376 1..376 1992 96.8 Plus
Dgri\GH22007-PA 376 GH22007-PA 1..376 1..376 1985 96.3 Plus
Dgri\GH19077-PA 376 GH19077-PA 1..376 1..376 1968 95.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
Act42A-PA 376 CG12051-PA 1..376 1..376 1966 100 Plus
Act5C-PE 376 CG4027-PE 1..376 1..376 1962 99.5 Plus
Act5C-PD 376 CG4027-PD 1..376 1..376 1962 99.5 Plus
Act5C-PC 376 CG4027-PC 1..376 1..376 1962 99.5 Plus
Act5C-PA 376 CG4027-PA 1..376 1..376 1962 99.5 Plus
Act5C-PB 376 CG4027-PB 1..376 1..376 1962 99.5 Plus
Act87E-PC 376 CG18290-PC 1..376 1..376 1926 96.8 Plus
Act87E-PB 376 CG18290-PB 1..376 1..376 1926 96.8 Plus
Act87E-PA 376 CG18290-PA 1..376 1..376 1926 96.8 Plus
Act57B-PA 376 CG10067-PA 1..376 1..376 1921 96.3 Plus
Act88F-PA 376 CG5178-PA 1..376 1..376 1912 95.5 Plus
Act79B-PB 376 CG7478-PB 1..376 1..376 1897 95.2 Plus
Act79B-PA 376 CG7478-PA 1..376 1..376 1897 95.2 Plus
Arp53D-PB 411 CG5409-PB 47..411 7..376 1278 64.6 Plus
Arp1-PA 376 CG6174-PA 12..376 9..376 1079 54.2 Plus
Arp2-PB 394 CG9901-PB 9..388 9..373 914 47.1 Plus
Arp2-PA 394 CG9901-PA 9..388 9..373 914 47.1 Plus
Arp2-PC 399 CG9901-PC 9..393 9..373 905 46.2 Plus
Arp3-PB 418 CG7558-PB 7..407 8..370 644 36.1 Plus
Arp3-PA 418 CG7558-PA 7..407 8..370 644 36.1 Plus
Bap55-PA 425 CG6546-PA 11..424 4..375 577 32.2 Plus
Arp6-PA 398 CG11678-PA 4..391 7..367 414 25.9 Plus
Arp5-PB 648 CG7940-PB 7..246 9..228 218 22.5 Plus
Arp5-PA 648 CG7940-PA 7..246 9..228 218 22.5 Plus
Arp10-PB 378 CG12235-PB 9..361 4..366 205 21.6 Plus
Arp10-PA 378 CG12235-PA 9..361 4..366 205 21.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19595-PA 376 GI19595-PA 1..376 1..376 2030 99.7 Plus
Dmoj\GI15312-PA 376 GI15312-PA 1..376 1..376 2029 99.5 Plus
Dmoj\GI24339-PA 376 GI24339-PA 1..376 1..376 1992 96.8 Plus
Dmoj\GI19711-PA 376 GI19711-PA 1..376 1..376 1985 96.3 Plus
Dmoj\GI23222-PA 376 GI23222-PA 1..376 1..376 1968 95.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17787-PA 376 GL17787-PA 1..376 1..376 2030 99.7 Plus
Dper\GL14888-PA 376 GL14888-PA 1..376 1..376 2029 99.5 Plus
Dper\GL17061-PA 376 GL17061-PA 1..376 1..376 1985 96.3 Plus
Dper\GL26327-PA 376 GL26327-PA 1..376 1..376 1980 96.5 Plus
Dper\GL23756-PA 371 GL23756-PA 1..371 1..376 1679 84.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24908-PB 376 GA24908-PB 1..376 1..376 2030 99.7 Plus
Dpse\GA24908-PA 376 GA24908-PA 1..376 1..376 2030 99.7 Plus
Dpse\GA17886-PA 376 GA17886-PA 1..376 1..376 2029 99.5 Plus
Dpse\GA14877-PB 376 GA14877-PB 1..376 1..376 1992 96.8 Plus
Dpse\GA14877-PA 376 GA14877-PA 1..376 1..376 1992 96.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16492-PA 376 GM16492-PA 1..376 1..376 2033 100 Plus
Dsec\GM12447-PA 376 GM12447-PA 1..376 1..376 2029 99.5 Plus
Dsec\GM22426-PA 376 GM22426-PA 1..376 1..376 1963 95.2 Plus
Dsec\GM24109-PA 376 GM24109-PA 1..376 1..376 1955 95.5 Plus
Dsec\GM21720-PA 376 GM21720-PA 12..376 7..376 1343 64.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10342-PA 376 GD10342-PA 1..376 1..376 2033 100 Plus
Dsim\GD16764-PA 376 GD16764-PA 1..376 1..376 2029 99.5 Plus
Dsim\GD18909-PA 376 GD18909-PA 1..376 1..376 1992 96.8 Plus
Dsim\GD11548-PA 376 GD11548-PA 1..376 1..376 1985 96.3 Plus
Dsim\Act88F-PA 376 GD19025-PA 1..376 1..376 1975 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18395-PA 376 GJ18395-PA 1..376 1..376 2030 99.7 Plus
Dvir\GJ14747-PA 376 GJ14747-PA 1..376 1..376 2029 99.5 Plus
Dvir\ActE1-PA 376 GJ10425-PA 1..376 1..376 1992 96.8 Plus
Dvir\ActC2-PA 376 GJ17479-PA 1..376 1..376 1985 96.3 Plus
Dvir\ActE2-PA 376 GJ22881-PA 1..376 1..376 1968 95.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21751-PA 376 GK21751-PA 1..376 1..376 2033 100 Plus
Dwil\GK20124-PA 376 GK20124-PA 1..376 1..376 2029 99.5 Plus
Dwil\GK13943-PA 376 GK13943-PA 1..376 1..376 1992 96.8 Plus
Dwil\GK23336-PA 376 GK23336-PA 1..376 1..376 1985 96.3 Plus
Dwil\GK11462-PA 376 GK11462-PA 1..376 1..376 1975 95.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19434-PA 376 GE19434-PA 1..376 1..376 2030 99.7 Plus
Dyak\Act57B-PA 376 GE17558-PA 1..376 1..376 2029 99.5 Plus
Dyak\GE26273-PA 376 GE26273-PA 1..376 1..376 1992 96.8 Plus
Dyak\GE12149-PA 376 GE12149-PA 1..376 1..376 1985 96.3 Plus
Dyak\GE24312-PA 376 GE24312-PA 1..376 1..376 1975 95.5 Plus