Clone LD18112 Report

Search the DGRC for LD18112

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:181
Well:12
Vector:pBS SK-
Associated Gene/TranscriptCG17486-RB
Protein status:LD18112.pep: gold
Preliminary Size:1953
Sequenced Size:1799

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17486 2001-01-01 Release 2 assignment
CG40291 2001-11-29 Blastp of sequenced clone
CG17486 2008-04-29 Release 5.5 accounting
CG17486 2008-08-15 Release 5.9 accounting
CG17486 2008-12-18 5.12 accounting

Clone Sequence Records

LD18112.complete Sequence

1799 bp (1799 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069456

> LD18112.complete
AAACGTCAATAATGTGTGGAATATTTTGTTCAGTCGTGAACAATGTTCCT
TTAAACTCCTTTAATATTTCTAGCGCTCTGAAAGTAATTCTGAAAAACCG
CGGTCCTGATGTGCAAGACGAGGTGGTTATAGATTATTGTTTTGGAAAAA
TTTTATTTGCTGGCTTCGTGTTATGGCAACAAGGGGAAAGTGTACAAAAG
CAACCTGTGGTGGAGGACGATTTTATATTTCTTTTCAATGGAGACATTTA
CAATACTTCAAAGCCTGAATATATGTCTGACACGACTTGGATAGCGGAAA
GGCTAGCTGAATGCCGTTGTAAAGAACAGAATATTTTGAAGATACTTAAG
CGATTGGAGGGACCACATTGTTTAATAATTTATGACAAACGAGAACAAAT
CCTTTACTTTAGTCGCGACGCACTTGGAAGAAATTCACTATTAATTGAAC
GCATTTGTAATGGCTTCCAATTATTGAGCACATCACATTTTGAAGATAAA
AAAATATCACTGGAATTGCCCCCATTGGGTCTTTTTCGAGTTAAACTAAA
TGATCTGAATTCGTGCGTATTGTATCCATGGCAGCCCCTCAATAATTATT
CGACTCAGCTTTTACGCAACCTTGATCTTGCGATTGGGTGGAAAACTGCA
GTAGAGAGTCCAATGTCGCCAGATTGGATGTTAAATTGCAACCCCGCATT
TAGTTATAACTTCTATGAATTTCAATACATCAAGAATAACGTGAACCTTT
ATAAAAACTTAATAGATCAGTCAGAAATTAAGTATACTCTATCTATTCTC
CATACACTGCTATCCGATTCGATAAAAAATCGTGTTAGAAACATGGCTCC
ATTTTGCAGACTCTGCATGCAAAAATTAAATATATCGCCTCCATGCAGAC
ACGCAAAATTGTGTATTCTATTTTCGGGTGGCCTTGACTGTACAATTTTG
GCCTTGCTGGCCAACCAATTTGTACCAGTAAATGAACCCATCGAACTTAT
TAATGTTGCTTTCGAAAGCGTTAAGGGCCAAAATATATCGGAAAAGCTTT
TTGATGTACCAGATAGAAAAACGTCATTAGTATCTGTCAATGAACTAAAA
CAGCTTTGTCCGGAGAGGTGCTGGAATCTACTGAAAGTGAATGTAACTCG
ACTTGAATTGCAGCAGCACCTAACATCACGTATAAAGCATCTTATATATC
CGCTAGATACGGTATTAGATGAGAGTCTTGGATGTGCCTTCTGGTTTGCT
TCGCATTGCACTCACTCTACTGCTAGAGTCGCTCTTATCGGAAGCGGGGC
AGATGAACTATTTGGTGGGTATACCCGCTATCGCAACAGTTATAGCCGTT
GTCTGGGAAACGATCTGGAGCGCCAACTTGCTGTGCAAAACGAACTTGAA
AGGGACTGGCAACGTATTTCGGCCCGTAATTTAGCCAGAGATGACCGCAT
TATTGCAGATACTGGTAAAACAGCAAGATCCCCATTCATCGAAGAGAACT
TTGTAAAATTTATAAGATCGTTAGAAGTGTATCAAAAATGTTGCTTTGGT
TTCCCGGAAGGAGTCGGCGATAAATTACTTCTGAGACTGTATGGCTATCA
AATCGGTTTGCGAGATGTTGTGTTCTTAAAGAAAAGGGCTATTCAATTTG
GGTCCCGAATTGCAAACAAAAAACAAAATGGCTCTCATCAATCTGATAAT
CTTTAACTTAAGCTTGTAAAATATTCGTGTATGTTATGGTATCTTATCAA
TAAATAAAAAGTTTAACTGATTTCACAATAAAAAAAAAAAAAAAAAAAA

LD18112.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17486-RB 1805 CG17486-RB 27..1805 1..1779 8895 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 506663..508441 1..1779 8895 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:05:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4619055..4620835 1..1781 8905 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 4620254..4622034 1..1781 8905 100 Plus
Blast to na_te.dros performed 2019-03-15 17:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 3966..4027 1667..1727 127 69.4 Plus

LD18112.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:35:27 Download gff for LD18112.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 506663..508441 1..1779 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:52:43 Download gff for LD18112.complete
Subject Subject Range Query Range Percent Splice Strand
CG17486-RB 1..1695 12..1706 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:23:15 Download gff for LD18112.complete
Subject Subject Range Query Range Percent Splice Strand
CG17486-RB 1..1695 12..1706 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:39:57 Download gff for LD18112.complete
Subject Subject Range Query Range Percent Splice Strand
CG17486-RB 1..1695 12..1706 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:49:51 Download gff for LD18112.complete
Subject Subject Range Query Range Percent Splice Strand
CG17486-RB 1..1695 12..1706 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:02 Download gff for LD18112.complete
Subject Subject Range Query Range Percent Splice Strand
CG17486-RB 1..1695 12..1706 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:58:19 Download gff for LD18112.complete
Subject Subject Range Query Range Percent Splice Strand
CG17486-RB 27..1805 1..1779 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:23:15 Download gff for LD18112.complete
Subject Subject Range Query Range Percent Splice Strand
CG17486-RB 27..1805 1..1779 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:39:57 Download gff for LD18112.complete
Subject Subject Range Query Range Percent Splice Strand
CG17486-RB 26..1804 1..1779 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:49:51 Download gff for LD18112.complete
Subject Subject Range Query Range Percent Splice Strand
CG17486-RB 27..1805 1..1779 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:02 Download gff for LD18112.complete
Subject Subject Range Query Range Percent Splice Strand
CG17486-RB 26..1804 1..1779 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:35:27 Download gff for LD18112.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4619055..4620833 1..1779 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:35:27 Download gff for LD18112.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4619055..4620833 1..1779 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:35:27 Download gff for LD18112.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4619055..4620833 1..1779 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:39:57 Download gff for LD18112.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 506560..508338 1..1779 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:26:18 Download gff for LD18112.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4620254..4622032 1..1779 100   Plus

LD18112.hyp Sequence

Translation from 2 to 1705

> LD18112.hyp
TSIMCGIFCSVVNNVPLNSFNISSALKVILKNRGPDVQDEVVIDYCFGKI
LFAGFVLWQQGESVQKQPVVEDDFIFLFNGDIYNTSKPEYMSDTTWIAER
LAECRCKEQNILKILKRLEGPHCLIIYDKREQILYFSRDALGRNSLLIER
ICNGFQLLSTSHFEDKKISLELPPLGLFRVKLNDLNSCVLYPWQPLNNYS
TQLLRNLDLAIGWKTAVESPMSPDWMLNCNPAFSYNFYEFQYIKNNVNLY
KNLIDQSEIKYTLSILHTLLSDSIKNRVRNMAPFCRLCMQKLNISPPCRH
AKLCILFSGGLDCTILALLANQFVPVNEPIELINVAFESVKGQNISEKLF
DVPDRKTSLVSVNELKQLCPERCWNLLKVNVTRLELQQHLTSRIKHLIYP
LDTVLDESLGCAFWFASHCTHSTARVALIGSGADELFGGYTRYRNSYSRC
LGNDLERQLAVQNELERDWQRISARNLARDDRIIADTGKTARSPFIEENF
VKFIRSLEVYQKCCFGFPEGVGDKLLLRLYGYQIGLRDVVFLKKRAIQFG
SRIANKKQNGSHQSDNL*

LD18112.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG17486-PB 564 CG17486-PB 1..564 4..567 2978 100 Plus

LD18112.pep Sequence

Translation from 11 to 1705

> LD18112.pep
MCGIFCSVVNNVPLNSFNISSALKVILKNRGPDVQDEVVIDYCFGKILFA
GFVLWQQGESVQKQPVVEDDFIFLFNGDIYNTSKPEYMSDTTWIAERLAE
CRCKEQNILKILKRLEGPHCLIIYDKREQILYFSRDALGRNSLLIERICN
GFQLLSTSHFEDKKISLELPPLGLFRVKLNDLNSCVLYPWQPLNNYSTQL
LRNLDLAIGWKTAVESPMSPDWMLNCNPAFSYNFYEFQYIKNNVNLYKNL
IDQSEIKYTLSILHTLLSDSIKNRVRNMAPFCRLCMQKLNISPPCRHAKL
CILFSGGLDCTILALLANQFVPVNEPIELINVAFESVKGQNISEKLFDVP
DRKTSLVSVNELKQLCPERCWNLLKVNVTRLELQQHLTSRIKHLIYPLDT
VLDESLGCAFWFASHCTHSTARVALIGSGADELFGGYTRYRNSYSRCLGN
DLERQLAVQNELERDWQRISARNLARDDRIIADTGKTARSPFIEENFVKF
IRSLEVYQKCCFGFPEGVGDKLLLRLYGYQIGLRDVVFLKKRAIQFGSRI
ANKKQNGSHQSDNL*

LD18112.pep Blast Records

Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17901-PA 591 GH17901-PA 1..582 1..564 1526 50.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17486-PB 564 CG17486-PB 1..564 1..564 2978 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16279-PA 557 GI16279-PA 2..546 21..564 1479 54.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21160-PA 774 GL21160-PA 491..759 295..561 1074 71.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25641-PA 573 GA25641-PA 1..558 1..561 1853 60.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16516-PA 581 GJ16516-PA 1..573 1..564 1574 52.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23265-PA 272 GK23265-PA 3..267 295..564 997 69.6 Plus