Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LD18112.complete Sequence
1799 bp (1799 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069456
> LD18112.complete
AAACGTCAATAATGTGTGGAATATTTTGTTCAGTCGTGAACAATGTTCCT
TTAAACTCCTTTAATATTTCTAGCGCTCTGAAAGTAATTCTGAAAAACCG
CGGTCCTGATGTGCAAGACGAGGTGGTTATAGATTATTGTTTTGGAAAAA
TTTTATTTGCTGGCTTCGTGTTATGGCAACAAGGGGAAAGTGTACAAAAG
CAACCTGTGGTGGAGGACGATTTTATATTTCTTTTCAATGGAGACATTTA
CAATACTTCAAAGCCTGAATATATGTCTGACACGACTTGGATAGCGGAAA
GGCTAGCTGAATGCCGTTGTAAAGAACAGAATATTTTGAAGATACTTAAG
CGATTGGAGGGACCACATTGTTTAATAATTTATGACAAACGAGAACAAAT
CCTTTACTTTAGTCGCGACGCACTTGGAAGAAATTCACTATTAATTGAAC
GCATTTGTAATGGCTTCCAATTATTGAGCACATCACATTTTGAAGATAAA
AAAATATCACTGGAATTGCCCCCATTGGGTCTTTTTCGAGTTAAACTAAA
TGATCTGAATTCGTGCGTATTGTATCCATGGCAGCCCCTCAATAATTATT
CGACTCAGCTTTTACGCAACCTTGATCTTGCGATTGGGTGGAAAACTGCA
GTAGAGAGTCCAATGTCGCCAGATTGGATGTTAAATTGCAACCCCGCATT
TAGTTATAACTTCTATGAATTTCAATACATCAAGAATAACGTGAACCTTT
ATAAAAACTTAATAGATCAGTCAGAAATTAAGTATACTCTATCTATTCTC
CATACACTGCTATCCGATTCGATAAAAAATCGTGTTAGAAACATGGCTCC
ATTTTGCAGACTCTGCATGCAAAAATTAAATATATCGCCTCCATGCAGAC
ACGCAAAATTGTGTATTCTATTTTCGGGTGGCCTTGACTGTACAATTTTG
GCCTTGCTGGCCAACCAATTTGTACCAGTAAATGAACCCATCGAACTTAT
TAATGTTGCTTTCGAAAGCGTTAAGGGCCAAAATATATCGGAAAAGCTTT
TTGATGTACCAGATAGAAAAACGTCATTAGTATCTGTCAATGAACTAAAA
CAGCTTTGTCCGGAGAGGTGCTGGAATCTACTGAAAGTGAATGTAACTCG
ACTTGAATTGCAGCAGCACCTAACATCACGTATAAAGCATCTTATATATC
CGCTAGATACGGTATTAGATGAGAGTCTTGGATGTGCCTTCTGGTTTGCT
TCGCATTGCACTCACTCTACTGCTAGAGTCGCTCTTATCGGAAGCGGGGC
AGATGAACTATTTGGTGGGTATACCCGCTATCGCAACAGTTATAGCCGTT
GTCTGGGAAACGATCTGGAGCGCCAACTTGCTGTGCAAAACGAACTTGAA
AGGGACTGGCAACGTATTTCGGCCCGTAATTTAGCCAGAGATGACCGCAT
TATTGCAGATACTGGTAAAACAGCAAGATCCCCATTCATCGAAGAGAACT
TTGTAAAATTTATAAGATCGTTAGAAGTGTATCAAAAATGTTGCTTTGGT
TTCCCGGAAGGAGTCGGCGATAAATTACTTCTGAGACTGTATGGCTATCA
AATCGGTTTGCGAGATGTTGTGTTCTTAAAGAAAAGGGCTATTCAATTTG
GGTCCCGAATTGCAAACAAAAAACAAAATGGCTCTCATCAATCTGATAAT
CTTTAACTTAAGCTTGTAAAATATTCGTGTATGTTATGGTATCTTATCAA
TAAATAAAAAGTTTAACTGATTTCACAATAAAAAAAAAAAAAAAAAAAA
LD18112.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:53:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17486-RB | 1805 | CG17486-RB | 27..1805 | 1..1779 | 8895 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 506663..508441 | 1..1779 | 8895 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:05:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:34:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4619055..4620835 | 1..1781 | 8905 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 4620254..4622034 | 1..1781 | 8905 | 100 | Plus |
Blast to na_te.dros performed 2019-03-15 17:34:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 3966..4027 | 1667..1727 | 127 | 69.4 | Plus |
LD18112.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:35:27 Download gff for
LD18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 506663..508441 | 1..1779 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:52:43 Download gff for
LD18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17486-RB | 1..1695 | 12..1706 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:23:15 Download gff for
LD18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17486-RB | 1..1695 | 12..1706 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:39:57 Download gff for
LD18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17486-RB | 1..1695 | 12..1706 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:49:51 Download gff for
LD18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17486-RB | 1..1695 | 12..1706 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:02 Download gff for
LD18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17486-RB | 1..1695 | 12..1706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:58:19 Download gff for
LD18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17486-RB | 27..1805 | 1..1779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:23:15 Download gff for
LD18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17486-RB | 27..1805 | 1..1779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:39:57 Download gff for
LD18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17486-RB | 26..1804 | 1..1779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:49:51 Download gff for
LD18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17486-RB | 27..1805 | 1..1779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:02 Download gff for
LD18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17486-RB | 26..1804 | 1..1779 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:35:27 Download gff for
LD18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4619055..4620833 | 1..1779 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:35:27 Download gff for
LD18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4619055..4620833 | 1..1779 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:35:27 Download gff for
LD18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4619055..4620833 | 1..1779 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:39:57 Download gff for
LD18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 506560..508338 | 1..1779 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:26:18 Download gff for
LD18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4620254..4622032 | 1..1779 | 100 | | Plus |
LD18112.hyp Sequence
Translation from 2 to 1705
> LD18112.hyp
TSIMCGIFCSVVNNVPLNSFNISSALKVILKNRGPDVQDEVVIDYCFGKI
LFAGFVLWQQGESVQKQPVVEDDFIFLFNGDIYNTSKPEYMSDTTWIAER
LAECRCKEQNILKILKRLEGPHCLIIYDKREQILYFSRDALGRNSLLIER
ICNGFQLLSTSHFEDKKISLELPPLGLFRVKLNDLNSCVLYPWQPLNNYS
TQLLRNLDLAIGWKTAVESPMSPDWMLNCNPAFSYNFYEFQYIKNNVNLY
KNLIDQSEIKYTLSILHTLLSDSIKNRVRNMAPFCRLCMQKLNISPPCRH
AKLCILFSGGLDCTILALLANQFVPVNEPIELINVAFESVKGQNISEKLF
DVPDRKTSLVSVNELKQLCPERCWNLLKVNVTRLELQQHLTSRIKHLIYP
LDTVLDESLGCAFWFASHCTHSTARVALIGSGADELFGGYTRYRNSYSRC
LGNDLERQLAVQNELERDWQRISARNLARDDRIIADTGKTARSPFIEENF
VKFIRSLEVYQKCCFGFPEGVGDKLLLRLYGYQIGLRDVVFLKKRAIQFG
SRIANKKQNGSHQSDNL*
LD18112.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17486-PB | 564 | CG17486-PB | 1..564 | 4..567 | 2978 | 100 | Plus |
LD18112.pep Sequence
Translation from 11 to 1705
> LD18112.pep
MCGIFCSVVNNVPLNSFNISSALKVILKNRGPDVQDEVVIDYCFGKILFA
GFVLWQQGESVQKQPVVEDDFIFLFNGDIYNTSKPEYMSDTTWIAERLAE
CRCKEQNILKILKRLEGPHCLIIYDKREQILYFSRDALGRNSLLIERICN
GFQLLSTSHFEDKKISLELPPLGLFRVKLNDLNSCVLYPWQPLNNYSTQL
LRNLDLAIGWKTAVESPMSPDWMLNCNPAFSYNFYEFQYIKNNVNLYKNL
IDQSEIKYTLSILHTLLSDSIKNRVRNMAPFCRLCMQKLNISPPCRHAKL
CILFSGGLDCTILALLANQFVPVNEPIELINVAFESVKGQNISEKLFDVP
DRKTSLVSVNELKQLCPERCWNLLKVNVTRLELQQHLTSRIKHLIYPLDT
VLDESLGCAFWFASHCTHSTARVALIGSGADELFGGYTRYRNSYSRCLGN
DLERQLAVQNELERDWQRISARNLARDDRIIADTGKTARSPFIEENFVKF
IRSLEVYQKCCFGFPEGVGDKLLLRLYGYQIGLRDVVFLKKRAIQFGSRI
ANKKQNGSHQSDNL*
LD18112.pep Blast Records
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:50:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH17901-PA | 591 | GH17901-PA | 1..582 | 1..564 | 1526 | 50.7 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17486-PB | 564 | CG17486-PB | 1..564 | 1..564 | 2978 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI16279-PA | 557 | GI16279-PA | 2..546 | 21..564 | 1479 | 54.1 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL21160-PA | 774 | GL21160-PA | 491..759 | 295..561 | 1074 | 71.7 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA25641-PA | 573 | GA25641-PA | 1..558 | 1..561 | 1853 | 60.5 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ16516-PA | 581 | GJ16516-PA | 1..573 | 1..564 | 1574 | 52.6 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK23265-PA | 272 | GK23265-PA | 3..267 | 295..564 | 997 | 69.6 | Plus |