Clone LD18146 Report

Search the DGRC for LD18146

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:181
Well:46
Vector:pBS SK-
Associated Gene/TranscriptCG7639-RB
Protein status:LD18146.pep: gold
Preliminary Size:1868
Sequenced Size:1779

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7639 2003-01-01 Sim4 clustering to Release 3
CG6182 2003-01-01 Sim4 clustering to Release 3
CG7639 2004-10-25 Blastp of sequenced clone
CG7639 2008-04-29 Release 5.5 accounting
CG7639 2008-08-15 Release 5.9 accounting
CG7639 2008-12-18 5.12 accounting

Clone Sequence Records

LD18146.complete Sequence

1779 bp (1779 high quality bases) assembled on 2004-10-25

GenBank Submission: BT021391

> LD18146.complete
ATTGGAAATATTTGTGCTTGCGCCCGGCGTTATATATATTTTGTAGTACT
CGAAACACTGCCGAATCCAAATCCAAAATTCGCGTGTGCACACCCACCTG
CCGAGGCGGTACCAATTAAAAGTATTTGCTTAACGCCTGCCCACCGAAGT
TAGCAAGATGCCTAAGTCGGGTCGCGACGGAGGAGCATCCAAGGACTCCA
AATACGATCTAAGCAAAATCTCAGCTCGCGTGGATCGCGTGAACGTCAGC
GGATTGCTGCGCACCCACAACGACTATGTGATGAGGGCGGCAGATGGCCT
GTTTAAGGCCAGTAACTTCCAGGATCTAATGCTGGAGGCCATGTCCACCA
AATCATATCTGCACGAGCTAGGCATCTTCAAGGATGTGAGCGTGCACATC
GATGTTAGCCGTGGAGCGGATGCCTCGCCACAGGGATACGAGGTTACCTT
CAAGGGCAACGAAATGTCGCGCATGATGGGTTCGGCGGGCACCGAGATTG
GCCAGAACGAGGGCTCCCTGCGAACGGAGTTGACTATCCCCAATATTCTG
GGACGTGGCGAGAACATCTCACTGCAGGGCAGCTATAGCAGCACCAGGGC
CAATGATCTACAACTGAAGTTCTGGAAACCCTTCTTCCACACACGCTTCA
AGGAAAATCGGCCTGAAATGTCTTTCAGCATTTTTAGGCAAACCGATCGG
TTTGACATAAGTTCATTTCAAACCACCAACATAGGCTATTTGGTGGACTT
CTCGGCGCATACGATGGTTGGAGTGGATTTGACGCACTCGCTGCAGTATG
AGAACGCCATCAGAGACGTGGGATTGCTAAACAAATCAGTGCCCTTCGCC
ATACGCGATCATTGTGGCCCCAAATTGGCCTCTTTGCTGCGCTACTCCGT
GGTCTACGACAATCGGGATGGAAACGTATTCCCCACACGCGGTATTTACC
TTAAATCAGTTAACGAATACTGCGGATTGGGCGGTAATGTCGCCTACACC
AGCAGCACTGCCCACGGAGAGTTGAATGTGCCACTGTTTGCCGGTTTGGT
GGCCCAGTTTTGCGCTCGCGTTGGCGTCGTTAAAGAGACTAAAAATACCA
CCCAGCTGCCTATTAGCTCGCTATTTTACTGTGGTGGTCCATTGACACTG
AGAGGATTTAAATTTGGAGGAGCTGGTCCAGTAGTTGAAAGCACGCCAAT
TGGAGCACAGTCTTTCTGGTGCACGGGCGCTCACCTGTGGGCACCGCTAC
CCTTCGCCGGAGTCTTCAAAAACCTGGCCAGCCACTTTAGAATGCATTTC
TTCTACAACATTGGCAACAACAATAGTTTCAGCACAGAAAACATGCGTAG
TGCATTTGGAATGGGTCTGGCGGTTAAGCTGGCCGAAAGAGCCCGAATCG
AACTCAACTATTGTGTGCCAGTGCGTCATCAGGATACAGATAGAATCCTG
AATGGTTTCCAGTTTGGCATTGGCTATGAATTCGTTTAGATGCCCTTTTC
CCCGCAACCATCAACTAGATGTAGCACCAGCAAAAGCCATGAGAGTCACA
ACAGCCCAGTTAGAAACAAATCCTTATTCACAACATATGGCTGCCCTGTT
CGTAGTTTCGAGCGTTTACAGATTCTGTTTCGTATTTTTGTCAATGCATT
TTATTTTCCTCTGAAAATGTATTCGTAGTCCAGCGATCATTTAAGTAGTT
CCTAAGGCGTGTACATACGTAAAACGAAAGGTTAAACAAAATATAAAAAA
AATTTTAAAAAAAAAAAAAAAAAAAAAAA

LD18146.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7639-RB 2032 CG7639-RB 170..1928 1..1759 8795 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10875411..10875969 1337..779 2780 99.8 Minus
chr2R 21145070 chr2R 10876204..10876749 666..121 2730 100 Minus
chr2R 21145070 chr2R 10874933..10875354 1756..1335 2080 99.5 Minus
chr2R 21145070 chr2R 10879305..10879426 122..1 610 100 Minus
chr2R 21145070 chr2R 10876031..10876142 778..667 545 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:05:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14988143..14988701 1337..779 2795 100 Minus
2R 25286936 2R 14988935..14989480 666..121 2730 100 Minus
2R 25286936 2R 14987662..14988086 1759..1335 2125 100 Minus
2R 25286936 2R 14992036..14992157 122..1 610 100 Minus
2R 25286936 2R 14988762..14988873 778..667 560 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14989342..14989900 1337..779 2795 100 Minus
2R 25260384 2R 14990134..14990679 666..121 2730 100 Minus
2R 25260384 2R 14988861..14989285 1759..1335 2125 100 Minus
2R 25260384 2R 14993235..14993356 122..1 610 100 Minus
2R 25260384 2R 14989961..14990072 778..667 560 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:41:38 has no hits.

LD18146.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:42:44 Download gff for LD18146.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10874952..10875351 1338..1737 99 <- Minus
chr2R 10875411..10875969 779..1337 99 <- Minus
chr2R 10876031..10876142 667..778 99 <- Minus
chr2R 10876204..10876747 123..666 100 <- Minus
chr2R 10879305..10879426 1..122 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:52:45 Download gff for LD18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG7639-RB 1..1332 158..1489 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:29:33 Download gff for LD18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG7639-RB 1..1332 158..1489 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:38:30 Download gff for LD18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG7639-RB 1..1332 158..1489 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:13:32 Download gff for LD18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG7639-RB 1..1332 158..1489 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:47:50 Download gff for LD18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG7639-RB 1..1332 158..1489 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:33:34 Download gff for LD18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG7639-RB 67..1822 1..1756 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:29:33 Download gff for LD18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG7639-RB 67..1822 1..1756 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:30 Download gff for LD18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG7639-RB 74..1829 1..1756 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:13:32 Download gff for LD18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG7639-RB 67..1822 1..1756 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:47:50 Download gff for LD18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG7639-RB 74..1829 1..1756 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:44 Download gff for LD18146.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14992036..14992157 1..122 100   Minus
2R 14987665..14988083 1338..1756 100 <- Minus
2R 14988143..14988701 779..1337 100 <- Minus
2R 14988762..14988873 667..778 100 <- Minus
2R 14988935..14989478 123..666 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:44 Download gff for LD18146.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14992036..14992157 1..122 100   Minus
2R 14987665..14988083 1338..1756 100 <- Minus
2R 14988143..14988701 779..1337 100 <- Minus
2R 14988762..14988873 667..778 100 <- Minus
2R 14988935..14989478 123..666 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:44 Download gff for LD18146.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14992036..14992157 1..122 100   Minus
2R 14987665..14988083 1338..1756 100 <- Minus
2R 14988143..14988701 779..1337 100 <- Minus
2R 14988762..14988873 667..778 100 <- Minus
2R 14988935..14989478 123..666 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:30 Download gff for LD18146.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10875170..10875588 1338..1756 100 <- Minus
arm_2R 10875648..10876206 779..1337 100 <- Minus
arm_2R 10876267..10876378 667..778 100 <- Minus
arm_2R 10876440..10876983 123..666 100 <- Minus
arm_2R 10879541..10879662 1..122 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:50:11 Download gff for LD18146.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14988864..14989282 1338..1756 100 <- Minus
2R 14989342..14989900 779..1337 100 <- Minus
2R 14989961..14990072 667..778 100 <- Minus
2R 14990134..14990677 123..666 100 <- Minus
2R 14993235..14993356 1..122 100   Minus

LD18146.pep Sequence

Translation from 157 to 1488

> LD18146.pep
MPKSGRDGGASKDSKYDLSKISARVDRVNVSGLLRTHNDYVMRAADGLFK
ASNFQDLMLEAMSTKSYLHELGIFKDVSVHIDVSRGADASPQGYEVTFKG
NEMSRMMGSAGTEIGQNEGSLRTELTIPNILGRGENISLQGSYSSTRAND
LQLKFWKPFFHTRFKENRPEMSFSIFRQTDRFDISSFQTTNIGYLVDFSA
HTMVGVDLTHSLQYENAIRDVGLLNKSVPFAIRDHCGPKLASLLRYSVVY
DNRDGNVFPTRGIYLKSVNEYCGLGGNVAYTSSTAHGELNVPLFAGLVAQ
FCARVGVVKETKNTTQLPISSLFYCGGPLTLRGFKFGGAGPVVESTPIGA
QSFWCTGAHLWAPLPFAGVFKNLASHFRMHFFYNIGNNNSFSTENMRSAF
GMGLAVKLAERARIELNYCVPVRHQDTDRILNGFQFGIGYEFV*

LD18146.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12630-PA 443 GF12630-PA 1..443 1..443 2182 88.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22379-PA 443 GG22379-PA 1..443 1..443 2258 94.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20799-PA 445 GH20799-PA 1..445 1..443 2057 84 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7639-PB 443 CG7639-PB 1..443 1..443 2323 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20885-PA 438 GI20885-PA 8..438 13..443 2047 84.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11476-PA 445 GL11476-PA 1..445 1..443 2106 85.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20499-PA 445 GA20499-PA 1..445 1..443 2097 85.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20162-PA 316 GM20162-PA 80..316 207..443 1252 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25641-PA 443 GD25641-PA 1..443 1..443 2321 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20620-PA 445 GJ20620-PA 1..445 1..443 2107 86.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19448-PA 440 GK19448-PA 6..440 11..443 2022 83.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12268-PA 443 GE12268-PA 1..443 1..443 2283 94.8 Plus

LD18146.hyp Sequence

Translation from 157 to 1488

> LD18146.hyp
MPKSGRDGGASKDSKYDLSKISARVDRVNVSGLLRTHNDYVMRAADGLFK
ASNFQDLMLEAMSTKSYLHELGIFKDVSVHIDVSRGADASPQGYEVTFKG
NEMSRMMGSAGTEIGQNEGSLRTELTIPNILGRGENISLQGSYSSTRAND
LQLKFWKPFFHTRFKENRPEMSFSIFRQTDRFDISSFQTTNIGYLVDFSA
HTMVGVDLTHSLQYENAIRDVGLLNKSVPFAIRDHCGPKLASLLRYSVVY
DNRDGNVFPTRGIYLKSVNEYCGLGGNVAYTSSTAHGELNVPLFAGLVAQ
FCARVGVVKETKNTTQLPISSLFYCGGPLTLRGFKFGGAGPVVESTPIGA
QSFWCTGAHLWAPLPFAGVFKNLASHFRMHFFYNIGNNNSFSTENMRSAF
GMGLAVKLAERARIELNYCVPVRHQDTDRILNGFQFGIGYEFV*

LD18146.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7639-PB 443 CG7639-PB 1..443 1..443 2323 100 Plus