Clone LD18233 Report

Search the DGRC for LD18233

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:182
Well:33
Vector:pBS SK-
Associated Gene/TranscriptPbp95-RA
Protein status:LD18233.pep: gold
Preliminary Size:2969
Sequenced Size:2635

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2702 2001-01-01 Release 2 assignment
CG2702 2001-10-10 Blastp of sequenced clone
CG2702 2003-01-01 Sim4 clustering to Release 3
CG2702 2008-04-29 Release 5.5 accounting
Pbp95 2008-08-15 Release 5.9 accounting
Pbp95 2008-12-18 5.12 accounting

Clone Sequence Records

LD18233.complete Sequence

2635 bp (2635 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061240

> LD18233.complete
AAACAACCTGAGCAATGGACGATGCCGATGATCTGCGCATAAACCAGCAG
CAGCTTATGGACGAGATTTCGGCCCTCTTGCAGAACACAGCGAAGCCGAG
CGCCGCCAACGCACTGCAGCTGAATCAGGAGCTCCAGCGCCGGCTCATGC
AAGTCCGGACCAAAATTCTGGCCATGTTACAAGTAGTAAGGGCCCGCTTC
TCTCGGAACGAGGACATCCTGGTGCGCCGGCTGCGACCTCGTTCCCATTT
CGGCCCGAATTCCCTCAATCTTAGCGGGGCGATCCTGCGGAAGGGCACGT
TTCGCTTCAAGGGCAACCTGTTTTTCCGAGACATCGATGGTCGAAGCTGT
CCTAACAACGAGGATTACGAGGCGCGGTGCCACACGGAGATGTTTCCCAC
CGACTTTGACATGCACTCCAGACATGTATGGACATTGCTAGACAAAAAGA
ATGTGATAATGGGTATAAAACAACAGTTACTGGAGCATAGGGCCCACAGT
ACGAATGCGCTGCCCAGCGGAAGCCTGAAGCGCAAGCCAATCGAGCGACA
CTTAAGTACACTGGTAAGTCTGCTGGCAACTGCGGATAGTAGCTTCAGCA
TCGACTGGAACCAGATCAGCACCCTGGACTTGGAATATCGGCACTCACCA
TATAGCTGTGAGGCAATGTGGAGGGTCTACTTAACACCAGATCTCAGGCG
AGACGATTGGTCACCCGAGGAGGACGAAACTTTACTGGCGGTGGCCACTG
CGAACAGGATGCAGAACTGGGAGTTGATAGCCGCGTCGCTAGACCGACGT
TCCGACTATCAGTGCTTCGTACGCTTTCATACCGCCCTACGTTTTCTGCT
GGAGCCAAAGAACAGCCACCGCTGGAGCGAAGAGGACAACGATAAACTAA
GGGCGATCGTTGATAGGAATACGGCAAACAGTGTAATAAACTGGAAAAAA
GTCGTGGAATACTTCCCGGACAAGTCCAAATCAACGCTGATTGGTCGTTA
CTACTACGTGTTGCATCCTAGCATCAGTCACGAACCCTTCACTACCAAGG
AGGACATGATGCTGTTCGCCGCCGTTGAAGAGTACAATGGAAAGTTTCAC
TGTTTTCCGCGTTCTCTTTTCCCAAACCGGTCGTTAACCCAACTCCGAAC
TCGCTACCACAATGTACTGGCACAACGCAACAAGACCGACTCCTGGTCCG
TTCAGGACGACACACGGCTGATGAGCTTCGTAACGCAATACGGGGCTTCC
CAGTGGCTTAACTGTGCCACGTTCTTGGGCAATCACACGCGGACCAGCTG
TCGAACCCGCTTCCTAGTCATCAAGAAATTCCTTGAACAAAATCCCAATG
CAAAAGTGGAAGACCTGCCACGCCGCCGATCGAAGAAGGTGTCCTTGGTT
AACTCTGATAACTGGGCGCAGCGTTTGCAAGAGTGGCAAGAGGACCCAGA
GTCATTAGTTAATGATAACCCCCCGAAAGGAACTCGGGTGCGCGGTCCCA
AATCGAAAAAGGCTAGGATCGAGCGACAGGCAGAGAGTTTCTCAAGACTT
TCGAAAGTTGATATAGAGTTCTGCAACTTCTTTAAGTTTAGTTATAATCT
GACGCTGAGCACTCCAAAAACTTTTCCAGTTCCAAAAGACGTTTATAACC
TTGCCTACGTGATCAGAGCTCTTGCATATAAGCCACCAATTCGACCCTCG
CTCTTACAAAACATATTTATGCCAAATGATGTGCTTAAGTGCTACAACAG
CATGATCCGAAACCTTCCGGACGAGGAAGGTGATATGAAGAGCCCACTTT
TGCCACCCAACTGGTCAACTATGATGGGGTTTCGAGCCTTATGCATTCTT
TCCGGAGATTGTCGCAAGGATACGGAAACACGTAGCTTCGAATACAATGA
ATCTTTACCACCCATCCAGCTTTTCCGCAAGCGGTTGCAAGCTCTTTTCT
ATCGTACCACTCTTCTCAGCCGCTTGGAATCACAACTCTTTACGGACTTA
CCATCAGCATTAGTTTCTTTACCACGCCCCAAACACGATTATGCAAAAAT
GGGTACACATGTTGAATTAATCGATCCAGAGCCGGCACCACAGAATGATC
TAAAATCCGAGCCGCTTAGCGAGAATGAAGTGATTAATACAGTCAAGCAG
GAATTGGAAATGGAATATACAGTTCCATAGGAACTAATAAGTAAATATGT
AATATTGATTAATTTAAGCTTTAAAAGTTTATATTTTTTACTTCATATCG
CGTTATATAATAGTTCATTACAATGGCTAACAAATAATTTATAAACTTGT
AGGTACTTTTAACGTATTTCACATACAGCAAAATCAAATGCCGGACCGAT
GTGCATTAGGGTGGCTCATTTTTCTGATTGTAGTTTAAAAATATTGCTTA
GGTTTGAAAAAAGGTATATTTATAGCAAAACGCCCTGCAAAACGAAACAA
TTTAATACACAAGCAGTCAAAAAAACTAATGTATATTTTAGTTGCCGTTT
TACAATCCTTTCAAAACTTTTATCCCGGATATTTAGTTATTAGAGCAAAA
TTGTCTAAACCTTATTTTCAATATAAAAAGAACCGATCCATCCTATTGTT
CATGCGGTAACAATGTAAAAAAAAAAAAAAAAAAA

LD18233.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
Pbp95-RA 2739 Pbp95-RA 92..2708 1..2617 13085 100 Plus
CG2747-RD 7009 CG2747-RD 6608..7009 2617..2216 2010 100 Minus
CG2747-RB 7042 CG2747-RB 6641..7042 2617..2216 2010 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3841070..3842654 1032..2616 7925 100 Plus
chr3R 27901430 chr3R 3840452..3841010 474..1032 2795 100 Plus
chr3R 27901430 chr3R 3839868..3840343 1..476 2380 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:05:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8015026..8016611 1032..2617 7930 100 Plus
3R 32079331 3R 8014408..8014966 474..1032 2795 100 Plus
3R 32079331 3R 8013824..8014299 1..476 2380 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7755857..7757442 1032..2617 7930 100 Plus
3R 31820162 3R 7755239..7755797 474..1032 2795 100 Plus
3R 31820162 3R 7754655..7755130 1..476 2380 100 Plus
Blast to na_te.dros performed 2019-03-16 04:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
Tc1 1666 Tc1 TC1 1666bp 65..191 2221..2333 125 65.4 Plus

LD18233.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:42:49 Download gff for LD18233.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3839868..3840343 1..476 100 -> Plus
chr3R 3840455..3841010 477..1032 100 -> Plus
chr3R 3841071..3842654 1033..2616 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:52:53 Download gff for LD18233.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp95-RA 1..2166 15..2180 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:47 Download gff for LD18233.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp95-RA 1..2166 15..2180 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:38:42 Download gff for LD18233.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp95-RA 1..2166 15..2180 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:33 Download gff for LD18233.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp95-RA 1..2166 15..2180 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:47:57 Download gff for LD18233.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp95-RA 1..2166 15..2180 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:29:06 Download gff for LD18233.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp95-RA 1..2614 1..2614 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:47 Download gff for LD18233.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp95-RA 1..2616 1..2616 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:42 Download gff for LD18233.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp95-RA 34..2649 1..2616 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:33 Download gff for LD18233.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp95-RA 1..2614 1..2614 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:47:57 Download gff for LD18233.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp95-RA 34..2649 1..2616 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:49 Download gff for LD18233.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8013824..8014299 1..476 100 -> Plus
3R 8014411..8014966 477..1032 100 -> Plus
3R 8015027..8016610 1033..2616 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:49 Download gff for LD18233.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8013824..8014299 1..476 100 -> Plus
3R 8014411..8014966 477..1032 100 -> Plus
3R 8015027..8016610 1033..2616 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:49 Download gff for LD18233.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8013824..8014299 1..476 100 -> Plus
3R 8014411..8014966 477..1032 100 -> Plus
3R 8015027..8016610 1033..2616 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:42 Download gff for LD18233.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3839546..3840021 1..476 100 -> Plus
arm_3R 3840133..3840688 477..1032 100 -> Plus
arm_3R 3840749..3842332 1033..2616 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:51:18 Download gff for LD18233.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7754655..7755130 1..476 100 -> Plus
3R 7755242..7755797 477..1032 100 -> Plus
3R 7755858..7757441 1033..2616 100   Plus

LD18233.pep Sequence

Translation from 14 to 2179

> LD18233.pep
MDDADDLRINQQQLMDEISALLQNTAKPSAANALQLNQELQRRLMQVRTK
ILAMLQVVRARFSRNEDILVRRLRPRSHFGPNSLNLSGAILRKGTFRFKG
NLFFRDIDGRSCPNNEDYEARCHTEMFPTDFDMHSRHVWTLLDKKNVIMG
IKQQLLEHRAHSTNALPSGSLKRKPIERHLSTLVSLLATADSSFSIDWNQ
ISTLDLEYRHSPYSCEAMWRVYLTPDLRRDDWSPEEDETLLAVATANRMQ
NWELIAASLDRRSDYQCFVRFHTALRFLLEPKNSHRWSEEDNDKLRAIVD
RNTANSVINWKKVVEYFPDKSKSTLIGRYYYVLHPSISHEPFTTKEDMML
FAAVEEYNGKFHCFPRSLFPNRSLTQLRTRYHNVLAQRNKTDSWSVQDDT
RLMSFVTQYGASQWLNCATFLGNHTRTSCRTRFLVIKKFLEQNPNAKVED
LPRRRSKKVSLVNSDNWAQRLQEWQEDPESLVNDNPPKGTRVRGPKSKKA
RIERQAESFSRLSKVDIEFCNFFKFSYNLTLSTPKTFPVPKDVYNLAYVI
RALAYKPPIRPSLLQNIFMPNDVLKCYNSMIRNLPDEEGDMKSPLLPPNW
STMMGFRALCILSGDCRKDTETRSFEYNESLPPIQLFRKRLQALFYRTTL
LSRLESQLFTDLPSALVSLPRPKHDYAKMGTHVELIDPEPAPQNDLKSEP
LSENEVINTVKQELEMEYTVP*

LD18233.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18154-PA 712 GF18154-PA 1..712 1..721 2516 65 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14352-PA 722 GG14352-PA 1..722 1..721 3514 90.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17334-PA 733 GH17334-PA 1..671 1..672 2034 54.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
Pbp95-PA 721 CG2702-PA 1..721 1..721 3796 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10259-PA 760 GI10259-PA 1..690 1..677 2134 58.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21479-PA 515 GL21479-PA 1..512 1..570 1064 43.2 Plus
Dper\GL21480-PA 164 GL21480-PA 28..159 597..713 284 48.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15437-PA 741 GA15437-PA 1..736 1..713 2092 58.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10994-PA 722 GM10994-PA 1..721 1..720 3629 93.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19964-PA 722 GD19964-PA 1..721 1..720 3617 92.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11065-PA 749 GJ11065-PA 1..687 1..677 2174 59.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13472-PA 777 GK13472-PA 1..692 1..672 2133 59.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24961-PA 718 GE24961-PA 1..718 1..721 3434 88.4 Plus

LD18233.hyp Sequence

Translation from 14 to 2179

> LD18233.hyp
MDDADDLRINQQQLMDEISALLQNTAKPSAANALQLNQELQRRLMQVRTK
ILAMLQVVRARFSRNEDILVRRLRPRSHFGPNSLNLSGAILRKGTFRFKG
NLFFRDIDGRSCPNNEDYEARCHTEMFPTDFDMHSRHVWTLLDKKNVIMG
IKQQLLEHRAHSTNALPSGSLKRKPIERHLSTLVSLLATADSSFSIDWNQ
ISTLDLEYRHSPYSCEAMWRVYLTPDLRRDDWSPEEDETLLAVATANRMQ
NWELIAASLDRRSDYQCFVRFHTALRFLLEPKNSHRWSEEDNDKLRAIVD
RNTANSVINWKKVVEYFPDKSKSTLIGRYYYVLHPSISHEPFTTKEDMML
FAAVEEYNGKFHCFPRSLFPNRSLTQLRTRYHNVLAQRNKTDSWSVQDDT
RLMSFVTQYGASQWLNCATFLGNHTRTSCRTRFLVIKKFLEQNPNAKVED
LPRRRSKKVSLVNSDNWAQRLQEWQEDPESLVNDNPPKGTRVRGPKSKKA
RIERQAESFSRLSKVDIEFCNFFKFSYNLTLSTPKTFPVPKDVYNLAYVI
RALAYKPPIRPSLLQNIFMPNDVLKCYNSMIRNLPDEEGDMKSPLLPPNW
STMMGFRALCILSGDCRKDTETRSFEYNESLPPIQLFRKRLQALFYRTTL
LSRLESQLFTDLPSALVSLPRPKHDYAKMGTHVELIDPEPAPQNDLKSEP
LSENEVINTVKQELEMEYTVP*

LD18233.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
Pbp95-PA 721 CG2702-PA 1..721 1..721 3796 100 Plus