Clone LD18295 Report

Search the DGRC for LD18295

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:182
Well:95
Vector:pBS SK-
Associated Gene/TranscriptCG32037-RA
Protein status:LD18295.pep: gold
Preliminary Size:1621
Sequenced Size:1539

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3426 2001-01-01 Release 2 assignment
CG32037 2001-10-10 Blastp of sequenced clone
CG32037 2003-01-01 Sim4 clustering to Release 3
CG32037 2008-04-29 Release 5.5 accounting
CG32037 2008-08-15 Release 5.9 accounting
CG32037 2008-12-18 5.12 accounting

Clone Sequence Records

LD18295.complete Sequence

1539 bp (1539 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061241

> LD18295.complete
ACGCGACCACAACGTAACTCCAAGATCGGAACCAAGTAATCGCGGCGTCT
ATAGATATATATATATATATAGACATCGATATAGTACAACCGTATAACCA
GCTAACAACCATTACCAGATTGCTTTGGCAACCCAATCGTGTCACGTGAT
CGTGTCGCGATCGCTCATTCTGCTCGTCATTCATCTGTCGCCGCGTCTTG
TGCAATTTGGCTGTCGAATGTGGAAGAATGTCTTGCATCTGGATTTGTGT
ACCGAGCTCTTAACGTTTGTCTGCCGAAATCTGTGATCTTAGTGTCTTTC
AATCGATCCATCGAACAACTTGACCTTTTGAGTTCGCCGATCAGGAAATT
GCTAAAAAATAAAAAAAAGATTCCTTAAATACAAAACAGTTGAAAATGTC
TACGCCATATGTGATCTTGCTGATCGGTTTACTATATCTTTGCGTGGGCC
CATTCATAATTGCCCAAGGCTCGGAGTTTGCTGAGCGCAACCACAAGAAA
CGCCAAATCTATCGGGAACAAGTATTGCCACATGCGGGTGGTAAGATACC
CGACACCGCCTTTGAGACGGATCGATTGTTTTTGAATCGCCTGCAGAAGG
AGGGCATCGCAGTGCCAGATGGGATAGTTCCCGAGCAGCGGAATCCGCAG
GTGTATCAGTACTACAGCAAGCCCATGCGCACCGTCTTCCACATCGCCCT
GAGCTCGGATGGGAGGTATACGCCGCGGGAGGGACGATACCACTACCGCC
AGGTGCCAACGGTGGAGACCACGTACCTGTACCCGCAGGCGGTGGGCCGC
CAGCACGTGGTGGTGCCACCGAAGCACGCCCTGCCCATCTACCGGCAGCT
TCAGTTGCACAATCCGCTGCTCAACCAGGTCAAGTTGCAGCCAAAGAAGG
CGCCCAATTTTCTGGAACTGGCGCCCACGGTTGGCAAGAGTCAGTCGCAT
CCATTGGCCGGTTCGGCCAAGGCGCAGTCTTATCAGAATGTGAATCTTCT
GCATGGTCACAGTCCGGTGCTGCCCGCTTTCAAGAAAACCTCCAGGGGCA
GCAAGACCTATGTGGACAGCTATGGCACAACCCATCTCTTCAGCGAGTTT
GACGATCTGCTGAACAAACTGGACCTGCAGCAAACGGGACGAAAGAATTA
TTAGTTTTAATACCCAACATGTAGTAGAATTTATGAATATGACAGCTATG
AGATCTATCTCCAGTTAAGAGTTAAGTTTACAAGTGGTTCGCATCCATTA
TCTAACCATGTGCATATCATTTCAAAACCTTTGCCATACGCCCGCTCACC
GTTTAGTGCACATCCATTCCCATTCCCATGTTTGCAAGCCATTCGTATCC
AGCCCATGCACCGTGAAAAAATGTGGTCACAATTGAGGTAAAACTAATGT
TAAAACCAATACACAACACATTTTCAAAACATTGAAAATATACTTCTTAT
TTGGTTATTAAAGCGTGAAGTGATATGCAACCGTTTTGTTTTCTATTGAA
TAAAATAAAATATTAAATTAAAAAAAAAAAAAAAAAAAA

LD18295.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG32037.a 2198 CG32037.a 235..1756 1..1522 7610 100 Plus
CG32037-RA 1785 CG32037-RA 267..1785 1..1519 7595 100 Plus
nc_11665.a 617 nc_11665.a 76..311 351..116 1180 100 Minus
nc_11665.a 617 nc_11665.a 311..359 49..1 245 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9483571..9484082 497..1 2230 97.1 Minus
chr3L 24539361 chr3L 9481662..9482099 1519..1086 2035 98.2 Minus
chr3L 24539361 chr3L 9482435..9482687 900..648 1220 98.8 Minus
chr3L 24539361 chr3L 9482192..9482377 1085..900 900 98.9 Minus
chr3L 24539361 chr3L 9483345..9483503 652..494 780 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:05:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9491698..9492194 497..1 2485 100 Minus
3L 28110227 3L 9489795..9490231 1522..1086 2185 100 Minus
3L 28110227 3L 9490566..9490818 900..648 1265 100 Minus
3L 28110227 3L 9490323..9490508 1085..900 930 100 Minus
3L 28110227 3L 9491472..9491630 652..494 795 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9484798..9485294 497..1 2485 100 Minus
3L 28103327 3L 9482895..9483331 1522..1086 2185 100 Minus
3L 28103327 3L 9483666..9483918 900..648 1265 100 Minus
3L 28103327 3L 9483423..9483608 1085..900 930 100 Minus
3L 28103327 3L 9484572..9484730 652..494 795 100 Minus
Blast to na_te.dros performed on 2019-03-15 23:16:04 has no hits.

LD18295.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:17:05 Download gff for LD18295.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9481686..9482099 1086..1495 98 <- Minus
chr3L 9482192..9482376 901..1085 98 <- Minus
chr3L 9482435..9482684 651..900 98 <- Minus
chr3L 9483347..9483499 498..650 99 <- Minus
chr3L 9483571..9484082 1..497 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:52:56 Download gff for LD18295.complete
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 1..759 396..1154 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:48 Download gff for LD18295.complete
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 1..759 396..1154 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:35:36 Download gff for LD18295.complete
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 1..759 396..1154 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:34 Download gff for LD18295.complete
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 1..759 396..1154 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:26:41 Download gff for LD18295.complete
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 1..759 396..1154 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:29:08 Download gff for LD18295.complete
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 1..1519 1..1519 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:48 Download gff for LD18295.complete
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 1..1519 1..1519 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:35:36 Download gff for LD18295.complete
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 22..1540 1..1519 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:35 Download gff for LD18295.complete
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 1..1519 1..1519 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:26:41 Download gff for LD18295.complete
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 22..1540 1..1519 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:17:05 Download gff for LD18295.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9489798..9490231 1086..1519 100 <- Minus
3L 9490323..9490507 901..1085 100 <- Minus
3L 9490566..9490815 651..900 100 <- Minus
3L 9491474..9491626 498..650 100 <- Minus
3L 9491698..9492194 1..497 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:17:05 Download gff for LD18295.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9489798..9490231 1086..1519 100 <- Minus
3L 9490323..9490507 901..1085 100 <- Minus
3L 9490566..9490815 651..900 100 <- Minus
3L 9491474..9491626 498..650 100 <- Minus
3L 9491698..9492194 1..497 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:17:05 Download gff for LD18295.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9489798..9490231 1086..1519 100 <- Minus
3L 9490323..9490507 901..1085 100 <- Minus
3L 9490566..9490815 651..900 100 <- Minus
3L 9491474..9491626 498..650 100 <- Minus
3L 9491698..9492194 1..497 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:35:36 Download gff for LD18295.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9482898..9483331 1086..1519 100 <- Minus
arm_3L 9483423..9483607 901..1085 100 <- Minus
arm_3L 9483666..9483915 651..900 100 <- Minus
arm_3L 9484574..9484726 498..650 100 <- Minus
arm_3L 9484798..9485294 1..497 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:51:20 Download gff for LD18295.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9484574..9484726 498..650 100 <- Minus
3L 9482898..9483331 1086..1519 100 <- Minus
3L 9483423..9483607 901..1085 100 <- Minus
3L 9483666..9483915 651..900 100 <- Minus
3L 9484798..9485294 1..497 100   Minus

LD18295.pep Sequence

Translation from 395 to 1153

> LD18295.pep
MSTPYVILLIGLLYLCVGPFIIAQGSEFAERNHKKRQIYREQVLPHAGGK
IPDTAFETDRLFLNRLQKEGIAVPDGIVPEQRNPQVYQYYSKPMRTVFHI
ALSSDGRYTPREGRYHYRQVPTVETTYLYPQAVGRQHVVVPPKHALPIYR
QLQLHNPLLNQVKLQPKKAPNFLELAPTVGKSQSHPLAGSAKAQSYQNVN
LLHGHSPVLPAFKKTSRGSKTYVDSYGTTHLFSEFDDLLNKLDLQQTGRK
NY*

LD18295.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24658-PA 252 GF24658-PA 1..252 1..252 1150 89.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14029-PA 252 GG14029-PA 1..252 1..252 1289 96.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15149-PA 245 GH15149-PA 1..245 1..252 964 79.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG32037-PB 252 CG32037-PB 1..252 1..252 1330 100 Plus
CG32037-PA 252 CG32037-PA 1..252 1..252 1330 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12086-PA 246 GI12086-PA 1..246 1..252 1011 80.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16626-PA 252 GA16626-PA 1..252 1..252 1107 87.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24864-PA 252 GM24864-PA 1..252 1..252 1303 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12916-PA 252 GD12916-PA 1..252 1..252 1306 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13357-PA 245 GJ13357-PA 1..245 1..252 1044 80.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10463-PA 253 GK10463-PA 1..253 1..252 1077 82 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21232-PA 252 GE21232-PA 1..252 1..252 1218 95.2 Plus

LD18295.hyp Sequence

Translation from 395 to 1153

> LD18295.hyp
MSTPYVILLIGLLYLCVGPFIIAQGSEFAERNHKKRQIYREQVLPHAGGK
IPDTAFETDRLFLNRLQKEGIAVPDGIVPEQRNPQVYQYYSKPMRTVFHI
ALSSDGRYTPREGRYHYRQVPTVETTYLYPQAVGRQHVVVPPKHALPIYR
QLQLHNPLLNQVKLQPKKAPNFLELAPTVGKSQSHPLAGSAKAQSYQNVN
LLHGHSPVLPAFKKTSRGSKTYVDSYGTTHLFSEFDDLLNKLDLQQTGRK
NY*

LD18295.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG32037-PB 252 CG32037-PB 1..252 1..252 1330 100 Plus
CG32037-PA 252 CG32037-PA 1..252 1..252 1330 100 Plus