Clone LD18367 Report

Search the DGRC for LD18367

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:183
Well:67
Vector:pBS SK-
Associated Gene/TranscriptCG18542-RA
Protein status:LD18367.pep: gold
Preliminary Size:1512
Sequenced Size:1302

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18542 2001-01-01 Release 2 assignment
CG18542 2001-10-10 Blastp of sequenced clone
CG18542 2003-01-01 Sim4 clustering to Release 3
CG32939 2003-01-01 Sim4 clustering to Release 3
CG32939 2008-04-29 Release 5.5 accounting
CG18542 2008-08-15 Release 5.9 accounting
CG18542 2008-12-18 5.12 accounting

Clone Sequence Records

LD18367.complete Sequence

1302 bp (1302 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061243

> LD18367.complete
ATTTTGCATCGCTTTGGACACACTGATTGATCGGTGTTTTTATTTTTTTT
TGGTTCGGCTTATCTAATAATTTAATAACACATTAATGCAGCCATTTATT
GTCATTCGCAACTACACGCAAGATGATGAGCTCAAGTGCCAGGAGCTGGT
GCGGGACTACATCATGTCGTTCTCGAATAAGTCCTTTTTTGTCTATTGCT
TTCGAGAGATCACCCTGCAGTTCATAGTCATCACGTGGGCCATATTCTTC
ATATTTCTGGGAGTGCCCCTGCTTTTTTGTGCACTCACTGTGCCCGCTTG
CATATTTTGCCTATTTACCGGCACCTACTTCTCGTTTTACTCCAAGGCAG
TGGAGTTGATGAGGACCAAACCATCGCAGTCTTTGGTGGCCGAGTGCTAT
GAACCCTTCATTTTCCGCTGCTCACCGAAGGAAGCTAGCTACCAGATATT
TACCGAGAACTGTCCATACGAGGAAACATACACGAGGAAATTCCGGCGCA
GGATTGTGGCCGCTATTAGTGTGAAGAATCACCACGCCGTATACAATGCT
GCATGGATCTATCGCTTTGCCATCGATCCCCATTACCCGTGTCAGACGAT
CATGGACCCCATGATAAAACTGGTGGTCAAGAACTGCATTATCGGCGGGT
ACGCCTCACTGGAGTGCACTATCTCCGAGTGGCAGGAAAGTGAGCGCGAC
TTTTATGATGATTTTGGGTTCGTTACGCGGCAGATCTACCACAAAAAGAT
CATTGGCAGCAGTTTGGCAGTGATGAAAACCCAGCTGACCTATGGGTTAC
GTACCGACGGAGCAGCTTTGCACAAGCAAAACTAGTGCGTTACCAATGGT
GCAATATAGATGATAGATAAATGGATTCTGTGGAATCTTATTTAATATTT
ACGTATTTATTCTGTGAACTTTACATTCCAGTCACATATTGCGTCCCGAA
CTCAAATCACACCGAATTATGCCCTTGATGGCGTTTCTTTATCGATTCGA
CAATGTTTAAAGCCAGTTTAGCCAATATATAGTAAGCTAATACTCCACAA
ACATTCCTGCATGTCGACAGACTTTAGCCGTTGTCGGCTCGACAAAGAGT
AAATTCCGTCTAGGATTAAGAAGAAACTTTATAATCTCCACACTCGAAGT
TTTAATAATTGTAAACACGTTGACACTGCTTTTGTCCTGTTTTATTATCT
CTGGTTTATTCTTTGACATATTCTATTTAAATAAATAAATAAAATATTTA
GTAATAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA

LD18367.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG18542-RA 1280 CG18542-RA 22..1280 1..1259 6295 100 Plus
CG32939-RA 1264 CG32939-RA 6..1264 1..1259 6295 100 Plus
unc-115-RD 2784 unc-115-RD 2699..2784 1263..1178 430 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5512070..5512965 364..1259 4480 100 Plus
chr3R 27901430 chr3R 5519390..5520285 364..1259 4480 100 Plus
chr3R 27901430 chr3R 5511588..5511795 1..208 1040 100 Plus
chr3R 27901430 chr3R 5518908..5519115 1..208 1040 100 Plus
chr3R 27901430 chr3R 5511856..5512013 207..364 790 100 Plus
chr3R 27901430 chr3R 5519176..5519333 207..364 790 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:05:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9686246..9687145 364..1263 4500 100 Plus
3R 32079331 3R 9693566..9694465 364..1263 4500 100 Plus
3R 32079331 3R 9685764..9685971 1..208 1040 100 Plus
3R 32079331 3R 9693084..9693291 1..208 1040 100 Plus
3R 32079331 3R 9686032..9686189 207..364 790 100 Plus
3R 32079331 3R 9693352..9693509 207..364 790 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9434397..9435296 364..1263 4500 100 Plus
3R 31820162 3R 9427077..9427976 364..1263 4500 100 Plus
3R 31820162 3R 9433915..9434122 1..208 1040 100 Plus
3R 31820162 3R 9426595..9426802 1..208 1040 100 Plus
3R 31820162 3R 9434183..9434340 207..364 790 100 Plus
3R 31820162 3R 9426863..9427020 207..364 790 100 Plus
Blast to na_te.dros performed 2019-03-16 08:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 1042..1142 1259..1152 127 63.3 Minus
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 6299..6421 1234..1111 114 59.4 Minus
G7 1192 G7 G7 1192bp 1142..1178 1222..1258 112 84.2 Plus

LD18367.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:30:47 Download gff for LD18367.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5511588..5511795 1..208 100 -> Plus
chr3R 5511858..5512013 209..364 100 -> Plus
chr3R 5512071..5512923 365..1217 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:52:59 Download gff for LD18367.complete
Subject Subject Range Query Range Percent Splice Strand
CG32939-RA 1..750 86..835 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:51 Download gff for LD18367.complete
Subject Subject Range Query Range Percent Splice Strand
CG32939-RA 1..750 86..835 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:51:53 Download gff for LD18367.complete
Subject Subject Range Query Range Percent Splice Strand
CG18542-RA 1..750 86..835 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:37 Download gff for LD18367.complete
Subject Subject Range Query Range Percent Splice Strand
CG32939-RA 1..750 86..835 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:41:40 Download gff for LD18367.complete
Subject Subject Range Query Range Percent Splice Strand
CG18542-RA 1..750 86..835 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:29:11 Download gff for LD18367.complete
Subject Subject Range Query Range Percent Splice Strand
CG18542-RA 3..1261 1..1259 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:51 Download gff for LD18367.complete
Subject Subject Range Query Range Percent Splice Strand
CG32939-RA 6..1264 1..1259 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:51:53 Download gff for LD18367.complete
Subject Subject Range Query Range Percent Splice Strand
CG18542-RA 5..1263 1..1259 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:37 Download gff for LD18367.complete
Subject Subject Range Query Range Percent Splice Strand
CG18542-RA 3..1261 1..1259 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:41:40 Download gff for LD18367.complete
Subject Subject Range Query Range Percent Splice Strand
CG18542-RA 5..1263 1..1259 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:30:47 Download gff for LD18367.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9685764..9685971 1..208 100 -> Plus
3R 9686034..9686189 209..364 100 -> Plus
3R 9686247..9687141 365..1259 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:30:47 Download gff for LD18367.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9685764..9685971 1..208 100 -> Plus
3R 9686034..9686189 209..364 100 -> Plus
3R 9686247..9687141 365..1259 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:30:47 Download gff for LD18367.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9685764..9685971 1..208 100 -> Plus
3R 9686034..9686189 209..364 100 -> Plus
3R 9686247..9687141 365..1259 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:51:53 Download gff for LD18367.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5511486..5511693 1..208 100 -> Plus
arm_3R 5511756..5511911 209..364 100 -> Plus
arm_3R 5511969..5512863 365..1259 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:51:23 Download gff for LD18367.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9426595..9426802 1..208 100 -> Plus
3R 9426865..9427020 209..364 100 -> Plus
3R 9427078..9427972 365..1259 100   Plus

LD18367.hyp Sequence

Translation from 85 to 834

> LD18367.hyp
MQPFIVIRNYTQDDELKCQELVRDYIMSFSNKSFFVYCFREITLQFIVIT
WAIFFIFLGVPLLFCALTVPACIFCLFTGTYFSFYSKAVELMRTKPSQSL
VAECYEPFIFRCSPKEASYQIFTENCPYEETYTRKFRRRIVAAISVKNHH
AVYNAAWIYRFAIDPHYPCQTIMDPMIKLVVKNCIIGGYASLECTISEWQ
ESERDFYDDFGFVTRQIYHKKIIGSSLAVMKTQLTYGLRTDGAALHKQN*

LD18367.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG32939-PA 249 CG32939-PA 1..249 1..249 1335 100 Plus
CG18542-PA 249 CG18542-PA 1..249 1..249 1335 100 Plus

LD18367.pep Sequence

Translation from 85 to 834

> LD18367.pep
MQPFIVIRNYTQDDELKCQELVRDYIMSFSNKSFFVYCFREITLQFIVIT
WAIFFIFLGVPLLFCALTVPACIFCLFTGTYFSFYSKAVELMRTKPSQSL
VAECYEPFIFRCSPKEASYQIFTENCPYEETYTRKFRRRIVAAISVKNHH
AVYNAAWIYRFAIDPHYPCQTIMDPMIKLVVKNCIIGGYASLECTISEWQ
ESERDFYDDFGFVTRQIYHKKIIGSSLAVMKTQLTYGLRTDGAALHKQN*

LD18367.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11670-PA 248 GF11670-PA 1..248 1..249 1172 87.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17037-PA 248 GG17037-PA 1..248 1..249 1295 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18981-PA 248 GH18981-PA 1..248 1..249 1091 81.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG32939-PA 249 CG32939-PA 1..249 1..249 1335 100 Plus
CG18542-PA 249 CG18542-PA 1..249 1..249 1335 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10841-PA 248 GI10841-PA 1..248 1..249 1111 82.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27167-PA 248 GL27167-PA 1..248 1..249 1075 80.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17205-PA 248 GA17205-PA 1..248 1..249 1074 80.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23828-PA 249 GM23828-PA 1..249 1..249 1313 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18639-PA 233 GD18639-PA 1..227 1..227 1198 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14447-PA 248 GJ14447-PA 1..248 1..249 1039 81.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12187-PA 248 GK12187-PA 1..248 1..249 1103 81.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25975-PA 248 GE25975-PA 1..248 1..249 1300 97.6 Plus