Clone LD18443 Report

Search the DGRC for LD18443

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:184
Well:43
Vector:pBS SK-
Associated Gene/TranscriptCG13933-RA
Protein status:LD18443.pep: gold
Preliminary Size:3206
Sequenced Size:3156

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13933 2001-01-01 Release 2 assignment
CG13933 2002-06-30 Blastp of sequenced clone
CG13933 2003-01-01 Sim4 clustering to Release 3
CG13933 2008-04-29 Release 5.5 accounting
CG13933 2008-08-15 Release 5.9 accounting
CG13933 2008-12-18 5.12 accounting

Clone Sequence Records

LD18443.complete Sequence

3156 bp (3156 high quality bases) assembled on 2002-06-30

GenBank Submission: AY129444

> LD18443.complete
TGAAACCCTATACTATAATATACTTTATTTAATCCCAAAGTTTTTTTTTG
ATTGTGGTAAATTTGAAATGCCCGGATGCGCTGAATCTAGCCTGAAAACG
CGCCACAGGGATGTGGGATTCTGTGACTGAAGCCATCGGAGCAGCCTTTC
TCCTTCCAGCCGTCGTTCAGTGCTGATCTGGGCGGTTCTTCAGGGCTCGT
ATTGATTTTTACGGTTTCGGAAGTGATACGCACTTCGCCGTCTAGCGATC
TTCCCCGGAAACTGCGTCGCAGGAGATACTAGCATGACTGTGCAGTGTTA
GACGGCCGTAAAGGGAGAAGCCAGAGCAATGGGCGGCTCCGTGAGCCAGG
TGTTCCGATCCGGATCCGCACTCCTCTCGCATCGCGACGGAAAGCTGTCC
AAGGCCACCGAAGAGACCATACAGACACTGTTTGACATCCTGCGCGCCAA
TCCGAAGGTTTCCCTGCAGACCCTCGAGAGCCTGCTCATCCAGATCCCAA
AGAACGAGAATATCCTGGCCATGCATGACGACTATGGATACAACATCCTG
CAGCGCAGCGTCGGCCTCAACCACATCGATCTCACTAAGTGGCTGCTGCA
TCGCCACCGCCCGGACGTTAACCGCTCGCCCTGCTCCCTGCCCCTGCACA
TCGCCACCCTGCGTGGCTACGAGGAGTGCGTGGAGTTATTGCTTCGGCAT
GGCGCACGTATCGACGTGGACACTCGGATGTGTTTTCCTGGCGCCCACAC
GAGAAATTGCGAGGAGAGCGGCAAATGGCACAACAACGTGGACGATGTCA
GCGAGCGGCTAAACACAAAGCTACAGAACGCGCTCTTCTATGCAATCGAC
GGAGATCAGTACAATGTTCTAAGCTTGCTCACCCAAAAAATGGAGGAGCC
GTGGATCCCCTTCCGCGTGAAAAAGCCCCTGCTCCACTTGGCCTGCGAAC
GCGGCGCCTGGAATTGCGTCCAGCAACTAGTGGTCACCCGTTCGGAGGAA
ATCAATCTTATTATGGACGAGTATTACCCGATTCACCATGCCGTGCTTCA
TGATGGTCGCTTTCTTGAGCTACTCATTCATCAGGGTGCAATTACAACTG
TACGCACCTGCACCCAACAAATGACCCTACTGCATGTGGTTATTTTTGCT
GCTCGTAAGTCTGCTGAAGACACGTTGGCCACTCTTCGCATCCTGCTGGA
ACGAGGATGCAAAGAGCTAATCAACGCACCAGACTCGTTGGGAAACACTC
CACTGCACGCCCTGATAGTGCGCTATGCCCTTGAGGAAGCCCGGTACGGC
TACGACAAGTGGAGCAAGTGGGATGTGTTGCACCTAGTGCGATTTCTCCT
GCAGAACGGGGCCAAGCAATCGATTAACCAAGCGGGGAACAGTGCCATGG
CCTGTGTGTTTCGACACCTGCGAGACTGGGAAGTCTGCTACGAACTGCTA
AGCATGCTTATCAAGGAGAATGGAGACCCCAACATCGTGGGGAGAGATGG
ATCTGTGCCCATTATGGTTCTGCTAGTGCCATTAATTAATAAGGATCACC
TGCATCATTTCACGCACTCCATGAAGGTCTGCTATCTGAACTGCATCCGC
ATGCTGCTGCAGCACGGAGCGAATCCCAATTGCTCCTACCGCGCCAACCT
TAAACCACTGCACGTGCTCGTGTTTACGGTTAGCGAAAACTTTACGCTTA
ATTGTGATGCTCAAAAGCGCACCAACTTCGACTTCATCAAGAACATCCTA
CTGATGCTACTTCAGCACGGCCTGGACTGCAATAAGACATATCAGCACAT
TCTGCAGGCGGTGATGGACATGGTGCATAATGTGCGCACCTGCCACGACA
TGGAGTGCGTCTACGAGTTGACTCTGACGCTAATCCAGTACGGGGCTGAC
CCCAACATAGTGCTCAGCGGAAAGACAACGCCCGGCACCGCCATCTTCTC
CAACGAGCTGGCAACTTTTCGCAGTTCGTTTCGCACCAACTCGTGCTACC
TGCTTTTCTACTACATCATCCTGATCACGAAGAAGGAGTTCATCTTGAAC
GATCCGAACGCGACGTATACACGCGTCATTCACCTCTTCTACCTGACTAT
GCACCACGAGCCGCTCTTTAATTGCCTCAAGTCCCTACACAACTTTTACG
TGGCACAGGTGCCCAGTAAGAAGACGGAGCAGCTAATAGCCCTGATCTCG
TCCCTCTACCGTCGGCCGCGCAGTCTAAAGCAGCTATCCCGCTGGGCCAT
CTATGAGGCGATGAACCGCAAGCTGGCCCAAAACATCAACTGCCTGAACC
TGCCGGGCCCGCTCAAAGACTACGTGCTGCAGTTCGAGAGGTAGCGAGTG
GAGCGGCCGAAGGACCAATGAATCCCAACCGCAGCGAACTAGAGTCAATC
ACTACTGTTGCCCCTAGGCTATGTAATGTTTAATACGCATATTCGCCTAC
CCCAGTAGGTATGTAGGTACGCAATAATTACGAACTATCAGGCCTGTTCT
GGGCCGGCCCATCGTAGCTTAACGATCAGTTCTGAAATGACTGAATTTAC
TTTGATATCGAAAGCGAATAGTTATGTATACTTTTTGTTATAACACCTAA
TTAGATCGCTAAATTCTCTTAATTTAGGGCCAAAGGAGATACGCTTGATC
TGAAGCTGTTGCGTATGAGATATGAAAACGTTTTTAAAGTACCTAGACAC
AACATGAAACACACACAAGAAGCCAATTTAAATAATGTCAAATCAAACAC
GTGCAATTTCTTTGATACGAATATATTGAAACTATTGTGGGAGAGACACG
CTCATCTATGTTTTGTAATTCTATACGTACAACTTTGTGAACTGTAATGC
GCTTTACACTATACAAGCACATCCCGCCCCCGCACCCAACGGCCCCTCAC
CCCGTTTCCAGTCCCTCATGCTGCGTAAGTTATAGTAGGACATAAACTTA
AGGCTGTTTTTTGACAAACATTTCGGGTGTTTTAGAATTTTGTATATTCG
AACGGAGGAGCGAGGCGTTATGTAATTATTATTGTAACTATTATTATTGT
TGCTAAACTGTTGTTAATCTCTGTATCTATAATGTCATTTTCAATCGAAT
TGATAACGCTATCGATCAATAAATAAACATAAACTTTAAAAAAAAAAAAA
AAAAAA

LD18443.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13933-RA 3183 CG13933-RA 37..3175 1..3139 15680 99.9 Plus
CG13933.a 3158 CG13933.a 25..3158 1..3137 15600 99.8 Plus
CG13933.d 3100 CG13933.d 25..2948 1..2924 14605 99.9 Plus
CG13933.d 3100 CG13933.d 2949..3100 2986..3137 760 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1771369..1772931 3137..1575 7815 100 Minus
chr3L 24539361 chr3L 1773541..1774679 1139..1 5680 99.9 Minus
chr3L 24539361 chr3L 1773137..1773471 1473..1139 1675 100 Minus
chr3L 24539361 chr3L 1772978..1773087 1581..1472 550 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:05:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1771807..1773371 3139..1575 7825 100 Minus
3L 28110227 3L 1773981..1775119 1139..1 5680 99.9 Minus
3L 28110227 3L 1773577..1773911 1473..1139 1675 100 Minus
3L 28110227 3L 1773418..1773527 1581..1472 550 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1771807..1773371 3139..1575 7825 100 Minus
3L 28103327 3L 1773981..1775119 1139..1 5680 99.9 Minus
3L 28103327 3L 1773577..1773911 1473..1139 1675 100 Minus
3L 28103327 3L 1773418..1773527 1581..1472 550 100 Minus
Blast to na_te.dros performed 2019-03-16 08:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 4..67 3083..3021 137 70.3 Minus
accord2 7650 accord2 QBERT 7650bp 4353..4390 3038..3076 129 84.6 Plus
Tabor 7345 Tabor TABOR 7345bp 1569..1636 2998..2930 126 66.7 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7011..7100 3112..3023 125 62.6 Minus

LD18443.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:31:10 Download gff for LD18443.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1771369..1772929 1577..3137 100 <- Minus
chr3L 1772983..1773086 1473..1576 100 <- Minus
chr3L 1773138..1773470 1140..1472 100 <- Minus
chr3L 1773541..1774679 1..1139 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:53:04 Download gff for LD18443.complete
Subject Subject Range Query Range Percent Splice Strand
CG13933-RA 1..2016 329..2344 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:18:01 Download gff for LD18443.complete
Subject Subject Range Query Range Percent Splice Strand
CG13933-RA 1..2016 329..2344 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:52:02 Download gff for LD18443.complete
Subject Subject Range Query Range Percent Splice Strand
CG13933-RA 1..2016 329..2344 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:09:11 Download gff for LD18443.complete
Subject Subject Range Query Range Percent Splice Strand
CG13933-RA 1..2016 329..2344 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:42:32 Download gff for LD18443.complete
Subject Subject Range Query Range Percent Splice Strand
CG13933-RA 1..2016 329..2344 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:42:39 Download gff for LD18443.complete
Subject Subject Range Query Range Percent Splice Strand
CG13933-RA 25..3161 1..3137 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:18:01 Download gff for LD18443.complete
Subject Subject Range Query Range Percent Splice Strand
CG13933-RA 25..3161 1..3137 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:02 Download gff for LD18443.complete
Subject Subject Range Query Range Percent Splice Strand
CG13933-RA 29..3165 1..3137 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:09:11 Download gff for LD18443.complete
Subject Subject Range Query Range Percent Splice Strand
CG13933-RA 25..3161 1..3137 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:42:32 Download gff for LD18443.complete
Subject Subject Range Query Range Percent Splice Strand
CG13933-RA 29..3165 1..3137 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:31:10 Download gff for LD18443.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1771809..1773369 1577..3137 100 <- Minus
3L 1773423..1773526 1473..1576 100 <- Minus
3L 1773578..1773910 1140..1472 100 <- Minus
3L 1773981..1775119 1..1139 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:31:10 Download gff for LD18443.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1771809..1773369 1577..3137 100 <- Minus
3L 1773423..1773526 1473..1576 100 <- Minus
3L 1773578..1773910 1140..1472 100 <- Minus
3L 1773981..1775119 1..1139 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:31:10 Download gff for LD18443.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1771809..1773369 1577..3137 100 <- Minus
3L 1773423..1773526 1473..1576 100 <- Minus
3L 1773578..1773910 1140..1472 100 <- Minus
3L 1773981..1775119 1..1139 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:02 Download gff for LD18443.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1771809..1773369 1577..3137 100 <- Minus
arm_3L 1773423..1773526 1473..1576 100 <- Minus
arm_3L 1773578..1773910 1140..1472 100 <- Minus
arm_3L 1773981..1775119 1..1139 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:41:14 Download gff for LD18443.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1773578..1773910 1140..1472 100 <- Minus
3L 1771809..1773369 1577..3137 100 <- Minus
3L 1773423..1773526 1473..1576 100 <- Minus
3L 1773981..1775119 1..1139 99   Minus

LD18443.pep Sequence

Translation from 328 to 2343

> LD18443.pep
MGGSVSQVFRSGSALLSHRDGKLSKATEETIQTLFDILRANPKVSLQTLE
SLLIQIPKNENILAMHDDYGYNILQRSVGLNHIDLTKWLLHRHRPDVNRS
PCSLPLHIATLRGYEECVELLLRHGARIDVDTRMCFPGAHTRNCEESGKW
HNNVDDVSERLNTKLQNALFYAIDGDQYNVLSLLTQKMEEPWIPFRVKKP
LLHLACERGAWNCVQQLVVTRSEEINLIMDEYYPIHHAVLHDGRFLELLI
HQGAITTVRTCTQQMTLLHVVIFAARKSAEDTLATLRILLERGCKELINA
PDSLGNTPLHALIVRYALEEARYGYDKWSKWDVLHLVRFLLQNGAKQSIN
QAGNSAMACVFRHLRDWEVCYELLSMLIKENGDPNIVGRDGSVPIMVLLV
PLINKDHLHHFTHSMKVCYLNCIRMLLQHGANPNCSYRANLKPLHVLVFT
VSENFTLNCDAQKRTNFDFIKNILLMLLQHGLDCNKTYQHILQAVMDMVH
NVRTCHDMECVYELTLTLIQYGADPNIVLSGKTTPGTAIFSNELATFRSS
FRTNSCYLLFYYIILITKKEFILNDPNATYTRVIHLFYLTMHHEPLFNCL
KSLHNFYVAQVPSKKTEQLIALISSLYRRPRSLKQLSRWAIYEAMNRKLA
QNINCLNLPGPLKDYVLQFER*

LD18443.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24964-PA 671 GF24964-PA 1..671 1..671 3451 96.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14563-PA 671 GG14563-PA 1..671 1..671 3595 99.4 Plus
Dere\GG16463-PA 1551 GG16463-PA 377..686 81..482 156 25.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15721-PA 675 GH15721-PA 1..675 1..671 3249 90.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13933-PA 671 CG13933-PA 1..671 1..671 3552 100 Plus
CG13933-PB 670 CG13933-PB 1..670 1..671 3534 99.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12775-PA 712 GI12775-PA 1..712 1..671 3289 87.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16213-PA 1696 GL16213-PA 1..528 1..527 2726 95.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12637-PA 691 GA12637-PA 1..691 1..671 3339 91 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14171-PA 671 GM14171-PA 1..671 1..671 3609 99.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13440-PA 671 GD13440-PA 1..671 1..671 3599 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16073-PA 696 GJ16073-PA 1..695 1..670 3305 89.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17558-PA 720 GK17558-PA 1..720 1..671 3280 87.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20917-PA 671 GE20917-PA 1..671 1..671 3608 99.9 Plus

LD18443.hyp Sequence

Translation from 328 to 2343

> LD18443.hyp
MGGSVSQVFRSGSALLSHRDGKLSKATEETIQTLFDILRANPKVSLQTLE
SLLIQIPKNENILAMHDDYGYNILQRSVGLNHIDLTKWLLHRHRPDVNRS
PCSLPLHIATLRGYEECVELLLRHGARIDVDTRMCFPGAHTRNCEESGKW
HNNVDDVSERLNTKLQNALFYAIDGDQYNVLSLLTQKMEEPWIPFRVKKP
LLHLACERGAWNCVQQLVVTRSEEINLIMDEYYPIHHAVLHDGRFLELLI
HQGAITTVRTCTQQMTLLHVVIFAARKSAEDTLATLRILLERGCKELINA
PDSLGNTPLHALIVRYALEEARYGYDKWSKWDVLHLVRFLLQNGAKQSIN
QAGNSAMACVFRHLRDWEVCYELLSMLIKENGDPNIVGRDGSVPIMVLLV
PLINKDHLHHFTHSMKVCYLNCIRMLLQHGANPNCSYRANLKPLHVLVFT
VSENFTLNCDAQKRTNFDFIKNILLMLLQHGLDCNKTYQHILQAVMDMVH
NVRTCHDMECVYELTLTLIQYGADPNIVLSGKTTPGTAIFSNELATFRSS
FRTNSCYLLFYYIILITKKEFILNDPNATYTRVIHLFYLTMHHEPLFNCL
KSLHNFYVAQVPSKKTEQLIALISSLYRRPRSLKQLSRWAIYEAMNRKLA
QNINCLNLPGPLKDYVLQFER*

LD18443.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13933-PA 671 CG13933-PA 1..671 1..671 3552 100 Plus
CG13933-PB 670 CG13933-PB 1..670 1..671 3534 99.9 Plus