Clone LD18447 Report

Search the DGRC for LD18447

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:184
Well:47
Vector:pBS SK-
Associated Gene/TranscriptCG5705-RA
Protein status:LD18447.pep: gold
Preliminary Size:1533
Sequenced Size:1411

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5705 2001-01-01 Release 2 assignment
CG5705 2001-10-10 Blastp of sequenced clone
CG5705 2003-01-01 Sim4 clustering to Release 3
CG5705 2008-04-29 Release 5.5 accounting
CG5705 2008-08-15 Release 5.9 accounting
CG5705 2008-12-18 5.12 accounting

Clone Sequence Records

LD18447.complete Sequence

1411 bp (1411 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061245

> LD18447.complete
TATCATCTTTGGTCCACCTCTTGTTGTTATTTAATTATTTGTATTTTATT
TTCAATGAATTTTCAATGAAAAGCTGACAAAATGATATCGCGCAAACTAC
TAAACCTTCGACTGGGTTACCTGGCACGCCGTTGGGCCAGCACGGATCCG
CTGAGCATTCAGAACGAGAAGCTGCAGGCTTATTTGGAGTCTCTACGCCA
GGAATACTACGCCGTGCGAGTCAACGCCGCCGGAAACAGCAAATCCTACG
CCCGTCTCGCCCAGCTGGAGGGCGTGGTCAGTGCCCTGGAGCAGCGACGC
GTACTAGAACGGCACATCACCAGCGCCAAGGACATGGAAGCGGAGAAGGA
CGAGGATATGCGTGAGCTAATGCGCGAGGAGAACGAAGTCTATGTGGATC
TACTGGGCAAGCAGGATCAGGCCTTACTGCAGGAGCTGCTTACGCTCTCT
GACGATGAGGAGTATCCGGCTCTGATCTTCGGCCTGAATGCCGGCGCCGG
TGGCCAGGAGGCAATGCTATTCGCCCAAGAATTGTACGAAATGTACACCG
GCTATTTCGAGCACATGGGCTGGGAGTGGGAGGAGTTTGCCAGCGAGGGC
ACCGACATCGGGGGTCTGCGGCACGCTAGTCTGATGGTGAGCGGCGAGGA
TGCCTTCCGCTGGCTGCGCTATGAGGCTGGAGTTCACCGCGTACAGCGGG
TGCCGGCCACTGAAAAGTCTGGACGCATGCACACCAGCACCGCCTCAATT
ACAGTGATTCCCCGACCCGCCGACATCCAAGTGCACATCGCTGAGAAGGA
TCTGAAGATCGAGACGAAGCGAGCGAGTGGAGCTGGTGGACAGCATGTTA
ACACCACCGACTCGGCTGTAAGAATTGTTCATCTGCCCACGGGTCTGGCG
GTGGAGGCGCAATCGGAACGCTCCCAGCTCAAAAACCGGGAGCTAGCGAT
GAAGCGTCTACGGTCGCGACTTGTGCAACAGCAGTTGGAGAGCGTTGAGG
CTAGCAAAATGGCCACCAAGAAGGCGCAACAGGGTAGTCTCAATCGCAAT
GAGAAGATCCGTACCTACAATTTCGTCCAGGACCGCATAACGGATCATCG
AATTCAAGGCGGTACGCTGCACAACCTCAATGGTTTCCTCAAGGGCGGCG
ACCAACTGAGTGGACTAATAGAGAAGTTGCAACTGGAACATCGAAGGGAA
CGACTAAAGGAGCTCTTGGATAGGTGGGAGCCACCAAAAGAAGCTATTGA
GAAAAACTAGAGCTACTTTCGTTTGTTACTACATTTATACGCCTGTGTTT
TAGAGGATAATTGTGCTTTTGCAACAGAAATTATATTAAAAGAGAGCAAG
GGCAGCCATCTGAATACAATGTTAAAGACACTATTTAATTTGTAAAAAAA
AAAAAAAAAAA

LD18447.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5705-RA 1414 CG5705-RA 19..1414 1..1396 6980 100 Plus
CG5705.a 1392 CG5705.a 65..1392 69..1396 6640 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13218682..13220074 1..1393 6950 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:05:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13220006..13221401 1..1396 6980 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13220006..13221401 1..1396 6980 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:58:04 has no hits.

LD18447.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:58:43 Download gff for LD18447.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13218682..13220074 1..1393 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:53:05 Download gff for LD18447.complete
Subject Subject Range Query Range Percent Splice Strand
CG5705-RA 1..1179 82..1260 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:39 Download gff for LD18447.complete
Subject Subject Range Query Range Percent Splice Strand
CG5705-RA 1..1179 82..1260 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:38:17 Download gff for LD18447.complete
Subject Subject Range Query Range Percent Splice Strand
CG5705-RA 1..1179 82..1260 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:26 Download gff for LD18447.complete
Subject Subject Range Query Range Percent Splice Strand
CG5705-RA 1..1179 82..1260 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:48 Download gff for LD18447.complete
Subject Subject Range Query Range Percent Splice Strand
CG5705-RA 1..1179 82..1260 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:28:55 Download gff for LD18447.complete
Subject Subject Range Query Range Percent Splice Strand
CG5705-RA 19..1411 1..1393 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:39 Download gff for LD18447.complete
Subject Subject Range Query Range Percent Splice Strand
CG5705-RA 19..1411 1..1393 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:38:17 Download gff for LD18447.complete
Subject Subject Range Query Range Percent Splice Strand
CG5705-RA 28..1420 1..1393 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:26 Download gff for LD18447.complete
Subject Subject Range Query Range Percent Splice Strand
CG5705-RA 19..1411 1..1393 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:48 Download gff for LD18447.complete
Subject Subject Range Query Range Percent Splice Strand
CG5705-RA 28..1420 1..1393 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:58:43 Download gff for LD18447.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13220006..13221398 1..1393 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:58:43 Download gff for LD18447.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13220006..13221398 1..1393 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:58:43 Download gff for LD18447.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13220006..13221398 1..1393 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:38:17 Download gff for LD18447.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13220006..13221398 1..1393 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:51:10 Download gff for LD18447.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13220006..13221398 1..1393 100   Plus

LD18447.pep Sequence

Translation from 81 to 1259

> LD18447.pep
MISRKLLNLRLGYLARRWASTDPLSIQNEKLQAYLESLRQEYYAVRVNAA
GNSKSYARLAQLEGVVSALEQRRVLERHITSAKDMEAEKDEDMRELMREE
NEVYVDLLGKQDQALLQELLTLSDDEEYPALIFGLNAGAGGQEAMLFAQE
LYEMYTGYFEHMGWEWEEFASEGTDIGGLRHASLMVSGEDAFRWLRYEAG
VHRVQRVPATEKSGRMHTSTASITVIPRPADIQVHIAEKDLKIETKRASG
AGGQHVNTTDSAVRIVHLPTGLAVEAQSERSQLKNRELAMKRLRSRLVQQ
QLESVEASKMATKKAQQGSLNRNEKIRTYNFVQDRITDHRIQGGTLHNLN
GFLKGGDQLSGLIEKLQLEHRRERLKELLDRWEPPKEAIEKN*

LD18447.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14253-PA 392 GF14253-PA 1..392 1..392 1759 82.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23822-PA 392 GG23822-PA 1..392 1..392 1987 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11092-PA 395 GH11092-PA 1..392 1..391 1595 75.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
mRF1-PA 392 CG5705-PA 1..392 1..392 1986 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17608-PA 393 GI17608-PA 3..393 4..392 1592 76 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26306-PA 313 GL26306-PA 1..205 1..205 895 80 Plus
Dper\GL26306-PA 313 GL26306-PA 177..313 251..392 469 66.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19071-PA 392 GA19071-PA 1..392 1..392 1773 83.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10257-PA 166 GM10257-PA 1..166 227..392 858 98.8 Plus
Dsec\GM10246-PA 171 GM10246-PA 1..164 1..164 793 95.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17953-PA 393 GJ17953-PA 1..393 1..392 1582 74.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14545-PA 397 GK14545-PA 1..391 1..389 1704 80.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18626-PA 392 GE18626-PA 1..392 1..392 2005 96.2 Plus

LD18447.hyp Sequence

Translation from 81 to 1259

> LD18447.hyp
MISRKLLNLRLGYLARRWASTDPLSIQNEKLQAYLESLRQEYYAVRVNAA
GNSKSYARLAQLEGVVSALEQRRVLERHITSAKDMEAEKDEDMRELMREE
NEVYVDLLGKQDQALLQELLTLSDDEEYPALIFGLNAGAGGQEAMLFAQE
LYEMYTGYFEHMGWEWEEFASEGTDIGGLRHASLMVSGEDAFRWLRYEAG
VHRVQRVPATEKSGRMHTSTASITVIPRPADIQVHIAEKDLKIETKRASG
AGGQHVNTTDSAVRIVHLPTGLAVEAQSERSQLKNRELAMKRLRSRLVQQ
QLESVEASKMATKKAQQGSLNRNEKIRTYNFVQDRITDHRIQGGTLHNLN
GFLKGGDQLSGLIEKLQLEHRRERLKELLDRWEPPKEAIEKN*

LD18447.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5705-PA 392 CG5705-PA 1..392 1..392 1986 100 Plus