Clone LD18607 Report

Search the DGRC for LD18607

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:186
Well:7
Vector:pBS SK-
Associated Gene/TranscriptCG8460-RA
Protein status:LD18607.pep: gold
Preliminary Size:1472
Sequenced Size:1325

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8460 2001-01-01 Release 2 assignment
CG8460 2001-10-10 Blastp of sequenced clone
CG8460 2003-01-01 Sim4 clustering to Release 3
CG8460 2008-04-29 Release 5.5 accounting
CG8460 2008-08-15 Release 5.9 accounting
CG8460 2008-12-18 5.12 accounting

Clone Sequence Records

LD18607.complete Sequence

1325 bp (1325 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061246

> LD18607.complete
TGCGATTTATGCTGTGGTCCTGATTGTCCTTCTGTCGAAATGCGTGCGCC
TGATGCGCTCCTGCTCCGCGTCGCTCTCCTGCTTCTACTGCTGACCACCG
TCCGCGGAACCCTCGCCCCGGACAGCCACAAATCGAAGAGCAAGACCAAG
GAGAGTGCTCTGCGTGGCGGTCCGCAAGACCAAGATGTTTTCGATCTGGG
CTTGGTTAGTCCCGAGCCCCTGGCCAAGGATATCGTGAGCAATCATCGCG
GGTACTTCAAGGAGACGGGATTGCGACGCTTCAATGGCACCACCTTGGGC
TATGTGACTCCATGGAACTCGCATGGCTATGATGTGGCTAAGATATTTGC
CAAGAAGTTCGACATTATCTCGCCGGTTTGGCTGCAGATTGTTAAGCAGG
GAGATCGTTATGCCGTAGCCGGAACCCATGACATCGATGCGGGTTGGCTA
ACCGATGTCCGGAGAAAGGGTAAACAGGTGCACAATCAGCGAACGGTTAA
AGTGTTTCCCCGTTTTATATTCGATCACTTCACTGATCGGGACATTAAGC
TCTTGCTTAGCGACGCCCAGGAGAGGACGAAAGTCAACGACGTGCTGATC
AAGTGCTGCAAGGATAATGGCTTCGATGGACTCGTCCTGGAGGTGTGGTC
CCAGCTAGCTGGACGCATAGATGACAAAATTCTGTACACACTGGTTTTGC
AAATGGCCAAAGAACTACAAAAGCAACAGCTGCGACTCATTTTGGTCATT
CCTCCATTCCGCAAGGAAACAGGCCACCTTTTTGGAGAAAAGCACATGGA
CAAGCTGTTCAAGCACATATACGCCTTCTCTCTGATGACTTACGACTTCT
CCAGCGTGCAGCGTCCCGGAGCAAATGCACCATTATATTTCGTCCGTAAG
GCTGTGGAGACAATAGCTCCAGAAGGTTGCGCTGATATGACGGCTAAGAG
GGCTAAAATTCTGTTGGGACTGAATATGTACGGGAATGATTACACGCCCG
ATGGAGGTGGACCCATCACCTTCTCCCAGTACTTGGATCTAGTCAGGCAT
GTGAAGAAGCACCTAACTTACGATGAGCGGGATGTGGAAAATTTCTTTGA
AATCAAAAACGATGACGGTCGCCACATTGTCTTTTATCCCACTCTCTATT
CCATAAACGAGCGAATAAAGCTCGCCCAGGAACTGGGCACTGGCATTTCA
ATCTGGGAACTTGGCCAAGGCCTAAACTATTTTTACGATCTCTTCTAGTT
AGCCTGTAAGCAGCATGCAATGCACAATACCTATTCCAAATAAAGGAAAT
TATATATAAAAAAAAAAAAAAAAAA

LD18607.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8460-RA 1463 CG8460-RA 132..1440 1..1309 6545 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8197144..8197544 706..1106 2005 100 Plus
chr2L 23010047 chr2L 8196250..8196561 1..312 1545 99.7 Plus
chr2L 23010047 chr2L 8196873..8197078 501..706 1030 100 Plus
chr2L 23010047 chr2L 8197605..8197809 1103..1307 995 99 Plus
chr2L 23010047 chr2L 8196628..8196817 313..502 920 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:05:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8198148..8198548 706..1106 2005 100 Plus
2L 23513712 2L 8197254..8197565 1..312 1560 100 Plus
2L 23513712 2L 8197877..8198082 501..706 1030 100 Plus
2L 23513712 2L 8198609..8198815 1103..1309 1020 99.5 Plus
2L 23513712 2L 8197632..8197821 313..502 950 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8198148..8198548 706..1106 2005 100 Plus
2L 23513712 2L 8197254..8197565 1..312 1560 100 Plus
2L 23513712 2L 8197877..8198082 501..706 1030 100 Plus
2L 23513712 2L 8198609..8198815 1103..1309 1020 99.5 Plus
2L 23513712 2L 8197632..8197821 313..502 950 100 Plus
Blast to na_te.dros performed on 2019-03-16 06:37:51 has no hits.

LD18607.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:38:49 Download gff for LD18607.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8196250..8196561 1..312 99 -> Plus
chr2L 8196628..8196817 313..502 98 -> Plus
chr2L 8196875..8197078 503..706 100 -> Plus
chr2L 8197145..8197544 707..1106 100 -> Plus
chr2L 8197609..8197809 1107..1307 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:53:06 Download gff for LD18607.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 1..1209 40..1248 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:40 Download gff for LD18607.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 1..1209 40..1248 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:39:16 Download gff for LD18607.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 1..1209 40..1248 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:27 Download gff for LD18607.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 1..1209 40..1248 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:21:53 Download gff for LD18607.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 1..1209 40..1248 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:28:57 Download gff for LD18607.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 59..1365 1..1307 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:40 Download gff for LD18607.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 59..1365 1..1307 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:39:16 Download gff for LD18607.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 62..1368 1..1307 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:27 Download gff for LD18607.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 59..1365 1..1307 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:21:53 Download gff for LD18607.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 62..1368 1..1307 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:49 Download gff for LD18607.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8197879..8198082 503..706 100 -> Plus
2L 8197632..8197821 313..502 100 -> Plus
2L 8197254..8197565 1..312 100 -> Plus
2L 8198149..8198548 707..1106 100 -> Plus
2L 8198613..8198813 1107..1307 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:49 Download gff for LD18607.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8197879..8198082 503..706 100 -> Plus
2L 8197632..8197821 313..502 100 -> Plus
2L 8197254..8197565 1..312 100 -> Plus
2L 8198149..8198548 707..1106 100 -> Plus
2L 8198613..8198813 1107..1307 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:49 Download gff for LD18607.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8197879..8198082 503..706 100 -> Plus
2L 8197632..8197821 313..502 100 -> Plus
2L 8197254..8197565 1..312 100 -> Plus
2L 8198149..8198548 707..1106 100 -> Plus
2L 8198613..8198813 1107..1307 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:39:16 Download gff for LD18607.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8197254..8197565 1..312 100 -> Plus
arm_2L 8197632..8197821 313..502 100 -> Plus
arm_2L 8197879..8198082 503..706 100 -> Plus
arm_2L 8198149..8198548 707..1106 100 -> Plus
arm_2L 8198613..8198813 1107..1307 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:51:11 Download gff for LD18607.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8197254..8197565 1..312 100 -> Plus
2L 8197632..8197821 313..502 100 -> Plus
2L 8197879..8198082 503..706 100 -> Plus
2L 8198149..8198548 707..1106 100 -> Plus
2L 8198613..8198813 1107..1307 100   Plus

LD18607.hyp Sequence

Translation from 0 to 1247

> LD18607.hyp
CDLCCGPDCPSVEMRAPDALLLRVALLLLLLTTVRGTLAPDSHKSKSKTK
ESALRGGPQDQDVFDLGLVSPEPLAKDIVSNHRGYFKETGLRRFNGTTLG
YVTPWNSHGYDVAKIFAKKFDIISPVWLQIVKQGDRYAVAGTHDIDAGWL
TDVRRKGKQVHNQRTVKVFPRFIFDHFTDRDIKLLLSDAQERTKVNDVLI
KCCKDNGFDGLVLEVWSQLAGRIDDKILYTLVLQMAKELQKQQLRLILVI
PPFRKETGHLFGEKHMDKLFKHIYAFSLMTYDFSSVQRPGANAPLYFVRK
AVETIAPEGCADMTAKRAKILLGLNMYGNDYTPDGGGPITFSQYLDLVRH
VKKHLTYDERDVENFFEIKNDDGRHIVFYPTLYSINERIKLAQELGTGIS
IWELGQGLNYFYDLF*

LD18607.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8460-PA 402 CG8460-PA 1..402 14..415 2112 100 Plus

LD18607.pep Sequence

Translation from 39 to 1247

> LD18607.pep
MRAPDALLLRVALLLLLLTTVRGTLAPDSHKSKSKTKESALRGGPQDQDV
FDLGLVSPEPLAKDIVSNHRGYFKETGLRRFNGTTLGYVTPWNSHGYDVA
KIFAKKFDIISPVWLQIVKQGDRYAVAGTHDIDAGWLTDVRRKGKQVHNQ
RTVKVFPRFIFDHFTDRDIKLLLSDAQERTKVNDVLIKCCKDNGFDGLVL
EVWSQLAGRIDDKILYTLVLQMAKELQKQQLRLILVIPPFRKETGHLFGE
KHMDKLFKHIYAFSLMTYDFSSVQRPGANAPLYFVRKAVETIAPEGCADM
TAKRAKILLGLNMYGNDYTPDGGGPITFSQYLDLVRHVKKHLTYDERDVE
NFFEIKNDDGRHIVFYPTLYSINERIKLAQELGTGISIWELGQGLNYFYD
LF*

LD18607.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14623-PA 402 GF14623-PA 1..402 1..402 1871 88.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10520-PA 402 GG10520-PA 1..402 1..402 2023 96.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11509-PA 401 GH11509-PA 9..401 11..402 1538 74.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8460-PA 402 CG8460-PA 1..402 1..402 2112 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\moj30-PA 400 GI17005-PA 1..400 1..402 1634 77 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18725-PA 403 GL18725-PA 1..403 1..402 1803 85.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21094-PB 403 GA21094-PB 1..403 1..402 1803 85.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16819-PA 402 GM16819-PA 1..402 1..402 2112 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23511-PA 402 GD23511-PA 1..402 1..402 2130 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24303-PA 402 GJ24303-PA 1..402 1..402 1652 77.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15155-PA 399 GK15155-PA 3..399 6..402 1680 79.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18741-PA 402 GE18741-PA 1..402 1..402 2093 97.3 Plus