BDGP Sequence Production Resources |
Search the DGRC for LD18634
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 186 |
Well: | 34 |
Vector: | pBS SK- |
Associated Gene/Transcript | nerfin-1-RA |
Protein status: | LD18634.pep: gold |
Preliminary Size: | 3110 |
Sequenced Size: | 3199 |
Gene | Date | Evidence |
---|---|---|
CG13906 | 2001-01-01 | Release 2 assignment |
CG13906 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13906 | 2003-03-10 | Blastp of sequenced clone |
nerfin-1 | 2008-04-29 | Release 5.5 accounting |
nerfin-1 | 2008-08-15 | Release 5.9 accounting |
nerfin-1 | 2008-12-18 | 5.12 accounting |
3199 bp (3199 high quality bases) assembled on 2003-03-10
GenBank Submission: BT005200
> LD18634.complete TCGAGCCGACTGGAGGTCTTCTGCATAGAGTCCCAGTCCGCGAGGATCAG CGTTATCAGTTTGTTGTTAAGTTTGCTTAGTTCCCGTTCTACGTTCCCCG TTCTACTCCGTTTTCGTTTTGCCTCGTTGAAGTTTTAAGTTGAAAGTCCC ATCGATGCCATGGCCCAGATACAGACACCGATACCGATTCCAGCCCCCGC GGAGCCCATTGAAAAGCTCAGCCACCCGCACAGCATTGGCATCCAGTTGC AGCACAAGGGGATGCCCCATGGCCTGGGCCTGCTGACCACAGTGGCCTCG CTGCCCCCCAAGTACCGCAGTCGATATCTGAACCTGAAAACCAGGTGCGA AATACCGCTGGATCTAACGCTGAAGCTTCCCTCACCACTGCCCAGCAGCG ATGTGCCCATGGCGGCCACATTCGCGGAGGTCTATAGCGAAAATACGAGT GCTAGTTCCAGCGAGGTGCAGGGGGAGGTGACCAAGGTGGAGGAGCTGCC GGTGAAGCCCCCAACACCACCGCAGAGTCCAGCAGGGAAGCGTAAATTGA GCCGGGAGAGCTATGACGACGAGCCGGCTAAAATGGCCAAAAAGGAGGAG GAGGTTCCGGTGGAAACAGTAGAATCCACACCAGCGAAACCCGTCAAAGT GGCAGAATCTGCGCCTAAAACCAACAAGGCCTCCACTTCCTCGGGAAAGC CCTCCCGCAATAAAGCCACCCGCAAGCTGAAGTTCGATGAGGAGACCAGT TCCCCCGTCTCGGGCACCGTCATCCGACCGCTCGAGGACATCACCGATGG ATCGATGCAGTACAGCAACGGCGACATTGACCCCAAGTACAACATAGTCG AGATCACGGAGGAGACCAAGGCGGAACTGGCCGCCATCAAGAACGTGATC GGGGACTATGTCTGCCGACTGTGCAAGATCAAGTTCGAGGACGCCTTCGG CCTGGCCCGGCACAGGTGCGCCTGCATCGTCCTGCTGGAGTACCGGTGTC CCGAGTGCGGCAAGCAGTTCAATTGTCCTGCTAACTTGGCCTCCCATCGC CGGTGGCACAAGCCGAGGAAGGAGGCGTCTAAAAAGGAGAATCGCAATAC CACCAACCAGCCGGAGAAACAGCAGCAGGTGGAGAAAAAGTCGGAGGAGG AACTGGCCTTCGATTGCCAGGAGTGCGGCAAGAAGTTTAAGAGAGCCGCC TACCTGAGGAAGCACCAGCTGACCCATCAGAAAAAGGAAAAGCCAGCGGA AAAACAGTTGGAAATGAAGCCCACCACCACAACTATCACAGGCAGTTTTC ACTTTAACCAGGCGGTGTCCACCTCCTCCTCCGCCAGCAGTTCGCACTCC GATGAGGGAGTCTACGTGGTGGGATCGAATGCCAGGGAGAACTACGACTA TGACAACGACTACCTCTCGGACTCCAGCTCCTCCGCCTCATCTGCGGGAT ACGGACGGCTTCAGATTGTGGAACATGGTCTCACGGAGGAGGAAAGCATT GCTGCCGCAGCTCTGACCAACTTGAGGAACTGCGCCTCCGTCATCCAACA CACAACCATGGCCCACTGAAATCGAGTGAGATTTATTTTTAATGTTAAGT TTAGTTTCTAGTTGAACACCAAACCCGATGCAGCTGAAACAGACCAAAGA AATAGTTATATTCCACGGAAATTTCGTTTTCCACTTCGTATTCTTAGTTA GCTATAAAATTTAGTTCTTAACCGATTCAGTTTCGTTCGCAAAATGAGTT CAATTCTAGTTAGACTCTAGTTTGTATCCGTACTTCGGCCCACATTCCAC ACGGCAATTTAGTTGTAACTTAATTTCTAGTCAGTGAATCCAAAGAATCT TGGCACTAGTCAGCTTCAATACGATCTCGAAAAGAGTGTCTCTTGTGTAC CACGAAGGCATTTCTATTAGTCTCTAGATTTAGCTAGTTTAGGAACTTTT GGGAGTGCAATGAACCTACAACGAAAGCCAAAGCAACCAACCAAAGATTT ATAACTAATACTAGTCAGTCATATATCCATCTACTCCTTTGCTCCTACAT CATCCCATGACATCATTCATCACCCATATCATCCTTCATTCTTCTTACTA CTAATCATCCCATAGCTTTTCACACTTTCATACCAATTTCCTCATGACTC ACTCTCATCCTGTATCATCTTTGCATTTTTTGCTAATCATTTTCCAGTTA ATATTCTACCCTTAATTCAACCCTTTAACAACTTTTTCAATCTGGAAATT TCTCGTCATTCTAGTCACAAGTTCTTGCATTCCTTCTAGTCACTTAGGAT AAATCATCTCTATAAGTCAGCTTCAGTTCGATCTTACTAAGTTTGTACAA ACATATATCGTTCTTCAATTTCGGATACAGCTTTAGTCATATTCAGGTTA TATACCGAAACCAAAATTCAGGCAAAATTGTGCAGTAATAGTGTTTAAGT TCGAATCAAACCAAAAAGCAAACCAAATCCTAGTTTAAAGCAAATTCAAG CCCAGTGTTTGTGAACCAAAGTCGAGTGTGAGCTCTAGTCATTTTAGCCA CCTAATCAAGCGGAATCAGCTTGTTCTCAGTTTAGTTTAGTTAGTTAAGT TAGGCATAGAAACGGACATTGGACCAGCGTCTCACTACCAGTCAAAGTAT TGAACAGTACAACCTAGCTATAAGGGCCACAGGCTTCAGAACCGGCGGTT GTGTACTTAAAGCAATAAAATAAGTAATCCCCGATATCGGGACAATATCA CAGCGCTATTGTTCCTTAGCATCAGTATGTGTAAATTGGTTGTAACCGCA GAGTACAACGAAAAGGGAAACTTTCGCTCAATCTAGGAATTAACTAACTC TAAGCTATATCATACATGTAACCATATCGGTTGAGATTTTGTGATACTAC AGTCTAAGCTTCAAGTTTACAAGAGAATCGTTGCGCTCGATTGTGCATTA ACAATAAGCTAAGAGGAGACAGATCATTGAACCAAGTATTTTTATACGTA ATATACACCATATATTTTTATACAAAAACAAACTCTTGAAGACCTTTTTT AATTATATGATGTCTAAGATGTAATCGACATATATTTATCGGAAACCAAT ATATTTTTATACAAAACCCAATCTTGGAAAACCCATAAAAATTGTAAATT ATAAAAGCTCTTGAATAAAAACGCAAAACTGAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nerfin-1-RA | 3181 | nerfin-1-RA | 1..3181 | 1..3181 | 15905 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 908975..912158 | 1..3181 | 15240 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 909139..912323 | 1..3185 | 15925 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 909139..912323 | 1..3185 | 15925 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 908975..912158 | 1..3181 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nerfin-1-RA | 1..1410 | 160..1569 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nerfin-1-RA | 1..1410 | 160..1569 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nerfin-1-RA | 1..1410 | 160..1569 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nerfin-1-RA | 1..1410 | 160..1569 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nerfin-1-RA | 1..1410 | 160..1569 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nerfin-1-RA | 1..3181 | 1..3181 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nerfin-1-RA | 1..3181 | 1..3181 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nerfin-1-RA | 28..3208 | 1..3181 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nerfin-1-RA | 1..3181 | 1..3181 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nerfin-1-RA | 28..3208 | 1..3181 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 909139..912319 | 1..3181 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 909139..912319 | 1..3181 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 909139..912319 | 1..3181 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 909139..912319 | 1..3181 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 909139..912319 | 1..3181 | 100 | Plus |
Translation from 159 to 1568
> LD18634.pep MAQIQTPIPIPAPAEPIEKLSHPHSIGIQLQHKGMPHGLGLLTTVASLPP KYRSRYLNLKTRCEIPLDLTLKLPSPLPSSDVPMAATFAEVYSENTSASS SEVQGEVTKVEELPVKPPTPPQSPAGKRKLSRESYDDEPAKMAKKEEEVP VETVESTPAKPVKVAESAPKTNKASTSSGKPSRNKATRKLKFDEETSSPV SGTVIRPLEDITDGSMQYSNGDIDPKYNIVEITEETKAELAAIKNVIGDY VCRLCKIKFEDAFGLARHRCACIVLLEYRCPECGKQFNCPANLASHRRWH KPRKEASKKENRNTTNQPEKQQQVEKKSEEELAFDCQECGKKFKRAAYLR KHQLTHQKKEKPAEKQLEMKPTTTTITGSFHFNQAVSTSSSASSSHSDEG VYVVGSNARENYDYDNDYLSDSSSSASSAGYGRLQIVEHGLTEEESIAAA ALTNLRNCASVIQHTTMAH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24423-PA | 499 | GF24423-PA | 1..499 | 1..469 | 1737 | 73.4 | Plus |
Dana\GF17857-PA | 733 | GF17857-PA | 388..570 | 183..360 | 489 | 51.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14748-PA | 471 | GG14748-PA | 1..471 | 1..469 | 2237 | 94.9 | Plus |
Dere\GG17401-PA | 718 | GG17401-PA | 414..590 | 183..357 | 479 | 50.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16871-PA | 515 | GH16871-PA | 45..515 | 43..469 | 1436 | 64.8 | Plus |
Dgri\GH14246-PA | 668 | GH14246-PA | 349..533 | 183..360 | 480 | 50.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nerfin-1-PA | 469 | CG13906-PA | 1..469 | 1..469 | 2434 | 100 | Plus |
nerfin-2-PA | 695 | CG12809-PA | 334..567 | 90..357 | 482 | 39.3 | Plus |
nerfin-2-PB | 775 | CG12809-PB | 334..567 | 90..357 | 482 | 39.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11431-PA | 511 | GI11431-PA | 50..511 | 43..469 | 1467 | 68.1 | Plus |
Dmoj\GI23139-PA | 707 | GI23139-PA | 393..577 | 193..357 | 454 | 47.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27209-PA | 736 | GL27209-PA | 424..608 | 183..360 | 477 | 50.3 | Plus |
Dper\GL16921-PA | 103 | GL16921-PA | 24..80 | 20..76 | 274 | 87.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12616-PA | 544 | GA12616-PA | 28..544 | 20..469 | 1400 | 61 | Plus |
Dpse\GA11823-PA | 743 | GA11823-PA | 432..616 | 183..360 | 477 | 50.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14366-PA | 469 | GM14366-PA | 1..469 | 1..469 | 2422 | 97.2 | Plus |
Dsec\GM23861-PA | 562 | GM23861-PA | 398..562 | 183..345 | 440 | 51.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13584-PA | 469 | GD13584-PA | 1..469 | 1..469 | 2247 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13627-PA | 503 | GJ13627-PA | 46..503 | 43..469 | 1485 | 68.3 | Plus |
Dvir\GJ10441-PA | 681 | GJ10441-PA | 366..553 | 183..357 | 477 | 51.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10878-PA | 656 | GK10878-PA | 398..580 | 183..360 | 489 | 50.3 | Plus |
Translation from 159 to 1568
> LD18634.hyp MAQIQTPIPIPAPAEPIEKLSHPHSIGIQLQHKGMPHGLGLLTTVASLPP KYRSRYLNLKTRCEIPLDLTLKLPSPLPSSDVPMAATFAEVYSENTSASS SEVQGEVTKVEELPVKPPTPPQSPAGKRKLSRESYDDEPAKMAKKEEEVP VETVESTPAKPVKVAESAPKTNKASTSSGKPSRNKATRKLKFDEETSSPV SGTVIRPLEDITDGSMQYSNGDIDPKYNIVEITEETKAELAAIKNVIGDY VCRLCKIKFEDAFGLARHRCACIVLLEYRCPECGKQFNCPANLASHRRWH KPRKEASKKENRNTTNQPEKQQQVEKKSEEELAFDCQECGKKFKRAAYLR KHQLTHQKKEKPAEKQLEMKPTTTTITGSFHFNQAVSTSSSASSSHSDEG VYVVGSNARENYDYDNDYLSDSSSSASSAGYGRLQIVEHGLTEEESIAAA ALTNLRNCASVIQHTTMAH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nerfin-1-PA | 469 | CG13906-PA | 1..469 | 1..469 | 2434 | 100 | Plus |
nerfin-2-PA | 695 | CG12809-PA | 334..567 | 90..357 | 482 | 39.3 | Plus |
nerfin-2-PB | 775 | CG12809-PB | 334..567 | 90..357 | 482 | 39.3 | Plus |