Clone LD18634 Report

Search the DGRC for LD18634

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:186
Well:34
Vector:pBS SK-
Associated Gene/Transcriptnerfin-1-RA
Protein status:LD18634.pep: gold
Preliminary Size:3110
Sequenced Size:3199

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13906 2001-01-01 Release 2 assignment
CG13906 2003-01-01 Sim4 clustering to Release 3
CG13906 2003-03-10 Blastp of sequenced clone
nerfin-1 2008-04-29 Release 5.5 accounting
nerfin-1 2008-08-15 Release 5.9 accounting
nerfin-1 2008-12-18 5.12 accounting

Clone Sequence Records

LD18634.complete Sequence

3199 bp (3199 high quality bases) assembled on 2003-03-10

GenBank Submission: BT005200

> LD18634.complete
TCGAGCCGACTGGAGGTCTTCTGCATAGAGTCCCAGTCCGCGAGGATCAG
CGTTATCAGTTTGTTGTTAAGTTTGCTTAGTTCCCGTTCTACGTTCCCCG
TTCTACTCCGTTTTCGTTTTGCCTCGTTGAAGTTTTAAGTTGAAAGTCCC
ATCGATGCCATGGCCCAGATACAGACACCGATACCGATTCCAGCCCCCGC
GGAGCCCATTGAAAAGCTCAGCCACCCGCACAGCATTGGCATCCAGTTGC
AGCACAAGGGGATGCCCCATGGCCTGGGCCTGCTGACCACAGTGGCCTCG
CTGCCCCCCAAGTACCGCAGTCGATATCTGAACCTGAAAACCAGGTGCGA
AATACCGCTGGATCTAACGCTGAAGCTTCCCTCACCACTGCCCAGCAGCG
ATGTGCCCATGGCGGCCACATTCGCGGAGGTCTATAGCGAAAATACGAGT
GCTAGTTCCAGCGAGGTGCAGGGGGAGGTGACCAAGGTGGAGGAGCTGCC
GGTGAAGCCCCCAACACCACCGCAGAGTCCAGCAGGGAAGCGTAAATTGA
GCCGGGAGAGCTATGACGACGAGCCGGCTAAAATGGCCAAAAAGGAGGAG
GAGGTTCCGGTGGAAACAGTAGAATCCACACCAGCGAAACCCGTCAAAGT
GGCAGAATCTGCGCCTAAAACCAACAAGGCCTCCACTTCCTCGGGAAAGC
CCTCCCGCAATAAAGCCACCCGCAAGCTGAAGTTCGATGAGGAGACCAGT
TCCCCCGTCTCGGGCACCGTCATCCGACCGCTCGAGGACATCACCGATGG
ATCGATGCAGTACAGCAACGGCGACATTGACCCCAAGTACAACATAGTCG
AGATCACGGAGGAGACCAAGGCGGAACTGGCCGCCATCAAGAACGTGATC
GGGGACTATGTCTGCCGACTGTGCAAGATCAAGTTCGAGGACGCCTTCGG
CCTGGCCCGGCACAGGTGCGCCTGCATCGTCCTGCTGGAGTACCGGTGTC
CCGAGTGCGGCAAGCAGTTCAATTGTCCTGCTAACTTGGCCTCCCATCGC
CGGTGGCACAAGCCGAGGAAGGAGGCGTCTAAAAAGGAGAATCGCAATAC
CACCAACCAGCCGGAGAAACAGCAGCAGGTGGAGAAAAAGTCGGAGGAGG
AACTGGCCTTCGATTGCCAGGAGTGCGGCAAGAAGTTTAAGAGAGCCGCC
TACCTGAGGAAGCACCAGCTGACCCATCAGAAAAAGGAAAAGCCAGCGGA
AAAACAGTTGGAAATGAAGCCCACCACCACAACTATCACAGGCAGTTTTC
ACTTTAACCAGGCGGTGTCCACCTCCTCCTCCGCCAGCAGTTCGCACTCC
GATGAGGGAGTCTACGTGGTGGGATCGAATGCCAGGGAGAACTACGACTA
TGACAACGACTACCTCTCGGACTCCAGCTCCTCCGCCTCATCTGCGGGAT
ACGGACGGCTTCAGATTGTGGAACATGGTCTCACGGAGGAGGAAAGCATT
GCTGCCGCAGCTCTGACCAACTTGAGGAACTGCGCCTCCGTCATCCAACA
CACAACCATGGCCCACTGAAATCGAGTGAGATTTATTTTTAATGTTAAGT
TTAGTTTCTAGTTGAACACCAAACCCGATGCAGCTGAAACAGACCAAAGA
AATAGTTATATTCCACGGAAATTTCGTTTTCCACTTCGTATTCTTAGTTA
GCTATAAAATTTAGTTCTTAACCGATTCAGTTTCGTTCGCAAAATGAGTT
CAATTCTAGTTAGACTCTAGTTTGTATCCGTACTTCGGCCCACATTCCAC
ACGGCAATTTAGTTGTAACTTAATTTCTAGTCAGTGAATCCAAAGAATCT
TGGCACTAGTCAGCTTCAATACGATCTCGAAAAGAGTGTCTCTTGTGTAC
CACGAAGGCATTTCTATTAGTCTCTAGATTTAGCTAGTTTAGGAACTTTT
GGGAGTGCAATGAACCTACAACGAAAGCCAAAGCAACCAACCAAAGATTT
ATAACTAATACTAGTCAGTCATATATCCATCTACTCCTTTGCTCCTACAT
CATCCCATGACATCATTCATCACCCATATCATCCTTCATTCTTCTTACTA
CTAATCATCCCATAGCTTTTCACACTTTCATACCAATTTCCTCATGACTC
ACTCTCATCCTGTATCATCTTTGCATTTTTTGCTAATCATTTTCCAGTTA
ATATTCTACCCTTAATTCAACCCTTTAACAACTTTTTCAATCTGGAAATT
TCTCGTCATTCTAGTCACAAGTTCTTGCATTCCTTCTAGTCACTTAGGAT
AAATCATCTCTATAAGTCAGCTTCAGTTCGATCTTACTAAGTTTGTACAA
ACATATATCGTTCTTCAATTTCGGATACAGCTTTAGTCATATTCAGGTTA
TATACCGAAACCAAAATTCAGGCAAAATTGTGCAGTAATAGTGTTTAAGT
TCGAATCAAACCAAAAAGCAAACCAAATCCTAGTTTAAAGCAAATTCAAG
CCCAGTGTTTGTGAACCAAAGTCGAGTGTGAGCTCTAGTCATTTTAGCCA
CCTAATCAAGCGGAATCAGCTTGTTCTCAGTTTAGTTTAGTTAGTTAAGT
TAGGCATAGAAACGGACATTGGACCAGCGTCTCACTACCAGTCAAAGTAT
TGAACAGTACAACCTAGCTATAAGGGCCACAGGCTTCAGAACCGGCGGTT
GTGTACTTAAAGCAATAAAATAAGTAATCCCCGATATCGGGACAATATCA
CAGCGCTATTGTTCCTTAGCATCAGTATGTGTAAATTGGTTGTAACCGCA
GAGTACAACGAAAAGGGAAACTTTCGCTCAATCTAGGAATTAACTAACTC
TAAGCTATATCATACATGTAACCATATCGGTTGAGATTTTGTGATACTAC
AGTCTAAGCTTCAAGTTTACAAGAGAATCGTTGCGCTCGATTGTGCATTA
ACAATAAGCTAAGAGGAGACAGATCATTGAACCAAGTATTTTTATACGTA
ATATACACCATATATTTTTATACAAAAACAAACTCTTGAAGACCTTTTTT
AATTATATGATGTCTAAGATGTAATCGACATATATTTATCGGAAACCAAT
ATATTTTTATACAAAACCCAATCTTGGAAAACCCATAAAAATTGTAAATT
ATAAAAGCTCTTGAATAAAAACGCAAAACTGAAAAAAAAAAAAAAAAAA

LD18634.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
nerfin-1-RA 3181 nerfin-1-RA 1..3181 1..3181 15905 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 908975..912158 1..3181 15240 98.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:06:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 909139..912323 1..3185 15925 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 909139..912323 1..3185 15925 100 Plus
Blast to na_te.dros performed 2019-03-15 23:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
Juan 4236 Juan JUAN 4236bp 4049..4236 2989..3178 135 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6842 1082..1153 118 66.7 Plus

LD18634.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:53:22 Download gff for LD18634.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 908975..912158 1..3181 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:53:08 Download gff for LD18634.complete
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 1..1410 160..1569 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:46:30 Download gff for LD18634.complete
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 1..1410 160..1569 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:53:43 Download gff for LD18634.complete
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 1..1410 160..1569 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:37:58 Download gff for LD18634.complete
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 1..1410 160..1569 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:49:59 Download gff for LD18634.complete
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 1..1410 160..1569 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:57:58 Download gff for LD18634.complete
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 1..3181 1..3181 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:46:30 Download gff for LD18634.complete
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 1..3181 1..3181 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:53:43 Download gff for LD18634.complete
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 28..3208 1..3181 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:37:58 Download gff for LD18634.complete
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 1..3181 1..3181 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:49:59 Download gff for LD18634.complete
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 28..3208 1..3181 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:53:22 Download gff for LD18634.complete
Subject Subject Range Query Range Percent Splice Strand
3L 909139..912319 1..3181 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:53:22 Download gff for LD18634.complete
Subject Subject Range Query Range Percent Splice Strand
3L 909139..912319 1..3181 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:53:22 Download gff for LD18634.complete
Subject Subject Range Query Range Percent Splice Strand
3L 909139..912319 1..3181 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:53:43 Download gff for LD18634.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 909139..912319 1..3181 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:08:09 Download gff for LD18634.complete
Subject Subject Range Query Range Percent Splice Strand
3L 909139..912319 1..3181 100   Plus

LD18634.pep Sequence

Translation from 159 to 1568

> LD18634.pep
MAQIQTPIPIPAPAEPIEKLSHPHSIGIQLQHKGMPHGLGLLTTVASLPP
KYRSRYLNLKTRCEIPLDLTLKLPSPLPSSDVPMAATFAEVYSENTSASS
SEVQGEVTKVEELPVKPPTPPQSPAGKRKLSRESYDDEPAKMAKKEEEVP
VETVESTPAKPVKVAESAPKTNKASTSSGKPSRNKATRKLKFDEETSSPV
SGTVIRPLEDITDGSMQYSNGDIDPKYNIVEITEETKAELAAIKNVIGDY
VCRLCKIKFEDAFGLARHRCACIVLLEYRCPECGKQFNCPANLASHRRWH
KPRKEASKKENRNTTNQPEKQQQVEKKSEEELAFDCQECGKKFKRAAYLR
KHQLTHQKKEKPAEKQLEMKPTTTTITGSFHFNQAVSTSSSASSSHSDEG
VYVVGSNARENYDYDNDYLSDSSSSASSAGYGRLQIVEHGLTEEESIAAA
ALTNLRNCASVIQHTTMAH*

LD18634.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24423-PA 499 GF24423-PA 1..499 1..469 1737 73.4 Plus
Dana\GF17857-PA 733 GF17857-PA 388..570 183..360 489 51.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14748-PA 471 GG14748-PA 1..471 1..469 2237 94.9 Plus
Dere\GG17401-PA 718 GG17401-PA 414..590 183..357 479 50.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16871-PA 515 GH16871-PA 45..515 43..469 1436 64.8 Plus
Dgri\GH14246-PA 668 GH14246-PA 349..533 183..360 480 50.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
nerfin-1-PA 469 CG13906-PA 1..469 1..469 2434 100 Plus
nerfin-2-PA 695 CG12809-PA 334..567 90..357 482 39.3 Plus
nerfin-2-PB 775 CG12809-PB 334..567 90..357 482 39.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11431-PA 511 GI11431-PA 50..511 43..469 1467 68.1 Plus
Dmoj\GI23139-PA 707 GI23139-PA 393..577 193..357 454 47.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27209-PA 736 GL27209-PA 424..608 183..360 477 50.3 Plus
Dper\GL16921-PA 103 GL16921-PA 24..80 20..76 274 87.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12616-PA 544 GA12616-PA 28..544 20..469 1400 61 Plus
Dpse\GA11823-PA 743 GA11823-PA 432..616 183..360 477 50.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14366-PA 469 GM14366-PA 1..469 1..469 2422 97.2 Plus
Dsec\GM23861-PA 562 GM23861-PA 398..562 183..345 440 51.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13584-PA 469 GD13584-PA 1..469 1..469 2247 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13627-PA 503 GJ13627-PA 46..503 43..469 1485 68.3 Plus
Dvir\GJ10441-PA 681 GJ10441-PA 366..553 183..357 477 51.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10878-PA 656 GK10878-PA 398..580 183..360 489 50.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21110-PA 477 GE21110-PA 5..477 3..469 2294 93.5 Plus
Dyak\GE26012-PA 721 GE26012-PA 417..593 183..357 483 50.3 Plus

LD18634.hyp Sequence

Translation from 159 to 1568

> LD18634.hyp
MAQIQTPIPIPAPAEPIEKLSHPHSIGIQLQHKGMPHGLGLLTTVASLPP
KYRSRYLNLKTRCEIPLDLTLKLPSPLPSSDVPMAATFAEVYSENTSASS
SEVQGEVTKVEELPVKPPTPPQSPAGKRKLSRESYDDEPAKMAKKEEEVP
VETVESTPAKPVKVAESAPKTNKASTSSGKPSRNKATRKLKFDEETSSPV
SGTVIRPLEDITDGSMQYSNGDIDPKYNIVEITEETKAELAAIKNVIGDY
VCRLCKIKFEDAFGLARHRCACIVLLEYRCPECGKQFNCPANLASHRRWH
KPRKEASKKENRNTTNQPEKQQQVEKKSEEELAFDCQECGKKFKRAAYLR
KHQLTHQKKEKPAEKQLEMKPTTTTITGSFHFNQAVSTSSSASSSHSDEG
VYVVGSNARENYDYDNDYLSDSSSSASSAGYGRLQIVEHGLTEEESIAAA
ALTNLRNCASVIQHTTMAH*

LD18634.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
nerfin-1-PA 469 CG13906-PA 1..469 1..469 2434 100 Plus
nerfin-2-PA 695 CG12809-PA 334..567 90..357 482 39.3 Plus
nerfin-2-PB 775 CG12809-PB 334..567 90..357 482 39.3 Plus