Clone LD18667 Report

Search the DGRC for LD18667

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:186
Well:67
Vector:pBS SK-
Associated Gene/TranscriptCG33213-RA
Protein status:LD18667.pep: gold
Preliminary Size:1471
Sequenced Size:1249

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12260 2001-01-01 Release 2 assignment
CG33213 2001-10-10 Blastp of sequenced clone
CG33213 2008-04-29 Release 5.5 accounting
CG33213 2008-08-15 Release 5.9 accounting
CG33213 2008-12-18 5.12 accounting

Clone Sequence Records

LD18667.complete Sequence

1249 bp (1249 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061248

> LD18667.complete
AAAATTCGCGTCTTTTTATAAAAAGCAAGCGTAATTAATAACAAAAATAA
AATAAGTTCCAAGTAAAATGTGAATTCATTTTTCGGATACGTATCGATTT
AGTGCCATTTGAGAACCCCGAACCAACGAAATGTACCCGGCGCAACCGGC
AAAGGTGGCGTTGGCCGGTCAACCGATATCCGCCGGAAAACCACCACGCC
ACAGCCCTGTTCAGATGAAGTCTATCCCTTTGCCCGTCTTCGAGCTGCCG
GAATACGTGTGCGTGGAGACCAAGTGGGTGACACGCAAGTACGCGATAGA
GAATGGCATTCCAGTGAAAGAACTGCATGCCCCGATCACCAATGGAGGCG
CTACAGAGTCTCCCAAGAAATCCGTACAGCAGAAGAGACTCAACGAGGTC
ACTGGAATGTTTGCGAACGAGGCTATGGTGCCGCGCAGAGAGCGCGCCAT
TCAAACAGAGAATGCGGGCACTAAGGATGCGGGCATTCAATGCCGTCGCG
ATTCGGAGGAGTGGTATTTACCAGAGGAACGGCCAAAGGATACCGGTTCT
GAGGCCTCCAATTCCGACAAATTTCTCACCTACGTGAGCGAGAACACATT
CATATTTCCCAACGGCATGATGGAGTGCGCGGTGTGCGGCGATGTGGCCA
AAACCTTGCTGGAGCACCAGAGCCACATGACCGCGCACTATGGACCTGGT
GCTCTGTGCTTTCGCTGTGGTCAGCGTCTGGACCACCAGAAACAATTGAA
GCAACACAGTCTGAGCTGTCCCGCTCTAGCGCCCAGGAAGTCATCGATGC
TCTTTAAATGCCCACATCTACTCTGCAACGCCATGAGCCACTCAGAGATG
CAGTTGCTCAGGCACCTGAGAAACCATAGCGGCAGGAAGTGCTACAGATG
TCTTCAGTGCAAACGTTACTTCAAGACCACCACCTCTCTTTTGGTACACC
GAAAAAAAGAACAGAGTTGTGCCAAGGCGAAAGTGGTCGTCCTATTTCGC
GAACACAACGGGTTGCCCAATGGAAGAGGTGATCCCAGACGTTGCTCAGT
TTGCTTGAAGCGTTTCAGCAGCGAGCGGGTATGCCTGCGGCACCGGAGAC
AGTGCATCCTTGGCCATTTTAGACGGCTGTCCAGGGTCCTCAAGAAGGAG
CTATGAACAGCGTATAGAAATCTTGACCTAGCTGGTATTTATTAGTACAT
AGAAATCGATAACAATAAAGCGAATAGATCCTAAAAAAAAAAAAAAAAA

LD18667.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG33213-RA 1269 CG33213-RA 33..1265 1..1233 6165 100 Plus
CG33221-RA 1399 CG33221-RA 589..1390 431..1232 3275 93.8 Plus
CG33221-RA 1399 CG33221-RA 331..588 155..412 810 87.5 Plus
CG33221-RA 1399 CG33221-RA 88..282 218..412 690 90.2 Plus
mRpS22-RA 1340 mRpS22-RA 1273..1340 1233..1166 340 100 Minus
CG33221-RA 1399 CG33221-RA 1..66 131..196 285 95.4 Plus
CG33221-RA 1399 CG33221-RA 283..335 431..483 235 96.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 23741143..23742374 1232..1 6100 99.7 Minus
chrX 22417052 chrX 3690902..3691961 1232..155 3870 90.8 Minus
chrU 10048995 chrU 6015775..6016834 155..1232 3870 90.8 Plus
chrX 22417052 chrX 3691957..3692302 483..120 975 85.2 Minus
chrU 10048995 chrU 6015434..6015779 120..483 975 85.2 Plus
chrX 22417052 chrX 3692305..3692388 83..1 265 90.5 Minus
chrU 10048995 chrU 6015348..6015431 1..83 265 90.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 19:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
CR42196-RA 1399 CR42196-RA 589..1390 431..1232 3275 93.8 Plus
CR42196-RA 1399 CR42196-RA 331..588 155..412 810 87.5 Plus
CR42196-RA 1399 CR42196-RA 88..282 218..412 690 90.2 Plus
CR42196-RA 1399 CR42196-RA 1..66 131..196 285 95.4 Plus
CR42196-RA 1399 CR42196-RA 283..335 431..483 235 96.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27918181..27919413 1233..1 6165 100 Minus
X 23542271 X 3797506..3798565 1232..155 3870 90.8 Minus
X 23542271 X 3798561..3798906 483..120 975 85.2 Minus
X 23542271 X 3798909..3798992 83..1 265 90.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 27659012..27660244 1233..1 6165 100 Minus
X 23527363 X 3805604..3806405 1232..431 3275 93.8 Minus
X 23527363 X 3806712..3806906 412..218 690 90.2 Minus
X 23527363 X 3806406..3806600 412..218 675 89.7 Minus
X 23527363 X 3806928..3807004 196..120 325 94.8 Minus
X 23527363 X 3807007..3807090 83..1 275 90.4 Minus
X 23527363 X 3806659..3806711 483..431 235 96.2 Minus
X 23527363 X 3806610..3806663 208..155 195 90.7 Minus
Blast to na_te.dros performed 2019-03-16 11:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 6959..7032 20..92 124 66.7 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3347..3396 22..70 112 74.5 Plus

LD18667.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:53:29 Download gff for LD18667.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 23741143..23742374 1..1232 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:53:09 Download gff for LD18667.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 1..1026 131..1156 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:43 Download gff for LD18667.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 1..1026 131..1156 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:37:11 Download gff for LD18667.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 1..1026 131..1156 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:30 Download gff for LD18667.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 1..1026 131..1156 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:12 Download gff for LD18667.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 1..1026 131..1156 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 19:06:03 Download gff for LD18667.complete
Subject Subject Range Query Range Percent Splice Strand
CR42196-RA 126..283 256..414 92 -- Plus
CR42196-RA 574..1390 415..1232 93   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:29:01 Download gff for LD18667.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 33..1264 1..1232 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:43 Download gff for LD18667.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 33..1264 1..1232 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:37:11 Download gff for LD18667.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 61..1292 1..1232 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:30 Download gff for LD18667.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 33..1264 1..1232 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:12 Download gff for LD18667.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 48..1279 1..1232 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:53:29 Download gff for LD18667.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27918182..27919413 1..1232 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:53:29 Download gff for LD18667.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27918182..27919413 1..1232 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:53:29 Download gff for LD18667.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27918182..27919413 1..1232 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:37:11 Download gff for LD18667.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23743904..23745135 1..1232 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:51:14 Download gff for LD18667.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27659013..27660244 1..1232 100   Minus

LD18667.pep Sequence

Translation from 130 to 1155

> LD18667.pep
MYPAQPAKVALAGQPISAGKPPRHSPVQMKSIPLPVFELPEYVCVETKWV
TRKYAIENGIPVKELHAPITNGGATESPKKSVQQKRLNEVTGMFANEAMV
PRRERAIQTENAGTKDAGIQCRRDSEEWYLPEERPKDTGSEASNSDKFLT
YVSENTFIFPNGMMECAVCGDVAKTLLEHQSHMTAHYGPGALCFRCGQRL
DHQKQLKQHSLSCPALAPRKSSMLFKCPHLLCNAMSHSEMQLLRHLRNHS
GRKCYRCLQCKRYFKTTTSLLVHRKKEQSCAKAKVVVLFREHNGLPNGRG
DPRRCSVCLKRFSSERVCLRHRRQCILGHFRRLSRVLKKEL*

LD18667.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18682-PA 324 GF18682-PA 2..310 27..333 701 46 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12086-PA 341 GG12086-PA 1..341 1..341 1343 72.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG33213-PA 341 CG33213-PA 1..341 1..341 1832 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10731-PA 266 GI10731-PA 16..261 94..337 445 41.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13758-PA 335 GL13758-PA 9..330 26..339 645 41.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17373-PA 335 GA17373-PA 6..330 23..339 637 41.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16315-PA 341 GM16315-PA 1..341 1..341 1564 84.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18052-PA 179 GD18052-PA 1..179 163..341 842 87.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10674-PA 323 GJ10674-PA 2..323 23..339 588 39 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11313-PA 317 GK11313-PA 14..306 32..330 502 39.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10532-PA 341 GE10532-PA 1..341 1..341 1454 78.3 Plus

LD18667.hyp Sequence

Translation from 130 to 1155

> LD18667.hyp
MYPAQPAKVALAGQPISAGKPPRHSPVQMKSIPLPVFELPEYVCVETKWV
TRKYAIENGIPVKELHAPITNGGATESPKKSVQQKRLNEVTGMFANEAMV
PRRERAIQTENAGTKDAGIQCRRDSEEWYLPEERPKDTGSEASNSDKFLT
YVSENTFIFPNGMMECAVCGDVAKTLLEHQSHMTAHYGPGALCFRCGQRL
DHQKQLKQHSLSCPALAPRKSSMLFKCPHLLCNAMSHSEMQLLRHLRNHS
GRKCYRCLQCKRYFKTTTSLLVHRKKEQSCAKAKVVVLFREHNGLPNGRG
DPRRCSVCLKRFSSERVCLRHRRQCILGHFRRLSRVLKKEL*

LD18667.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG33213-PA 341 CG33213-PA 1..341 1..341 1832 100 Plus