Clone LD18761 Report

Search the DGRC for LD18761

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:187
Well:61
Vector:pBS SK-
Associated Gene/TranscriptNup107-RA
Protein status:LD18761.pep: gold
Preliminary Size:2682
Sequenced Size:2699

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6743 2000-02-14 Blastp of sequenced clone
CG6743 2001-01-01 Release 2 assignment
CG6743 2003-01-01 Sim4 clustering to Release 3
Nup107 2008-04-29 Release 5.5 accounting
Nup107 2008-08-15 Release 5.9 accounting
Nup107 2008-12-18 5.12 accounting

Clone Sequence Records

LD18761.complete Sequence

2699 bp (2699 high quality bases) assembled on 2000-02-14

GenBank Submission: AF160938

> LD18761.complete
TTTTTAGCGAATAGCGCGTGAATTTCTGTTTTGATTAAATTAATTGAATT
GATGTGCCGTAGCTGATAGCCAAGAAACGCATAGTGCAGCCATGGCCGAC
AGCCCGTTCCCGAGGAGCAGCCGCAGTGGCCTGCTACGCACGACGCTGAA
CAGCTCGATGCCGCCGCAAAATCTCTCCCACTCGCTGCTCATCCTCGAGA
AGAGCAACGCGGAGCAGAATGAGCTCTCGCTGATGGAGGACACCGGCGAT
GATCTGGATCGGGGCAAGAGCCGCATGGACGTGCTCTTCCCGCAGTTCTT
CGACGTGCTGCAGGCTCAGGGTAACGGGCAGGAGGCATTCGAGGTGATCC
AATCGCTGACGCAAGTCTGTCGCGGCGTGGTGGAGCAGCTGGAGCTGGAG
ATCGATCACGGCATGGGTGGGGAACAGGGCGCGCGGCAACGCGAGTCTAT
GCTCACCTGGCTGCGACAGGAGATAAACACGTGGCGCCTGCTGCACGCCC
TCTTCTACGACCGCATCCTGCTGCAGACGGACAGGCAGGCGGATGATGAG
ATGCAAGATGGCCCCACGCTCGGCGGCAGCGAGAAGGAGGTCATACAGCA
GTTGTACGCCCTCAATGCGACGCTGCGTGAGTACCAGCTGGTGGTGGACT
GGCTGGAGGCGTGCTACGACCGGGGGGAGCAACAAAACCCACTCCACGCC
CACGATCGTATGATGGCGTGGGAGAACACGCTCTTCCAACTGGAGAACCT
GCAGGGCGCCGCCTTTGGCAAGGGCCATAAGATCGTAACGCGTCTGGATC
CAGATGCTCCCGTACGCGAGAAACGACCGTTGCACGCCCTCGACGAGGAG
GACAACCTGCGCCTGTCCCGCGCCATTTTCGAATTGATACGAGCGGGACG
CGTCGACGATGGCCTCAAGTTGTGCAAGCACTTCGGACAGACGTGGCGGG
CGGCGATCCTTGAGGGCTGGCGTCTCCACGAGGATCCCAACTTCGAGCAG
AATGTCTCGGTGCTGCACGAAAAGCTGCCCATCGAGGGCAATCCCAGGAG
GGATATCTGGAAGCGCTGCGCGTGGATGCTGGCCGATTCCAAGAACTATG
ACGAGTACAGCCGCGCGACGGCGGGTGTCTTCTCCGGCCACTTGGGCTCG
CTGAAAACCCTTTTGCACAGCAACTGGCACGATTTGCTCTGGGCCCATCT
GAAGGTGCAGATCGACATCCGTGTGGAATCGGAGATACGCGGCTGCTGCC
TCAAAAACTACCAACCGATGCCCGATGATTACTGGAACGGCAGGATGACG
ATGGAGCAGATCTTCGAGGAACTGAACGTTGCCAAGGATGCGTCGGTGCG
GGATTTCGCCCAAAGTCAACTGGGCATTATCCAGCGTCATTTAATCCTGG
ATACTTGCGGCGAGCTGATCCAACACATGGTGCGCTGGGTGGAGAAGGAT
ACCTCCCAACAATCGCCCCATCAATTGCGCTTTATGGCCCACATAGTGCT
CTTCCTGCGTCAAATCGGCCGTGTGGAGCAGGAGCGACAGGCGGAGAAGA
TCGTAGCCGCATATGTGGAGGCATTGATTGCCAGGGGCGAACCGCAGCTA
ATAGCCTACTATACTGCATCGCTTTCGAATCCGCTGCAGGTTCAGCTCTA
CTCGCGGTTTCTGGAGCAAGTGGAGCAGAAGCGTCCGCGGGAGCTAGCTG
TGGATGCCGCCCTGCAGGCGGGCTTGGATGTGGAACAGATCACACGCGTC
ACCGTGCAGAATATTCGCCTCGCACATCAGCCACTCGGGGAATTCGGTGA
GCCGCAGTCCGGCGAGATCTCTGCAATCGATCAGCGCAAGATCTCAGCAT
TGGAGTGGCTAATCCATTTGCCGGAGCAGCGCGGTGAGTTGCTGTGGCAG
GCCAACGCCATGATACGCACCTATCTGGCCAGCAGCAAGGTGGAGTGCAT
GCGCCAGACCTTCCGCATGGTGCCGGCCGACATAGTGCAGCAACTAGTCA
GCTTGTACGGCTCGGTGGACAACATACCACCGCGTGAGGAGTGCTGCCTG
AAGGAGTATCTCTGCTACAAGGCGTATCTGTCTGGCGTCGACAGTTTCGT
CGAATGGAACCGCCTGCAGCAGAACAGGCCCAAGAAGCCACAGACTTCAC
ACGCAGCTTCCTCGCAGGACAACTTCACGGAGCGCATGGCGAGTGAGCGC
AAGGAGCAGGCTCACCGATCGGAAGTCGTGCGCTGGGAGCACAAGGTTAA
GGAGCAGGCCAAGCAAACCATCGAACTCCTGTACAATGTGCTCATGTTCC
CGGACAAGGGTTGGCTGGTGGATCCGTTCATCGCCAAGCTGCCCGAGAAC
GCCGTGCAGCTGAGCTGGGATCATCGCCTACTGCAGATGGAGAAATTGCG
CTCCATCTGCATTCCTGAGATCGCCCTGTTTCTGAACGAAGTGATGTTCA
AGTCGGGAGACTTTGCGGGTTGCGTGCGCCTGGCAGATGAAATATCCAGC
GAGAATCGGCAGTTGTACAAAGTCTATACGAAGCACAAGCTGGCAGAGCT
TCTGGCCAAGATCGCGGACGCCTCCCTGGAGCTGCTCAACTCGAAACTGG
ATCCATGGGGCTATCCTATAACAACTTAGCAATCCTAGTACATTTGTGTG
TTTTGCGATTACATTCTAACTTTAAACGTTAAAAAAAAAAAAAAAAAAA

LD18761.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Nup107-RA 2728 Nup107-RA 47..2726 1..2680 13400 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10732537..10734800 2264..1 11275 99.9 Minus
chr2L 23010047 chr2L 10732057..10732472 2680..2265 2050 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:06:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10733773..10736036 2264..1 11320 100 Minus
2L 23513712 2L 10733293..10733708 2680..2265 2080 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10733773..10736036 2264..1 11320 100 Minus
2L 23513712 2L 10733293..10733708 2680..2265 2080 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:22:04 has no hits.

LD18761.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:23:15 Download gff for LD18761.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10732057..10732472 2265..2680 99 <- Minus
chr2L 10732537..10734800 1..2264 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:53:20 Download gff for LD18761.complete
Subject Subject Range Query Range Percent Splice Strand
Nup107-RA 1..2538 92..2629 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:36:09 Download gff for LD18761.complete
Subject Subject Range Query Range Percent Splice Strand
Nup107-RA 1..2538 92..2629 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:45:09 Download gff for LD18761.complete
Subject Subject Range Query Range Percent Splice Strand
Nup107-RA 1..2538 92..2629 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:12:05 Download gff for LD18761.complete
Subject Subject Range Query Range Percent Splice Strand
Nup107-RA 1..2538 92..2629 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:50:40 Download gff for LD18761.complete
Subject Subject Range Query Range Percent Splice Strand
Nup107-RA 1..2538 92..2629 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:39:23 Download gff for LD18761.complete
Subject Subject Range Query Range Percent Splice Strand
Nup107-RA 18..2696 1..2679 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:36:09 Download gff for LD18761.complete
Subject Subject Range Query Range Percent Splice Strand
Nup107-RA 42..2721 1..2680 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:45:09 Download gff for LD18761.complete
Subject Subject Range Query Range Percent Splice Strand
Nup107-RA 36..2715 1..2680 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:12:05 Download gff for LD18761.complete
Subject Subject Range Query Range Percent Splice Strand
Nup107-RA 18..2696 1..2679 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:40 Download gff for LD18761.complete
Subject Subject Range Query Range Percent Splice Strand
Nup107-RA 36..2715 1..2680 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:23:15 Download gff for LD18761.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10733293..10733708 2265..2680 100 <- Minus
2L 10733773..10736036 1..2264 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:23:15 Download gff for LD18761.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10733293..10733708 2265..2680 100 <- Minus
2L 10733773..10736036 1..2264 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:23:15 Download gff for LD18761.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10733293..10733708 2265..2680 100 <- Minus
2L 10733773..10736036 1..2264 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:45:09 Download gff for LD18761.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10733293..10733708 2265..2680 100 <- Minus
arm_2L 10733773..10736036 1..2264 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:48:34 Download gff for LD18761.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10733293..10733708 2265..2680 100 <- Minus
2L 10733773..10736036 1..2264 100   Minus

LD18761.pep Sequence

Translation from 91 to 2628

> LD18761.pep
MADSPFPRSSRSGLLRTTLNSSMPPQNLSHSLLILEKSNAEQNELSLMED
TGDDLDRGKSRMDVLFPQFFDVLQAQGNGQEAFEVIQSLTQVCRGVVEQL
ELEIDHGMGGEQGARQRESMLTWLRQEINTWRLLHALFYDRILLQTDRQA
DDEMQDGPTLGGSEKEVIQQLYALNATLREYQLVVDWLEACYDRGEQQNP
LHAHDRMMAWENTLFQLENLQGAAFGKGHKIVTRLDPDAPVREKRPLHAL
DEEDNLRLSRAIFELIRAGRVDDGLKLCKHFGQTWRAAILEGWRLHEDPN
FEQNVSVLHEKLPIEGNPRRDIWKRCAWMLADSKNYDEYSRATAGVFSGH
LGSLKTLLHSNWHDLLWAHLKVQIDIRVESEIRGCCLKNYQPMPDDYWNG
RMTMEQIFEELNVAKDASVRDFAQSQLGIIQRHLILDTCGELIQHMVRWV
EKDTSQQSPHQLRFMAHIVLFLRQIGRVEQERQAEKIVAAYVEALIARGE
PQLIAYYTASLSNPLQVQLYSRFLEQVEQKRPRELAVDAALQAGLDVEQI
TRVTVQNIRLAHQPLGEFGEPQSGEISAIDQRKISALEWLIHLPEQRGEL
LWQANAMIRTYLASSKVECMRQTFRMVPADIVQQLVSLYGSVDNIPPREE
CCLKEYLCYKAYLSGVDSFVEWNRLQQNRPKKPQTSHAASSQDNFTERMA
SERKEQAHRSEVVRWEHKVKEQAKQTIELLYNVLMFPDKGWLVDPFIAKL
PENAVQLSWDHRLLQMEKLRSICIPEIALFLNEVMFKSGDFAGCVRLADE
ISSENRQLYKVYTKHKLAELLAKIADASLELLNSKLDPWGYPITT*

LD18761.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14071-PA 847 GF14071-PA 1..847 1..845 3585 77.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10363-PA 845 GG10363-PA 1..844 1..844 4175 91.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11309-PA 890 GH11309-PA 2..890 3..845 2963 62.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
Nup107-PA 845 CG6743-PA 1..845 1..845 4416 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17818-PA 878 GI17818-PA 2..878 3..845 3101 65.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26389-PA 839 GL26389-PA 1..839 1..845 3294 72.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19826-PA 839 GA19826-PA 1..839 1..845 3297 72.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11485-PA 845 GM11485-PA 1..845 1..845 4294 94.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Nup170-PA 845 GD22231-PA 1..845 1..845 4330 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17646-PA 879 GJ17646-PA 9..879 11..845 3142 67.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24746-PA 853 GK24746-PA 5..853 11..845 2907 64.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13395-PA 845 GE13395-PA 1..844 1..844 4176 91.6 Plus

LD18761.hyp Sequence

Translation from 91 to 2628

> LD18761.hyp
MADSPFPRSSRSGLLRTTLNSSMPPQNLSHSLLILEKSNAEQNELSLMED
TGDDLDRGKSRMDVLFPQFFDVLQAQGNGQEAFEVIQSLTQVCRGVVEQL
ELEIDHGMGGEQGARQRESMLTWLRQEINTWRLLHALFYDRILLQTDRQA
DDEMQDGPTLGGSEKEVIQQLYALNATLREYQLVVDWLEACYDRGEQQNP
LHAHDRMMAWENTLFQLENLQGAAFGKGHKIVTRLDPDAPVREKRPLHAL
DEEDNLRLSRAIFELIRAGRVDDGLKLCKHFGQTWRAAILEGWRLHEDPN
FEQNVSVLHEKLPIEGNPRRDIWKRCAWMLADSKNYDEYSRATAGVFSGH
LGSLKTLLHSNWHDLLWAHLKVQIDIRVESEIRGCCLKNYQPMPDDYWNG
RMTMEQIFEELNVAKDASVRDFAQSQLGIIQRHLILDTCGELIQHMVRWV
EKDTSQQSPHQLRFMAHIVLFLRQIGRVEQERQAEKIVAAYVEALIARGE
PQLIAYYTASLSNPLQVQLYSRFLEQVEQKRPRELAVDAALQAGLDVEQI
TRVTVQNIRLAHQPLGEFGEPQSGEISAIDQRKISALEWLIHLPEQRGEL
LWQANAMIRTYLASSKVECMRQTFRMVPADIVQQLVSLYGSVDNIPPREE
CCLKEYLCYKAYLSGVDSFVEWNRLQQNRPKKPQTSHAASSQDNFTERMA
SERKEQAHRSEVVRWEHKVKEQAKQTIELLYNVLMFPDKGWLVDPFIAKL
PENAVQLSWDHRLLQMEKLRSICIPEIALFLNEVMFKSGDFAGCVRLADE
ISSENRQLYKVYTKHKLAELLAKIADASLELLNSKLDPWGYPITT*

LD18761.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
Nup107-PA 845 CG6743-PA 1..845 1..845 4416 100 Plus