Clone LD18774 Report

Search the DGRC for LD18774

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:187
Well:74
Vector:pBS SK-
Associated Gene/TranscriptOstDelta-RA
Protein status:LD18774.pep: gold
Preliminary Size:2288
Sequenced Size:2224

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6370 2001-01-01 Release 2 assignment
CG6370 2001-11-29 Blastp of sequenced clone
CG6370 2008-04-29 Release 5.5 accounting
CG6370 2008-08-15 Release 5.9 accounting
CG6370 2008-12-18 5.12 accounting

Clone Sequence Records

LD18774.complete Sequence

2224 bp (2224 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069461

> LD18774.complete
TCACTCTTGCAGCGGGCATCGATGGTTCTTCGTTTACGCATCGATGTTTG
TTGATCCAGAAACATATCGATAGTTGTCTCGGCCGCTGACGTGTATAAAA
TATCGAGGGACAGGCGGTGATTTTTTGAGCGATTTAATTTTATTTTCCTA
TAGAATATAAGCGGCGTGTGAAAGCGCAACCACAATATAGGAAAATGTTA
AAGCTAGGTCTGGTCATCTTCTGCGTGTTGGTCGCTAGTGGGCCGACGTG
GAGCGCCCGCACCGTGGACAGTCACCTGGGGCAAAAGGATCTCAGCCGCC
TGCAAAAAGTTTTCGTGGACGGATTTGGTTCCAGTGACCTGCAGTCGATC
TTCTTCTCCAGCCTAAACATTCAACTGACTGATGCCACTCAGAAGGAGCC
GTTGTGCAAGAAGATTGCTACGCTGCATTCCGAATCCAAGCTGAACAGCT
TCGAAAAAGACTACTACTACATTGGTGCTAGCAGAAACCTGGGTTGCTCC
GCTAAGATTGACGAGGGTCTGCTTTCCAAGGTGTATAGTTCCCTGAACTC
GGAGCTCGGCAGCTCTCAGGAGATCTTCTACCGCGTGGTCACCCACAAAG
TGCTCGGCGTGGAGATCAATGAAGCCACTCAGGAAAAACTAGTGAAGCGT
TTGCAAGAACTGCTCAAGAAGGACGACACACTCAGCGGCCTGGGATACGC
TTTCAATGTTGCTCCACTTCTGGGTGCCAGTGCCTCCTTTATCGCAAATC
GCGTGGAGGATGCCATCGTGCAAGCAGATGAAGTTGACGGCAAGCTCTTG
CAATTCGAAGGCGGTCTCAGTATCACATCCCTGATCATCAATGGTGCTTT
CGGTGTGAGCAAGACCTTTAACAAGCCCGTGCCCATTACTGCTGACCAGG
CAGTTAAGTTTGCTAACTACTTCCTTAGCCGCCGATCCGTCCAAACCGCC
AAAGGAGCTCATGTGCTAATCGAGGCGCTGAAGACTATTAGTGGAGCCGA
TAAAATTGCTCCCGTTTGTGTGCAGCTCATTGGCAACGGTCAATTGGACG
CTCAGTCGCCGACTCTGAACGTAGCCGTTGTTGATCTGCTCGGCAAGCCT
TTGTCACCTGCCCCCAAAGTCATCAATGCAAAGGTTATTCGCAAGAAGGA
CAGCTCTGTTTTAGCTGATAAAATCACTGTGGCCTCGAAATCCTCGGACA
AAACCACCTATGTGGCTGATTTGGCCAGCTTAAAGCCAGCTCGCGGCGTT
TACCAGGCGGAGTTGAGTGCAGATGGTGTCTACACCCAGACACTGCAGTT
CAAGGTTCTTGGCCGCGTCAAGGTTCAATCTCTCGAGGTGGGCATTGCGG
AATCTGATGCTAGCGCTGCTACCCGCAAGCAGAGTGTGACCTATCCAGGA
AAACTGCAGGAGGTTCTCTCCGCTGACAGCACCCAGAAGCTTTTGCTGAA
GGCCGTTCTGGTAGATGAATCCACCAGCAAGCCTCTGGCTGTCCATCAGG
CATTCGTTCGACTCTACAACAAGAAAACTGACAAGGAGATCATCTTTGTG
GCCGAGCAGGATAGCAGCAAGGCGTACAAATTCGACATGGATGTTGGCAA
CAACGGAAAGAACTTTAACTACCAGAGCGGCACCTACAGCATTTACTTGA
CCGTGGGCGATTCCTCTTTGTCCAACTCCTTCGAGTGGTTAGTTGCTGAA
GTCCAATTGAAATTCAACGAGGATAAGGAAGTCAAGCCTAAGAACACTTC
TGGTCCCCTGCCCGAAATCATCCATCAGTTCCGAGTGCCCGATAAGCGCC
CGCCCCGCATTGTTTCTGATATCTTCACCGGACTGTGCATAACCCCGCTT
GTGCTGCTTTTCGTTTTTTGGGGAAAACTGGGCATCAATGTATCTAACCT
GACGCTGGCACCGAGTACGATCGGGTTTCATCTGGGTTTCGGTGGCATTC
TGGTGCTGTTCTTCGTGTTCTGGCTGCAGCTTAACATGTTCCAGACACTG
CGCCTGCTGATTCCCATCGCAGTATTCACATTCCTGGCTGGCAACCGATT
ACTGAGACGTCTTTACGCACAACGTAACTCGAAGGCAAGTGCGTCGTAAG
TGCGTTCATCATTGTACGAAGTCAATAAGTGAGCTACTCTCTATCTTGCA
ACACCATCAGAAAACAAACTTTAATAAAGCGATTTAGTTAAGCCCAAACA
CACACTAAAAAAAAAAAAAAAAAA

LD18774.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6370-RA 2374 CG6370-RA 134..2341 1..2209 11005 99.9 Plus
CG6370.a 2337 CG6370.a 134..2337 1..2208 10930 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13652248..13653529 1728..447 6410 100 Minus
chr2R 21145070 chr2R 13651711..13652189 2206..1728 2395 100 Minus
chr2R 21145070 chr2R 13653598..13653838 446..206 1205 100 Minus
chr2R 21145070 chr2R 13654003..13654210 209..1 995 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:06:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17765111..17766392 1728..447 6410 100 Minus
2R 25286936 2R 17764571..17765052 2209..1728 2410 100 Minus
2R 25286936 2R 17766461..17766701 446..206 1205 100 Minus
2R 25286936 2R 17766867..17767074 209..1 995 99.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17766310..17767591 1728..447 6410 100 Minus
2R 25260384 2R 17765770..17766251 2209..1728 2410 100 Minus
2R 25260384 2R 17767660..17767900 446..206 1205 100 Minus
2R 25260384 2R 17768066..17768273 209..1 1005 99.5 Minus
Blast to na_te.dros performed on 2019-03-16 08:30:45 has no hits.

LD18774.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:31:23 Download gff for LD18774.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13651711..13652188 1729..2206 100 <- Minus
chr2R 13652248..13653529 447..1728 100 <- Minus
chr2R 13653598..13653836 208..446 100 <- Minus
chr2R 13654005..13654210 1..207 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:53:22 Download gff for LD18774.complete
Subject Subject Range Query Range Percent Splice Strand
CG6370-RA 1..1905 195..2099 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:23:42 Download gff for LD18774.complete
Subject Subject Range Query Range Percent Splice Strand
CG6370-RA 1..1905 195..2099 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:52:16 Download gff for LD18774.complete
Subject Subject Range Query Range Percent Splice Strand
OstDelta-RA 1..1905 195..2099 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:50:22 Download gff for LD18774.complete
Subject Subject Range Query Range Percent Splice Strand
CG6370-RA 1..1905 195..2099 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:43:01 Download gff for LD18774.complete
Subject Subject Range Query Range Percent Splice Strand
OstDelta-RA 1..1905 195..2099 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:58:59 Download gff for LD18774.complete
Subject Subject Range Query Range Percent Splice Strand
CG6370-RA 134..2338 1..2206 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:23:42 Download gff for LD18774.complete
Subject Subject Range Query Range Percent Splice Strand
CG6370-RA 134..2338 1..2206 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:16 Download gff for LD18774.complete
Subject Subject Range Query Range Percent Splice Strand
OstDelta-RA 1..2201 5..2206 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:50:23 Download gff for LD18774.complete
Subject Subject Range Query Range Percent Splice Strand
CG6370-RA 134..2338 1..2206 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:43:01 Download gff for LD18774.complete
Subject Subject Range Query Range Percent Splice Strand
OstDelta-RA 1..2201 5..2206 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:31:23 Download gff for LD18774.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17764574..17765051 1729..2206 100 <- Minus
2R 17765111..17766392 447..1728 100 <- Minus
2R 17766461..17766699 208..446 100 <- Minus
2R 17766869..17767074 1..207 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:31:23 Download gff for LD18774.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17764574..17765051 1729..2206 100 <- Minus
2R 17765111..17766392 447..1728 100 <- Minus
2R 17766461..17766699 208..446 100 <- Minus
2R 17766869..17767074 1..207 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:31:23 Download gff for LD18774.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17764574..17765051 1729..2206 100 <- Minus
2R 17765111..17766392 447..1728 100 <- Minus
2R 17766461..17766699 208..446 100 <- Minus
2R 17766869..17767074 1..207 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:16 Download gff for LD18774.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13652079..13652556 1729..2206 100 <- Minus
arm_2R 13652616..13653897 447..1728 100 <- Minus
arm_2R 13653966..13654204 208..446 100 <- Minus
arm_2R 13654374..13654579 1..207 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:26:48 Download gff for LD18774.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17765773..17766250 1729..2206 100 <- Minus
2R 17766310..17767591 447..1728 100 <- Minus
2R 17767660..17767898 208..446 100 <- Minus
2R 17768068..17768273 1..207 99   Minus

LD18774.pep Sequence

Translation from 194 to 2098

> LD18774.pep
MLKLGLVIFCVLVASGPTWSARTVDSHLGQKDLSRLQKVFVDGFGSSDLQ
SIFFSSLNIQLTDATQKEPLCKKIATLHSESKLNSFEKDYYYIGASRNLG
CSAKIDEGLLSKVYSSLNSELGSSQEIFYRVVTHKVLGVEINEATQEKLV
KRLQELLKKDDTLSGLGYAFNVAPLLGASASFIANRVEDAIVQADEVDGK
LLQFEGGLSITSLIINGAFGVSKTFNKPVPITADQAVKFANYFLSRRSVQ
TAKGAHVLIEALKTISGADKIAPVCVQLIGNGQLDAQSPTLNVAVVDLLG
KPLSPAPKVINAKVIRKKDSSVLADKITVASKSSDKTTYVADLASLKPAR
GVYQAELSADGVYTQTLQFKVLGRVKVQSLEVGIAESDASAATRKQSVTY
PGKLQEVLSADSTQKLLLKAVLVDESTSKPLAVHQAFVRLYNKKTDKEII
FVAEQDSSKAYKFDMDVGNNGKNFNYQSGTYSIYLTVGDSSLSNSFEWLV
AEVQLKFNEDKEVKPKNTSGPLPEIIHQFRVPDKRPPRIVSDIFTGLCIT
PLVLLFVFWGKLGINVSNLTLAPSTIGFHLGFGGILVLFFVFWLQLNMFQ
TLRLLIPIAVFTFLAGNRLLRRLYAQRNSKASAS*

LD18774.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13225-PA 634 GF13225-PA 1..634 1..634 3043 89.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21020-PA 634 GG21020-PA 1..634 1..634 3228 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19852-PA 638 GH19852-PA 1..635 1..634 2644 78.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
OstDelta-PA 634 CG6370-PA 1..634 1..634 3162 100 Plus
OstDelta-PB 633 CG6370-PB 1..633 1..634 3145 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20443-PA 637 GI20443-PA 1..634 1..633 2719 79.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17276-PA 637 GL17276-PA 1..634 1..634 2853 84.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24160-PA 637 GA24160-PA 1..634 1..634 2859 84.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19951-PA 634 GM19951-PA 1..634 1..634 3295 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25442-PA 633 GD25442-PA 1..633 1..634 3272 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20114-PA 637 GJ20114-PA 1..634 1..633 2767 80.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23310-PA 648 GK23310-PA 1..635 1..629 2650 79.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13963-PA 634 GE13963-PA 1..634 1..634 3243 97 Plus

LD18774.hyp Sequence

Translation from 194 to 2098

> LD18774.hyp
MLKLGLVIFCVLVASGPTWSARTVDSHLGQKDLSRLQKVFVDGFGSSDLQ
SIFFSSLNIQLTDATQKEPLCKKIATLHSESKLNSFEKDYYYIGASRNLG
CSAKIDEGLLSKVYSSLNSELGSSQEIFYRVVTHKVLGVEINEATQEKLV
KRLQELLKKDDTLSGLGYAFNVAPLLGASASFIANRVEDAIVQADEVDGK
LLQFEGGLSITSLIINGAFGVSKTFNKPVPITADQAVKFANYFLSRRSVQ
TAKGAHVLIEALKTISGADKIAPVCVQLIGNGQLDAQSPTLNVAVVDLLG
KPLSPAPKVINAKVIRKKDSSVLADKITVASKSSDKTTYVADLASLKPAR
GVYQAELSADGVYTQTLQFKVLGRVKVQSLEVGIAESDASAATRKQSVTY
PGKLQEVLSADSTQKLLLKAVLVDESTSKPLAVHQAFVRLYNKKTDKEII
FVAEQDSSKAYKFDMDVGNNGKNFNYQSGTYSIYLTVGDSSLSNSFEWLV
AEVQLKFNEDKEVKPKNTSGPLPEIIHQFRVPDKRPPRIVSDIFTGLCIT
PLVLLFVFWGKLGINVSNLTLAPSTIGFHLGFGGILVLFFVFWLQLNMFQ
TLRLLIPIAVFTFLAGNRLLRRLYAQRNSKASAS*

LD18774.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
OstDelta-PA 634 CG6370-PA 1..634 1..634 3162 100 Plus
OstDelta-PB 633 CG6370-PB 1..633 1..634 3145 99.8 Plus