Clone LD18835 Report

Search the DGRC for LD18835

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:188
Well:35
Vector:pBS SK-
Associated Gene/TranscriptCG7080-RA
Protein status:LD18835.pep: gold
Preliminary Size:1353
Sequenced Size:1182

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7080 2001-01-01 Release 2 assignment
CG7080 2001-10-10 Blastp of sequenced clone
CG7080 2003-01-01 Sim4 clustering to Release 3
CG7080 2008-04-29 Release 5.5 accounting
CG7080 2008-08-15 Release 5.9 accounting
CG7080 2008-12-18 5.12 accounting

Clone Sequence Records

LD18835.complete Sequence

1182 bp (1182 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061253

> LD18835.complete
CCGGCGAAGAGTTCACAACGCGTCGAGTGTCCAACAAAAAAAGCGAGCAA
GATGCCCTCCATATGGCTGTTAGTCTCGACGCTGGCTTTGGTTAGCTGCC
AGGACTATCATTACCACCGTCCACAGACTCCTTTCGTTGCGGAATCTTAC
CATCAGCACCAGCAGCCTCAAGCCACCAAGTTTGTGGTGCAGACTTTGGG
TCGCACCTACGGTTTGGAAACCCAAAGGGCACCAGCCATCTATGAGGATT
ATCAGACGCATATTGTGCAGCTCTTCCAGCAGCGACAGGTGCCGCAGTAT
CATCAGGCTCCCCGCCAACAATTGCACACTTCTAGCTACCAGAATCCCCT
GCTGGTCAGCGCCAACTACCAGGCCGGCACCGTGTCCTTGGCGCCTCCAG
CTCCCGCTGCTCCTGCCCAGCCACTGACCAGCTATGGGCCACCTCACCTG
CAGCACCAGTCACAGCCTCTGCAACCTCCACCGCAGACTCCCCAATACTT
CCCCCAACAGCAGCAGCCACCTGCAAGCTATTTGCCACCTCAGCAGCCTG
CCCAGAAATTGTTCTTCGGCAATCCGTTTCCCTATGCCCCTGTGACGACC
GGCTCGGGGCAACAGGTGCTGGATGCAGGACATGGATCAGGTGTGGCGCC
CAATGAAGTGCAGGCTCAGCTTTTGCAAGCCACCGGAGCTGCGCCACCAC
AAACTCGAGTGGGTAACCAGGTGGCTCAGTCGCAGAGCTCCTCTTTGGAT
GCCTATGACTACAAGCAGAGCACTCCCGGAGAAAACCGAGAGTACCAAAG
GTTCGTCACCAGCTGCCCGGGAGGTGGAGCCTGCCAGCAGAAGGAGTTCA
ATCCAGGCGAGGTGGATGAGAGCCACCAGCGGGTTCTGCAGACAGTGCGA
GCCAGTACCCAACCTCGAGTGGAGGGCTGCTACAAGAGCCAGGTGATCTA
TGTGCCAGCGGGAGCTGCTGTCAATAGTCAGGGTCAGTTGCGACCAAAGA
ATCGACGCACTTTCGAGCGCAAGGAGCAGGTCCTCTCCAGATACCCCTAC
AACTAAATGTCCTCTCTAATCTTACTCACCGAATTTCACATCGAATTAGT
TGATATGCTTAGTTGTCAGTTTGTTGTTTGTTGTAAATAAATCGATCATT
GTTTAAATTTTAAAAAAAAAAAAAAAAAAAAA

LD18835.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7080.b 1424 CG7080.b 17..1180 1..1164 5820 100 Plus
CG7080-RA 1464 CG7080-RA 57..1220 1..1164 5820 100 Plus
CG7080.a 1170 CG7080.a 85..1167 82..1164 5415 100 Plus
CG7080.a 1170 CG7080.a 17..84 1..68 340 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18153059..18154143 81..1161 5270 99.3 Plus
chr3R 27901430 chr3R 18152909..18152994 1..85 365 97.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:06:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22329466..22330549 81..1164 5420 100 Plus
3R 32079331 3R 22329317..22329401 1..85 410 98.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22070297..22071380 81..1164 5420 100 Plus
3R 31820162 3R 22070148..22070232 1..85 410 98.8 Plus
Blast to na_te.dros performed 2019-03-16 06:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2260..2461 358..557 130 57 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2727..2835 416..520 130 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6911 398..547 130 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..6851 445..547 115 61.5 Plus

LD18835.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:49:38 Download gff for LD18835.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18152909..18152990 1..81 98 -> Plus
chr3R 18153060..18154143 82..1161 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:53:24 Download gff for LD18835.complete
Subject Subject Range Query Range Percent Splice Strand
CG7080-RA 1..1005 52..1056 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:49:18 Download gff for LD18835.complete
Subject Subject Range Query Range Percent Splice Strand
CG7080-RA 1..1005 52..1056 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:39:29 Download gff for LD18835.complete
Subject Subject Range Query Range Percent Splice Strand
CG7080-RA 1..1005 52..1056 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:18:05 Download gff for LD18835.complete
Subject Subject Range Query Range Percent Splice Strand
CG7080-RA 1..1005 52..1056 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:23:55 Download gff for LD18835.complete
Subject Subject Range Query Range Percent Splice Strand
CG7080-RA 1..1005 52..1056 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:33:30 Download gff for LD18835.complete
Subject Subject Range Query Range Percent Splice Strand
CG7080-RA 1..1161 1..1161 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:49:18 Download gff for LD18835.complete
Subject Subject Range Query Range Percent Splice Strand
CG7080-RA 17..1177 1..1161 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:39:29 Download gff for LD18835.complete
Subject Subject Range Query Range Percent Splice Strand
CG7080-RA 17..1177 1..1161 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:18:05 Download gff for LD18835.complete
Subject Subject Range Query Range Percent Splice Strand
CG7080-RA 1..1161 1..1161 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:23:55 Download gff for LD18835.complete
Subject Subject Range Query Range Percent Splice Strand
CG7080-RA 18..1178 1..1161 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:49:38 Download gff for LD18835.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22329317..22329397 1..81 100 -> Plus
3R 22329467..22330546 82..1161 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:49:38 Download gff for LD18835.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22329317..22329397 1..81 100 -> Plus
3R 22329467..22330546 82..1161 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:49:38 Download gff for LD18835.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22329317..22329397 1..81 100 -> Plus
3R 22329467..22330546 82..1161 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:39:29 Download gff for LD18835.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18155039..18155119 1..81 100 -> Plus
arm_3R 18155189..18156268 82..1161 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:55:01 Download gff for LD18835.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22070298..22071377 82..1161 100   Plus
3R 22070148..22070228 1..81 100 -> Plus

LD18835.hyp Sequence

Translation from 0 to 1055

> LD18835.hyp
PAKSSQRVECPTKKASKMPSIWLLVSTLALVSCQDYHYHRPQTPFVAESY
HQHQQPQATKFVVQTLGRTYGLETQRAPAIYEDYQTHIVQLFQQRQVPQY
HQAPRQQLHTSSYQNPLLVSANYQAGTVSLAPPAPAAPAQPLTSYGPPHL
QHQSQPLQPPPQTPQYFPQQQQPPASYLPPQQPAQKLFFGNPFPYAPVTT
GSGQQVLDAGHGSGVAPNEVQAQLLQATGAAPPQTRVGNQVAQSQSSSLD
AYDYKQSTPGENREYQRFVTSCPGGGACQQKEFNPGEVDESHQRVLQTVR
ASTQPRVEGCYKSQVIYVPAGAAVNSQGQLRPKNRRTFERKEQVLSRYPY
N*

LD18835.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7080-PA 334 CG7080-PA 1..334 18..351 1785 100 Plus

LD18835.pep Sequence

Translation from 51 to 1055

> LD18835.pep
MPSIWLLVSTLALVSCQDYHYHRPQTPFVAESYHQHQQPQATKFVVQTLG
RTYGLETQRAPAIYEDYQTHIVQLFQQRQVPQYHQAPRQQLHTSSYQNPL
LVSANYQAGTVSLAPPAPAAPAQPLTSYGPPHLQHQSQPLQPPPQTPQYF
PQQQQPPASYLPPQQPAQKLFFGNPFPYAPVTTGSGQQVLDAGHGSGVAP
NEVQAQLLQATGAAPPQTRVGNQVAQSQSSSLDAYDYKQSTPGENREYQR
FVTSCPGGGACQQKEFNPGEVDESHQRVLQTVRASTQPRVEGCYKSQVIY
VPAGAAVNSQGQLRPKNRRTFERKEQVLSRYPYN*

LD18835.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18076-PA 361 GF18076-PA 1..361 1..334 848 59.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11117-PA 330 GG11117-PA 1..330 1..334 1173 77 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21108-PA 346 GH21108-PA 1..346 4..334 441 41.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7080-PA 334 CG7080-PA 1..334 1..334 1785 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10472-PA 334 GI10472-PA 1..334 1..334 372 38.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23212-PA 387 GL23212-PA 18..387 14..334 646 45.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20086-PA 386 GA20086-PA 18..386 14..334 644 45.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26412-PA 334 GM26412-PA 1..334 1..334 1516 94.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20932-PA 334 GD20932-PA 1..334 1..334 1520 95.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23154-PA 337 GJ23154-PA 17..337 17..334 520 45.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14249-PA 379 GK14249-PA 142..379 92..334 569 54.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10280-PA 346 GE10280-PA 1..346 1..334 1325 87.9 Plus