Clone LD18882 Report

Search the DGRC for LD18882

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:188
Well:82
Vector:pBS SK-
Associated Gene/TranscriptRbm13-RA
Protein status:LD18882.pep: gold
Preliminary Size:1469
Sequenced Size:1266

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10648 2001-11-29 Blastp of sequenced clone
CG10648 2003-01-01 Sim4 clustering to Release 3
Rbm13 2008-04-29 Release 5.5 accounting
Rbm13 2008-08-15 Release 5.9 accounting
Rbm13 2008-12-18 5.12 accounting

Clone Sequence Records

LD18882.complete Sequence

1266 bp (1266 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069462

> LD18882.complete
TTGAATTTGCACGTGTTTCAAAGTAAGTTGGTTGTTTTTTATCATTGAAG
GCATTTCGTTAATAACAAAACGGCGCCATGCAGCACGACGATGTGGTCTG
GAGCATCATCAACAAGTCCTTCTGTTCGCACAAAGTGAAAACCGACACAC
GCACCTTCTGCCGCCATGAGTACAATCTCACGGGTCTGTGCACACGCAGA
ACGTGTCCGCTGGCCAATTCACAATATGCCACCGTTCGCGAGGAGAAGGG
CATCATCTATTTGTTCATCAAGACGGCGGAGAGAGCGCATATGCCGAGCA
AATTGTGGGAGAGGATCAAGTTGTCCAGAAACTTCGAGAAGGCCATCGAA
CAGATCAACGAGAATTTGGTTTTCTGGCCCAAATACATGATCGCCAAGAA
TAAGCAGCGTTTCCTCAAGATCACCCAATATCTGATACGAATGCGTCGTC
TGAAGTTGCGCCGCCAGAAGCTCATTGTGCCGCTATCGACGAAGATCGAA
CGGCGGGAGGCGCGGCGCGAGGAGAAGGCCTTGGTGGCCGCCAAGATCGA
CAATCACATCGAGAAGGCGCTGATGGATCGTCTGAAGAATGGCACCTATC
GCGACATCTACAACTTTTCGCAGACCGCTTTCAACAAGGCTCTGGAGGCG
GAACGCGTGGACGAGGATGATGAGGAGGAGCTAGACGACGAAGACGAGAA
TGAGGAGCAGCTGGAGCGCGAAATGGAGGTGGACGGCGACGATTCACGCG
AAGCTGAGGAAGTACAGAGATCCCTGCTCGACGAGGAGTTCGTCGAGGCA
GATACGGACGATGAGGAGGAGGATGATGATGATGATGATGATGATGACGA
GGACGACTACGACAGCGATTCCGGCAAGCGGGAAGAGGTCGAGGTGGGCA
GCGATTTCGAGGAGTCCGACGAGGATGACGATGCGGATGCAGATGATATT
GAGGAGACCAAAGTGCCAGCCAAGAAAACCGCCAGCAAAGCGAAGAAGGA
CAAGAAATCGCCGGCGGGCAACAGTCGACGCAGCCGCTCGAAGCCCAAAC
TGCAGCTGGAGTACGAGTATGAGGTGGAGAAGGAGGCACAGCGGCAGATG
CGCCATTAGCCAGGTCCACAATATATATTTCTCCCCCCCCCCCATGCTCA
ATCCACTTAGCTGTTAACGCTTATTGTTTAGCCGGTTAAGAATAGTATTT
TACATAAAAAAGAAAGAGAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAA
AAAAAAAAAAAAAAAA

LD18882.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
Rbm13-RA 1649 Rbm13-RA 53..1282 1..1230 6120 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8793658..8794472 140..954 4060 99.9 Plus
chrX 22417052 chrX 8794860..8795133 952..1230 1255 97.5 Plus
chrX 22417052 chrX 8793387..8793481 1..95 460 98.9 Plus
chrX 22417052 chrX 8793546..8793592 93..139 220 97.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:06:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8901998..8902812 140..954 4075 100 Plus
X 23542271 X 8903200..8903478 952..1230 1365 99.3 Plus
X 23542271 X 8901721..8901815 1..95 475 100 Plus
X 23542271 X 8901880..8901926 93..139 235 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8910096..8910910 140..954 4075 100 Plus
X 23527363 X 8911298..8911576 952..1230 1365 99.2 Plus
X 23527363 X 8909819..8909913 1..95 475 100 Plus
X 23527363 X 8909978..8910024 93..139 235 100 Plus
Blast to na_te.dros performed 2019-03-15 18:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
frogger 2483 frogger FROGGER 2483bp 1932..1971 878..839 110 75 Minus

LD18882.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:00:07 Download gff for LD18882.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8793387..8793478 1..92 98 -> Plus
chrX 8793546..8793592 93..139 97 -> Plus
chrX 8793658..8794471 140..953 99 -> Plus
chrX 8794862..8795108 954..1205 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:53:25 Download gff for LD18882.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 1..1032 78..1109 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:23:43 Download gff for LD18882.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 1..1032 78..1109 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:38:39 Download gff for LD18882.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 1..1032 78..1109 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:50:24 Download gff for LD18882.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 1..1032 78..1109 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:09 Download gff for LD18882.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 1..1032 78..1109 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:59:01 Download gff for LD18882.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 33..1237 1..1205 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:23:43 Download gff for LD18882.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 33..1237 1..1205 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:38:39 Download gff for LD18882.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 31..1235 1..1205 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:50:24 Download gff for LD18882.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RA 33..1237 1..1205 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:09 Download gff for LD18882.complete
Subject Subject Range Query Range Percent Splice Strand
Rbm13-RB 23..1227 1..1205 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:00:07 Download gff for LD18882.complete
Subject Subject Range Query Range Percent Splice Strand
X 8901721..8901812 1..92 100 -> Plus
X 8901880..8901926 93..139 100 -> Plus
X 8901998..8902811 140..953 100 -> Plus
X 8903202..8903453 954..1205 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:00:07 Download gff for LD18882.complete
Subject Subject Range Query Range Percent Splice Strand
X 8901721..8901812 1..92 100 -> Plus
X 8901880..8901926 93..139 100 -> Plus
X 8901998..8902811 140..953 100 -> Plus
X 8903202..8903453 954..1205 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:00:07 Download gff for LD18882.complete
Subject Subject Range Query Range Percent Splice Strand
X 8901721..8901812 1..92 100 -> Plus
X 8901880..8901926 93..139 100 -> Plus
X 8901998..8902811 140..953 100 -> Plus
X 8903202..8903453 954..1205 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:38:39 Download gff for LD18882.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8795754..8795845 1..92 100 -> Plus
arm_X 8795913..8795959 93..139 100 -> Plus
arm_X 8796031..8796844 140..953 100 -> Plus
arm_X 8797235..8797486 954..1205 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:26:49 Download gff for LD18882.complete
Subject Subject Range Query Range Percent Splice Strand
X 8910096..8910909 140..953 100 -> Plus
X 8911300..8911551 954..1205 100   Plus
X 8909819..8909910 1..92 100 -> Plus
X 8909978..8910024 93..139 100 -> Plus

LD18882.pep Sequence

Translation from 77 to 1108

> LD18882.pep
MQHDDVVWSIINKSFCSHKVKTDTRTFCRHEYNLTGLCTRRTCPLANSQY
ATVREEKGIIYLFIKTAERAHMPSKLWERIKLSRNFEKAIEQINENLVFW
PKYMIAKNKQRFLKITQYLIRMRRLKLRRQKLIVPLSTKIERREARREEK
ALVAAKIDNHIEKALMDRLKNGTYRDIYNFSQTAFNKALEAERVDEDDEE
ELDDEDENEEQLEREMEVDGDDSREAEEVQRSLLDEEFVEADTDDEEEDD
DDDDDDDEDDYDSDSGKREEVEVGSDFEESDEDDDADADDIEETKVPAKK
TASKAKKDKKSPAGNSRRSRSKPKLQLEYEYEVEKEAQRQMRH*

LD18882.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19180-PA 338 GF19180-PA 1..338 1..343 1113 80.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18274-PA 339 GG18274-PA 1..339 1..343 1071 90.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12638-PA 351 GH12638-PA 1..343 1..337 1027 70.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Rbm13-PB 343 CG10648-PB 1..343 1..343 1775 100 Plus
Rbm13-PA 343 CG10648-PA 1..343 1..343 1775 100 Plus
l(2)01289-PG 1191 CG9432-PG 861..978 195..311 188 33.9 Plus
l(2)01289-PM 1193 CG9432-PM 861..978 195..311 188 33.9 Plus
l(2)01289-PG 1191 CG9432-PG 695..887 133..310 187 29.5 Plus
l(2)01289-PM 1193 CG9432-PM 695..887 133..310 187 29.5 Plus
l(2)01289-PG 1191 CG9432-PG 843..937 195..290 177 36.1 Plus
l(2)01289-PM 1193 CG9432-PM 843..937 195..290 177 36.1 Plus
l(2)01289-PG 1191 CG9432-PG 802..914 195..295 171 37.2 Plus
l(2)01289-PM 1193 CG9432-PM 802..914 195..295 171 37.2 Plus
Asph-PA 785 CG8421-PA 181..385 158..342 165 26.3 Plus
Asph-PH 803 CG8421-PH 199..403 158..342 165 26.3 Plus
CG8545-PA 891 CG8545-PA 40..255 102..313 164 28.4 Plus
Asph-PB 382 CG8421-PB 181..377 158..342 162 26.8 Plus
Asph-PJ 400 CG8421-PJ 199..395 158..342 162 26.8 Plus
CG12017-PB 522 CG12017-PB 88..284 125..313 161 28.6 Plus
CG12017-PD 584 CG12017-PD 88..284 125..313 161 28.6 Plus
CG12017-PC 589 CG12017-PC 88..284 125..313 161 28.6 Plus
CG12017-PA 594 CG12017-PA 88..284 125..313 161 28.6 Plus
l(2)01289-PG 1191 CG9432-PG 822..977 192..342 159 23.7 Plus
l(2)01289-PM 1193 CG9432-PM 822..977 192..342 159 23.7 Plus
CG8108-PA 919 CG8108-PA 235..459 107..343 159 25.4 Plus
CG8108-PB 919 CG8108-PB 235..459 107..343 159 25.4 Plus
l(2)01289-PG 1191 CG9432-PG 791..899 190..293 158 31.2 Plus
l(2)01289-PM 1193 CG9432-PM 791..899 190..293 158 31.2 Plus
CG8184-PE 5116 CG8184-PE 2732..2852 190..308 158 36 Plus
CG13096-PB 681 CG13096-PB 523..681 103..292 155 27.5 Plus
CG13096-PA 681 CG13096-PA 523..681 103..292 155 27.5 Plus
l(2)01289-PG 1191 CG9432-PG 879..975 186..287 154 34.3 Plus
l(2)01289-PM 1193 CG9432-PM 879..975 186..287 154 34.3 Plus
Asph-PK 556 CG8421-PK 119..250 195..309 153 29.5 Plus
Asph-PG 557 CG8421-PG 181..341 158..311 153 27.3 Plus
Asph-PI 575 CG8421-PI 199..359 158..311 153 27.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15034-PA 357 GI15034-PA 1..356 1..343 979 72.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12962-PA 334 GL12962-PA 1..284 1..297 1011 78.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10466-PA 334 GA10466-PA 1..314 1..324 1008 73.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13703-PA 340 GM13703-PA 1..340 1..343 1218 92.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24771-PA 293 GD24771-PA 7..293 56..343 869 88.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15389-PA 348 GJ15389-PA 1..347 1..343 1070 74.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16154-PA 341 GK16154-PA 1..322 1..325 1159 73.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15807-PA 337 GE15807-PA 1..337 1..343 1107 87.8 Plus

LD18882.hyp Sequence

Translation from 77 to 1108

> LD18882.hyp
MQHDDVVWSIINKSFCSHKVKTDTRTFCRHEYNLTGLCTRRTCPLANSQY
ATVREEKGIIYLFIKTAERAHMPSKLWERIKLSRNFEKAIEQINENLVFW
PKYMIAKNKQRFLKITQYLIRMRRLKLRRQKLIVPLSTKIERREARREEK
ALVAAKIDNHIEKALMDRLKNGTYRDIYNFSQTAFNKALEAERVDEDDEE
ELDDEDENEEQLEREMEVDGDDSREAEEVQRSLLDEEFVEADTDDEEEDD
DDDDDDDEDDYDSDSGKREEVEVGSDFEESDEDDDADADDIEETKVPAKK
TASKAKKDKKSPAGNSRRSRSKPKLQLEYEYEVEKEAQRQMRH*

LD18882.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
Rbm13-PB 343 CG10648-PB 1..343 1..343 1775 100 Plus
Rbm13-PA 343 CG10648-PA 1..343 1..343 1775 100 Plus
l(2)01289-PG 1191 CG9432-PG 861..978 195..311 188 33.9 Plus
l(2)01289-PM 1193 CG9432-PM 861..978 195..311 188 33.9 Plus
l(2)01289-PG 1191 CG9432-PG 695..887 133..310 187 29.5 Plus
l(2)01289-PM 1193 CG9432-PM 695..887 133..310 187 29.5 Plus
l(2)01289-PG 1191 CG9432-PG 843..937 195..290 177 36.1 Plus
l(2)01289-PM 1193 CG9432-PM 843..937 195..290 177 36.1 Plus
l(2)01289-PG 1191 CG9432-PG 802..914 195..295 171 37.2 Plus
l(2)01289-PM 1193 CG9432-PM 802..914 195..295 171 37.2 Plus
Asph-PA 785 CG8421-PA 181..385 158..342 165 26.3 Plus
l(2)01289-PG 1191 CG9432-PG 822..977 192..342 159 23.7 Plus
l(2)01289-PM 1193 CG9432-PM 822..977 192..342 159 23.7 Plus
l(2)01289-PG 1191 CG9432-PG 791..899 190..293 158 31.2 Plus
l(2)01289-PM 1193 CG9432-PM 791..899 190..293 158 31.2 Plus
l(2)01289-PG 1191 CG9432-PG 879..975 186..287 154 34.3 Plus
l(2)01289-PM 1193 CG9432-PM 879..975 186..287 154 34.3 Plus