BDGP Sequence Production Resources |
Search the DGRC for LD18882
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 188 |
Well: | 82 |
Vector: | pBS SK- |
Associated Gene/Transcript | Rbm13-RA |
Protein status: | LD18882.pep: gold |
Preliminary Size: | 1469 |
Sequenced Size: | 1266 |
Gene | Date | Evidence |
---|---|---|
CG10648 | 2001-11-29 | Blastp of sequenced clone |
CG10648 | 2003-01-01 | Sim4 clustering to Release 3 |
Rbm13 | 2008-04-29 | Release 5.5 accounting |
Rbm13 | 2008-08-15 | Release 5.9 accounting |
Rbm13 | 2008-12-18 | 5.12 accounting |
1266 bp (1266 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069462
> LD18882.complete TTGAATTTGCACGTGTTTCAAAGTAAGTTGGTTGTTTTTTATCATTGAAG GCATTTCGTTAATAACAAAACGGCGCCATGCAGCACGACGATGTGGTCTG GAGCATCATCAACAAGTCCTTCTGTTCGCACAAAGTGAAAACCGACACAC GCACCTTCTGCCGCCATGAGTACAATCTCACGGGTCTGTGCACACGCAGA ACGTGTCCGCTGGCCAATTCACAATATGCCACCGTTCGCGAGGAGAAGGG CATCATCTATTTGTTCATCAAGACGGCGGAGAGAGCGCATATGCCGAGCA AATTGTGGGAGAGGATCAAGTTGTCCAGAAACTTCGAGAAGGCCATCGAA CAGATCAACGAGAATTTGGTTTTCTGGCCCAAATACATGATCGCCAAGAA TAAGCAGCGTTTCCTCAAGATCACCCAATATCTGATACGAATGCGTCGTC TGAAGTTGCGCCGCCAGAAGCTCATTGTGCCGCTATCGACGAAGATCGAA CGGCGGGAGGCGCGGCGCGAGGAGAAGGCCTTGGTGGCCGCCAAGATCGA CAATCACATCGAGAAGGCGCTGATGGATCGTCTGAAGAATGGCACCTATC GCGACATCTACAACTTTTCGCAGACCGCTTTCAACAAGGCTCTGGAGGCG GAACGCGTGGACGAGGATGATGAGGAGGAGCTAGACGACGAAGACGAGAA TGAGGAGCAGCTGGAGCGCGAAATGGAGGTGGACGGCGACGATTCACGCG AAGCTGAGGAAGTACAGAGATCCCTGCTCGACGAGGAGTTCGTCGAGGCA GATACGGACGATGAGGAGGAGGATGATGATGATGATGATGATGATGACGA GGACGACTACGACAGCGATTCCGGCAAGCGGGAAGAGGTCGAGGTGGGCA GCGATTTCGAGGAGTCCGACGAGGATGACGATGCGGATGCAGATGATATT GAGGAGACCAAAGTGCCAGCCAAGAAAACCGCCAGCAAAGCGAAGAAGGA CAAGAAATCGCCGGCGGGCAACAGTCGACGCAGCCGCTCGAAGCCCAAAC TGCAGCTGGAGTACGAGTATGAGGTGGAGAAGGAGGCACAGCGGCAGATG CGCCATTAGCCAGGTCCACAATATATATTTCTCCCCCCCCCCCATGCTCA ATCCACTTAGCTGTTAACGCTTATTGTTTAGCCGGTTAAGAATAGTATTT TACATAAAAAAGAAAGAGAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAA AAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rbm13-RA | 1649 | Rbm13-RA | 53..1282 | 1..1230 | 6120 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 8793658..8794472 | 140..954 | 4060 | 99.9 | Plus |
chrX | 22417052 | chrX | 8794860..8795133 | 952..1230 | 1255 | 97.5 | Plus |
chrX | 22417052 | chrX | 8793387..8793481 | 1..95 | 460 | 98.9 | Plus |
chrX | 22417052 | chrX | 8793546..8793592 | 93..139 | 220 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 8901998..8902812 | 140..954 | 4075 | 100 | Plus |
X | 23542271 | X | 8903200..8903478 | 952..1230 | 1365 | 99.3 | Plus |
X | 23542271 | X | 8901721..8901815 | 1..95 | 475 | 100 | Plus |
X | 23542271 | X | 8901880..8901926 | 93..139 | 235 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 8910096..8910910 | 140..954 | 4075 | 100 | Plus |
X | 23527363 | X | 8911298..8911576 | 952..1230 | 1365 | 99.2 | Plus |
X | 23527363 | X | 8909819..8909913 | 1..95 | 475 | 100 | Plus |
X | 23527363 | X | 8909978..8910024 | 93..139 | 235 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
frogger | 2483 | frogger FROGGER 2483bp | 1932..1971 | 878..839 | 110 | 75 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 8793387..8793478 | 1..92 | 98 | -> | Plus |
chrX | 8793546..8793592 | 93..139 | 97 | -> | Plus |
chrX | 8793658..8794471 | 140..953 | 99 | -> | Plus |
chrX | 8794862..8795108 | 954..1205 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbm13-RA | 1..1032 | 78..1109 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbm13-RA | 1..1032 | 78..1109 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbm13-RA | 1..1032 | 78..1109 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbm13-RA | 1..1032 | 78..1109 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbm13-RA | 1..1032 | 78..1109 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbm13-RA | 33..1237 | 1..1205 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbm13-RA | 33..1237 | 1..1205 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbm13-RA | 31..1235 | 1..1205 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbm13-RA | 33..1237 | 1..1205 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbm13-RB | 23..1227 | 1..1205 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8901721..8901812 | 1..92 | 100 | -> | Plus |
X | 8901880..8901926 | 93..139 | 100 | -> | Plus |
X | 8901998..8902811 | 140..953 | 100 | -> | Plus |
X | 8903202..8903453 | 954..1205 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8901721..8901812 | 1..92 | 100 | -> | Plus |
X | 8901880..8901926 | 93..139 | 100 | -> | Plus |
X | 8901998..8902811 | 140..953 | 100 | -> | Plus |
X | 8903202..8903453 | 954..1205 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8901721..8901812 | 1..92 | 100 | -> | Plus |
X | 8901880..8901926 | 93..139 | 100 | -> | Plus |
X | 8901998..8902811 | 140..953 | 100 | -> | Plus |
X | 8903202..8903453 | 954..1205 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 8795754..8795845 | 1..92 | 100 | -> | Plus |
arm_X | 8795913..8795959 | 93..139 | 100 | -> | Plus |
arm_X | 8796031..8796844 | 140..953 | 100 | -> | Plus |
arm_X | 8797235..8797486 | 954..1205 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8910096..8910909 | 140..953 | 100 | -> | Plus |
X | 8911300..8911551 | 954..1205 | 100 | Plus | |
X | 8909819..8909910 | 1..92 | 100 | -> | Plus |
X | 8909978..8910024 | 93..139 | 100 | -> | Plus |
Translation from 77 to 1108
> LD18882.pep MQHDDVVWSIINKSFCSHKVKTDTRTFCRHEYNLTGLCTRRTCPLANSQY ATVREEKGIIYLFIKTAERAHMPSKLWERIKLSRNFEKAIEQINENLVFW PKYMIAKNKQRFLKITQYLIRMRRLKLRRQKLIVPLSTKIERREARREEK ALVAAKIDNHIEKALMDRLKNGTYRDIYNFSQTAFNKALEAERVDEDDEE ELDDEDENEEQLEREMEVDGDDSREAEEVQRSLLDEEFVEADTDDEEEDD DDDDDDDEDDYDSDSGKREEVEVGSDFEESDEDDDADADDIEETKVPAKK TASKAKKDKKSPAGNSRRSRSKPKLQLEYEYEVEKEAQRQMRH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19180-PA | 338 | GF19180-PA | 1..338 | 1..343 | 1113 | 80.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18274-PA | 339 | GG18274-PA | 1..339 | 1..343 | 1071 | 90.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12638-PA | 351 | GH12638-PA | 1..343 | 1..337 | 1027 | 70.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rbm13-PB | 343 | CG10648-PB | 1..343 | 1..343 | 1775 | 100 | Plus |
Rbm13-PA | 343 | CG10648-PA | 1..343 | 1..343 | 1775 | 100 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 861..978 | 195..311 | 188 | 33.9 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 861..978 | 195..311 | 188 | 33.9 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 695..887 | 133..310 | 187 | 29.5 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 695..887 | 133..310 | 187 | 29.5 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 843..937 | 195..290 | 177 | 36.1 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 843..937 | 195..290 | 177 | 36.1 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 802..914 | 195..295 | 171 | 37.2 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 802..914 | 195..295 | 171 | 37.2 | Plus |
Asph-PA | 785 | CG8421-PA | 181..385 | 158..342 | 165 | 26.3 | Plus |
Asph-PH | 803 | CG8421-PH | 199..403 | 158..342 | 165 | 26.3 | Plus |
CG8545-PA | 891 | CG8545-PA | 40..255 | 102..313 | 164 | 28.4 | Plus |
Asph-PB | 382 | CG8421-PB | 181..377 | 158..342 | 162 | 26.8 | Plus |
Asph-PJ | 400 | CG8421-PJ | 199..395 | 158..342 | 162 | 26.8 | Plus |
CG12017-PB | 522 | CG12017-PB | 88..284 | 125..313 | 161 | 28.6 | Plus |
CG12017-PD | 584 | CG12017-PD | 88..284 | 125..313 | 161 | 28.6 | Plus |
CG12017-PC | 589 | CG12017-PC | 88..284 | 125..313 | 161 | 28.6 | Plus |
CG12017-PA | 594 | CG12017-PA | 88..284 | 125..313 | 161 | 28.6 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 822..977 | 192..342 | 159 | 23.7 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 822..977 | 192..342 | 159 | 23.7 | Plus |
CG8108-PA | 919 | CG8108-PA | 235..459 | 107..343 | 159 | 25.4 | Plus |
CG8108-PB | 919 | CG8108-PB | 235..459 | 107..343 | 159 | 25.4 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 791..899 | 190..293 | 158 | 31.2 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 791..899 | 190..293 | 158 | 31.2 | Plus |
CG8184-PE | 5116 | CG8184-PE | 2732..2852 | 190..308 | 158 | 36 | Plus |
CG13096-PB | 681 | CG13096-PB | 523..681 | 103..292 | 155 | 27.5 | Plus |
CG13096-PA | 681 | CG13096-PA | 523..681 | 103..292 | 155 | 27.5 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 879..975 | 186..287 | 154 | 34.3 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 879..975 | 186..287 | 154 | 34.3 | Plus |
Asph-PK | 556 | CG8421-PK | 119..250 | 195..309 | 153 | 29.5 | Plus |
Asph-PG | 557 | CG8421-PG | 181..341 | 158..311 | 153 | 27.3 | Plus |
Asph-PI | 575 | CG8421-PI | 199..359 | 158..311 | 153 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15034-PA | 357 | GI15034-PA | 1..356 | 1..343 | 979 | 72.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12962-PA | 334 | GL12962-PA | 1..284 | 1..297 | 1011 | 78.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10466-PA | 334 | GA10466-PA | 1..314 | 1..324 | 1008 | 73.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13703-PA | 340 | GM13703-PA | 1..340 | 1..343 | 1218 | 92.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24771-PA | 293 | GD24771-PA | 7..293 | 56..343 | 869 | 88.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15389-PA | 348 | GJ15389-PA | 1..347 | 1..343 | 1070 | 74.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16154-PA | 341 | GK16154-PA | 1..322 | 1..325 | 1159 | 73.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15807-PA | 337 | GE15807-PA | 1..337 | 1..343 | 1107 | 87.8 | Plus |
Translation from 77 to 1108
> LD18882.hyp MQHDDVVWSIINKSFCSHKVKTDTRTFCRHEYNLTGLCTRRTCPLANSQY ATVREEKGIIYLFIKTAERAHMPSKLWERIKLSRNFEKAIEQINENLVFW PKYMIAKNKQRFLKITQYLIRMRRLKLRRQKLIVPLSTKIERREARREEK ALVAAKIDNHIEKALMDRLKNGTYRDIYNFSQTAFNKALEAERVDEDDEE ELDDEDENEEQLEREMEVDGDDSREAEEVQRSLLDEEFVEADTDDEEEDD DDDDDDDEDDYDSDSGKREEVEVGSDFEESDEDDDADADDIEETKVPAKK TASKAKKDKKSPAGNSRRSRSKPKLQLEYEYEVEKEAQRQMRH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rbm13-PB | 343 | CG10648-PB | 1..343 | 1..343 | 1775 | 100 | Plus |
Rbm13-PA | 343 | CG10648-PA | 1..343 | 1..343 | 1775 | 100 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 861..978 | 195..311 | 188 | 33.9 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 861..978 | 195..311 | 188 | 33.9 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 695..887 | 133..310 | 187 | 29.5 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 695..887 | 133..310 | 187 | 29.5 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 843..937 | 195..290 | 177 | 36.1 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 843..937 | 195..290 | 177 | 36.1 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 802..914 | 195..295 | 171 | 37.2 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 802..914 | 195..295 | 171 | 37.2 | Plus |
Asph-PA | 785 | CG8421-PA | 181..385 | 158..342 | 165 | 26.3 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 822..977 | 192..342 | 159 | 23.7 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 822..977 | 192..342 | 159 | 23.7 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 791..899 | 190..293 | 158 | 31.2 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 791..899 | 190..293 | 158 | 31.2 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 879..975 | 186..287 | 154 | 34.3 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 879..975 | 186..287 | 154 | 34.3 | Plus |