BDGP Sequence Production Resources |
Search the DGRC for LD18931
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 189 |
Well: | 31 |
Vector: | pBS SK- |
Associated Gene/Transcript | Rpn6-RB |
Protein status: | LD18931.pep: gold |
Preliminary Size: | 2771 |
Sequenced Size: | 1816 |
Gene | Date | Evidence |
---|---|---|
CG10149 | 2000-02-14 | Blastp of sequenced clone |
CG10145 | 2001-01-01 | Release 2 assignment |
CG10149 | 2001-01-01 | Release 2 assignment |
CG12858 | 2001-01-01 | Release 2 assignment |
CG10149 | 2003-01-01 | Sim4 clustering to Release 3 |
Rpn6 | 2008-04-29 | Release 5.5 accounting |
Rpn6 | 2008-08-15 | Release 5.9 accounting |
Rpn6 | 2008-12-18 | 5.12 accounting |
1816 bp (1816 high quality bases) assembled on 2000-02-14
GenBank Submission: AF160939
> LD18931.complete CAACGACCGAAAGGTGAAAAAGTCAGCATTAAACACGTAAATACGCAATC AATACACACCGGAAACGATCGAACACAAAGAAAAAATTGTCGCATTGCTA GTAGCTGAGTTGAGACAAGCTTAGTTGATTGATTGATTAGTAAATTTTTG AGTTGAGCGCCCCCACATCTCATCTCGTCTCGTCCGAACACAAATTTCAA GTCGCAAGATGGCCGGAGCAACACTTTTCGAGCGTGCCCAGGCATTGTCC AGCGTGAATCGCGAGGAGCAGGATAGTTCGCTGCTGAACAAACTGGTCCG CGACCAGGAGGGCGCCGAGAACGATGAGGAGCGCATCCGAATCAAGGAGC AGGGCATTCTGCAGCAGGGCGAGCTCTACAAGCAGGAGGGCAAGGCCAAG GAGCTGGCCGATCTCATCAAGGTGACGCGTCCGTTCCTCAGCTCGATCAG CAAGGCCAAGGCGGCCAAGCTGGTGCGTTCGCTGGTGGACATGTTCCTGG ACATGGACGCGGGCACAGGCATTGAGGTTCAATTGTGTAAAGACTGCATT GAGTGGGCCAAACAGGAGAAGCGCACATTTCTTCGCCAATCGCTGGAAGC TCGTCTGATTGCCTTATATTTTGATACTGCTTTGTACACGGAGGCCTTGG CTCTGGGTGCCCAATTGCTGCGCGAGCTGAAAAAGCTGGATGACAAGAAT CTGCTGGTGGAAGTGCAGCTGCTGGAGAGCAAAACCTATCACGCACTGAG CAACCTGCCCAAGGCTAGGGCCGCCCTCACCTCAGCCCGCACCACGGCCA ATGCTATCTACTGTCCGCCAAAGGTGCAAGGCGCACTGGATCTTCAGTCC GGCATCCTACATGCGGCTGATGAGCGTGACTTTAAGACCGCATTCTCCTA TTTCTACGAGGCCTTTGAAGGATTCGACAGCGTGGACAGCGTCAAGGCCT TGACCTCGCTTAAATACATGTTGCTGTGCAAAATCATGTTGGGACAGTCC GATGATGTCAACCAGCTCGTCAGTGGAAAGCTGGCTATTACCTATTCGGG CCGCGATATAGATGCTATGAAATCAGTGGCTGAGGCTTCACACAAACGTT CCCTGGCCGACTTCCAGGCTGCCCTCAAGGAATACAAAAAGGAGCTCGCC GAGGATGTGATTGTGCAGGCGCATTTGGGCACGTTATACGACACCATGTT GGAGCAAAACTTGTGCCGCATCATTGAACCCTACTCTCGTGTGCAGGTCG CCCATGTTGCCGAGAGCATTCAGCTGCCCATGCCGCAGGTGGAAAAGAAG CTGTCCCAAATGATCCTGGACAAAAAGTTCAGCGGCATTCTGGATCAGGG TGAGGGAGTACTGATTGTTTTCGAAGAGACGCCCGTGGACAAGACCTATG AACGCGTGCTGGAAACCATACAAAGTATGGGTAAGGTGGTGGACACACTG TACCAGAAGGCTAAGAAGCTGTCGTAAGCGGTGTGCAGGAGACATTATTC AACTCAAACATGATATCAGCATACTTAGCAGACTTTTCATAGTTTCCTTT TGTATTTTCCAACAACTCCCAAGCATTGTTCAAGCCAAACATGTTTTATG TTTCTGCAAAAGCAAAATGAATTGGTGAAGATAGCAACAGGAGCAGCAAC AACCACAAAAAAATGTAAAACAAAATCCATTAAACTAACATAAGCAAAAT TATTAATCATTGAGTGGGATCGAATTGTTTACGCAAGTGCGGTATAATAA GCAAAATATTCAAATAACTACAAAATAAAATGATAAAAGAAAACCGTAAA AAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rpn6-RB | 1991 | Rpn6-RB | 119..1918 | 1..1800 | 9000 | 100 | Plus |
Rpn6-RA | 1729 | Rpn6-RA | 118..1717 | 201..1800 | 8000 | 100 | Plus |
Rpn6.a | 1680 | Rpn6.a | 70..1668 | 202..1800 | 7995 | 100 | Plus |
Rpn6.a | 1680 | Rpn6.a | 34..69 | 1..36 | 180 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 10637452..10638006 | 1797..1243 | 2775 | 100 | Minus |
chr2R | 21145070 | chr2R | 10639000..10639527 | 528..1 | 2625 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 10638430..10638939 | 1034..525 | 2550 | 100 | Minus |
chr2R | 21145070 | chr2R | 10638067..10638282 | 1248..1033 | 1080 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 14750163..14750720 | 1800..1243 | 2790 | 100 | Minus |
2R | 25286936 | 2R | 14751714..14752241 | 528..1 | 2640 | 100 | Minus |
2R | 25286936 | 2R | 14751144..14751653 | 1034..525 | 2550 | 100 | Minus |
2R | 25286936 | 2R | 14750781..14750996 | 1248..1033 | 1080 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 14751362..14751919 | 1800..1243 | 2790 | 100 | Minus |
2R | 25260384 | 2R | 14752913..14753440 | 528..1 | 2640 | 100 | Minus |
2R | 25260384 | 2R | 14752343..14752852 | 1034..525 | 2550 | 100 | Minus |
2R | 25260384 | 2R | 14751980..14752195 | 1248..1033 | 1080 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2375..2470 | 1603..1699 | 140 | 61.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1131..1290 | 1633..1790 | 128 | 59.4 | Plus |
mdg3 | 5519 | mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). | 4831..5117 | 1503..1795 | 119 | 54.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2685 | 1606..1689 | 118 | 62.9 | Plus |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 6509..6550 | 1753..1795 | 113 | 76.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 10637452..10638002 | 1247..1797 | 100 | <- | Minus |
chr2R | 10638069..10638281 | 1034..1246 | 100 | <- | Minus |
chr2R | 10638431..10638937 | 527..1033 | 100 | <- | Minus |
chr2R | 10639002..10639527 | 1..526 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn6-RA | 44..1320 | 201..1477 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn6-RA | 44..1320 | 201..1477 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn6-RA | 44..1320 | 201..1477 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn6-RA | 44..1320 | 201..1477 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn6-RA | 44..1320 | 201..1477 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn6-RB | 78..1874 | 1..1797 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn6-RB | 78..1874 | 1..1797 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn6-RB | 31..1827 | 1..1797 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn6-RB | 78..1874 | 1..1797 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn6-RB | 31..1827 | 1..1797 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14750166..14750716 | 1247..1797 | 100 | <- | Minus |
2R | 14750783..14750995 | 1034..1246 | 100 | <- | Minus |
2R | 14751145..14751651 | 527..1033 | 100 | <- | Minus |
2R | 14751716..14752241 | 1..526 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14750166..14750716 | 1247..1797 | 100 | <- | Minus |
2R | 14750783..14750995 | 1034..1246 | 100 | <- | Minus |
2R | 14751145..14751651 | 527..1033 | 100 | <- | Minus |
2R | 14751716..14752241 | 1..526 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14750166..14750716 | 1247..1797 | 100 | <- | Minus |
2R | 14750783..14750995 | 1034..1246 | 100 | <- | Minus |
2R | 14751145..14751651 | 527..1033 | 100 | <- | Minus |
2R | 14751716..14752241 | 1..526 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 10637671..10638221 | 1247..1797 | 100 | <- | Minus |
arm_2R | 10638288..10638500 | 1034..1246 | 100 | <- | Minus |
arm_2R | 10638650..10639156 | 527..1033 | 100 | <- | Minus |
arm_2R | 10639221..10639746 | 1..526 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14751365..14751915 | 1247..1797 | 100 | <- | Minus |
2R | 14751982..14752194 | 1034..1246 | 100 | <- | Minus |
2R | 14752344..14752850 | 527..1033 | 100 | <- | Minus |
2R | 14752915..14753440 | 1..526 | 100 | Minus |
Translation from 208 to 1476
> LD18931.hyp MAGATLFERAQALSSVNREEQDSSLLNKLVRDQEGAENDEERIRIKEQGI LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMD AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALG AQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTS LKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLA DFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHV AESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERV LETIQSMGKVVDTLYQKAKKLS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rpn6-PC | 422 | CG10149-PC | 1..422 | 1..422 | 2086 | 100 | Plus |
Rpn6-PB | 422 | CG10149-PB | 1..422 | 1..422 | 2086 | 100 | Plus |
Rpn6-PA | 439 | CG10149-PA | 18..439 | 1..422 | 2086 | 100 | Plus |
alien-PD | 444 | CG9556-PD | 41..410 | 15..385 | 233 | 22.3 | Plus |
alien-PE | 444 | CG9556-PE | 41..410 | 15..385 | 233 | 22.3 | Plus |
Translation from 208 to 1476
> LD18931.pep MAGATLFERAQALSSVNREEQDSSLLNKLVRDQEGAENDEERIRIKEQGI LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMD AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALG AQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTS LKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLA DFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHV AESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERV LETIQSMGKVVDTLYQKAKKLS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13517-PA | 422 | GF13517-PA | 1..422 | 1..422 | 2182 | 97.9 | Plus |
Dana\GF22104-PA | 444 | GF22104-PA | 102..410 | 78..385 | 212 | 22.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22404-PA | 439 | GG22404-PA | 18..439 | 1..422 | 2199 | 99.1 | Plus |
Dere\GG24040-PA | 444 | GG24040-PA | 102..410 | 78..385 | 212 | 22.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21149-PA | 421 | GH21149-PA | 1..421 | 1..422 | 2103 | 95.5 | Plus |
Dgri\GH25117-PA | 444 | GH25117-PA | 102..410 | 78..385 | 208 | 22.3 | Plus |
Dgri\GH22257-PA | 444 | GH22257-PA | 102..410 | 78..385 | 208 | 22.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rpn6-PC | 422 | CG10149-PC | 1..422 | 1..422 | 2086 | 100 | Plus |
Rpn6-PB | 422 | CG10149-PB | 1..422 | 1..422 | 2086 | 100 | Plus |
Rpn6-PA | 439 | CG10149-PA | 18..439 | 1..422 | 2086 | 100 | Plus |
alien-PD | 444 | CG9556-PD | 41..410 | 15..385 | 233 | 22.3 | Plus |
alien-PE | 444 | CG9556-PE | 41..410 | 15..385 | 233 | 22.3 | Plus |
alien-PB | 444 | CG9556-PB | 41..410 | 15..385 | 233 | 22.3 | Plus |
alien-PA | 444 | CG9556-PA | 41..410 | 15..385 | 233 | 22.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18748-PA | 421 | GI18748-PA | 1..421 | 1..422 | 2108 | 95.3 | Plus |
Dmoj\GI11968-PA | 444 | GI11968-PA | 102..410 | 78..385 | 205 | 22.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10628-PA | 421 | GL10628-PA | 1..421 | 1..422 | 2136 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24424-PA | 421 | GA24424-PA | 1..421 | 1..422 | 2136 | 96.7 | Plus |
Dpse\GA21877-PA | 444 | GA21877-PA | 102..410 | 78..385 | 209 | 22.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20190-PA | 439 | GM20190-PA | 18..439 | 1..422 | 2216 | 99.8 | Plus |
Dsec\GM12583-PA | 444 | GM12583-PA | 102..410 | 78..385 | 212 | 22.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25662-PA | 328 | GD25662-PA | 1..328 | 95..422 | 1733 | 99.7 | Plus |
Dsim\GD22368-PA | 444 | GD22368-PA | 102..410 | 78..385 | 212 | 22.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21772-PA | 421 | GJ21772-PA | 1..421 | 1..422 | 2105 | 95.5 | Plus |
Dvir\GJ14108-PA | 444 | GJ14108-PA | 102..410 | 78..385 | 207 | 22.3 | Plus |