Clone LD19025 Report

Search the DGRC for LD19025

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:190
Well:25
Vector:pBS SK-
Associated Gene/TranscriptCG17490-RA
Protein status:LD19025.pep: gold
Sequenced Size:1157

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17490 2004-03-31 Blastp of sequenced clone
CG17490 2008-04-29 Release 5.5 accounting
CG17490 2008-08-15 Release 5.9 accounting
CG17490 2008-12-18 5.12 accounting

Clone Sequence Records

LD19025.complete Sequence

1157 bp (1157 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012485

> LD19025.complete
AAGTTTCAAGATATGGTTTTAAAGCAATGGTTGGTCATGGATGATGCACT
TTTCCAAGCATGTGGGTTTTGTCTAGTTGCGGCATCTGATGACCAGTCGG
TGTTTATCACTTGGGACAAGTATTATTTGCTAAACATACGCTTTAAGATG
CCAGAGGACAGCTGCAGGATAAAAATGACTGCTGTGCGAATTCCTGTGCC
TAAAAGTGGAGGAGGCTATATTAGGAGTGTGCATGCTTTGAGGTACCGGT
AGAAAGTTGTGGAAATACATTCCGAGCAATTTTCAGTGGAAGAATAGTAC
CTGCGAAATACAGGTTGAACAATAAGCAATTTATGGAAAGGAAACCAAGT
ATACCAAAAATCAGGCAGGTCAGCAGTCTTGGAAGTCAATTCACTTTTCC
CAATATAGCGGATCTATTTTGCAATGCCGTCTCCATTCACAATGACTATT
GTAAATTGCATTTTATAAACGAAAAGTTGCAATTCCATTTAAATGGAATG
TTGGAAAGTAAAGATGCTTCAGCGATTTACTATTTTAAGCAACATATTAT
TCTAAACTCGGATCAACTGGAATCTGCATCCAAAAATTATGACATGACCT
TTCATACAATAATGAGCGACGTTGACCGATTTCGGTACCGACAATGTAAC
GACATCTTGGCCCCTGGAACAAATTTTTCCGTTTTAAAGTCAAAATATAA
TATCATTAGAAATGACATTCATTAAGAATTTTGCGTACATCGAAACTATT
CAATAACCTTTTACGCTCACTTTTCTTATTTATACCCTATAGTTAGATAA
ACTAAATCTAAATCTAATAAACTAAATCTAATCTAATCGTTCCAAGGCTT
GTACGTATGATATTTTAGACACCAGACCCATATCCAAAAGTTGTCATTGT
GTAATCCTCTTCTCTGCATTATTAAGAAAATTATTGAATTGTGTCTATCA
CAAGCGCAAAGATCATCCCATCAGAACTATGCTATGTGATTTTTGAAGTA
ATAGCGCAAACATTGTTGTTGTCTGGACTTTAGATGATAAATCAATCGCT
CAGCTACAAGATAAACATTTTGTACAAGAAAAATATAATGAGTATATATG
CTTAGTTATAAAACAAATAAAATATTCTTAAGATGTTAAAAAAAAAAAAA
AAAAAAA

LD19025.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490.a 1819 CG17490.a 222..1358 1..1137 5685 100 Plus
CG17490-RA 1518 CG17490-RA 222..1358 1..1137 5685 100 Plus
CG17490-RC 1381 CG17490-RC 112..486 242..616 1875 100 Plus
CG17490-RC 1381 CG17490-RC 84..114 1..31 155 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 22431618..22432141 614..1137 2620 100 Plus
chr2L 23010047 chr2L 22431188..22431565 237..614 1875 99.7 Plus
chr2L 23010047 chr2L 22429568..22429813 1..246 1230 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:06:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22540377..22540900 614..1137 2620 100 Plus
2L 23513712 2L 22539947..22540324 237..614 1875 99.7 Plus
2L 23513712 2L 22538327..22538572 1..246 1230 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22540377..22540900 614..1137 2620 100 Plus
2L 23513712 2L 22539947..22540324 237..614 1875 99.7 Plus
2L 23513712 2L 22538327..22538572 1..246 1230 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:58:37 has no hits.

LD19025.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:59:17 Download gff for LD19025.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 22429568..22429809 1..242 100 -> Plus
chr2L 22431194..22431565 243..614 100 -> Plus
chr2L 22431619..22432141 615..1137 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:53:33 Download gff for LD19025.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RB 37..278 1..242 100 -> Plus
CG17490-RB 1663..2145 243..725 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:38:24 Download gff for LD19025.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RE 16..257 1..242 100 -> Plus
CG17490-RE 1642..2124 243..725 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:52:33 Download gff for LD19025.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RE 16..257 1..242 100 -> Plus
CG17490-RE 1642..2124 243..725 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:22:10 Download gff for LD19025.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RB 37..278 1..242 100 -> Plus
CG17490-RB 1663..2145 243..725 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:27 Download gff for LD19025.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RE 16..257 1..242 100 -> Plus
CG17490-RE 1642..2124 243..725 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:46:24 Download gff for LD19025.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RA 1..1134 1..1134 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:38:23 Download gff for LD19025.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RA 1..1134 1..1134 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:52:33 Download gff for LD19025.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RA 98..1234 1..1137 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:22:11 Download gff for LD19025.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RA 1..1134 1..1134 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:27 Download gff for LD19025.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RA 98..1234 1..1137 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:59:17 Download gff for LD19025.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22538327..22538568 1..242 100 -> Plus
2L 22539953..22540324 243..614 100 -> Plus
2L 22540378..22540900 615..1137 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:59:17 Download gff for LD19025.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22538327..22538568 1..242 100 -> Plus
2L 22539953..22540324 243..614 100 -> Plus
2L 22540378..22540900 615..1137 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:59:17 Download gff for LD19025.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22538327..22538568 1..242 100 -> Plus
2L 22539953..22540324 243..614 100 -> Plus
2L 22540378..22540900 615..1137 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:52:33 Download gff for LD19025.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22431059..22431300 1..242 100 -> Plus
arm_2L 22432685..22433056 243..614 100 -> Plus
arm_2L 22433110..22433632 615..1137 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:59:37 Download gff for LD19025.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22539953..22540324 243..614 100 -> Plus
2L 22538327..22538568 1..242 100 -> Plus
2L 22540378..22540900 615..1137 100   Plus

LD19025.hyp Sequence

Translation from 332 to 724

> LD19025.hyp
MERKPSIPKIRQVSSLGSQFTFPNIADLFCNAVSIHNDYCKLHFINEKLQ
FHLNGMLESKDASAIYYFKQHIILNSDQLESASKNYDMTFHTIMSDVDRF
RYRQCNDILAPGTNFSVLKSKYNIIRNDIH*

LD19025.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-PF 130 CG17490-PF 1..130 1..130 686 100 Plus
CG17490-PA 130 CG17490-PA 1..130 1..130 686 100 Plus
CG17490-PG 707 CG17490-PG 578..707 1..130 686 100 Plus
CG17490-PE 707 CG17490-PE 578..707 1..130 686 100 Plus
CG17490-PD 103 CG17490-PD 1..94 1..94 494 100 Plus

LD19025.pep Sequence

Translation from 332 to 724

> LD19025.pep
MERKPSIPKIRQVSSLGSQFTFPNIADLFCNAVSIHNDYCKLHFINEKLQ
FHLNGMLESKDASAIYYFKQHIILNSDQLESASKNYDMTFHTIMSDVDRF
RYRQCNDILAPGTNFSVLKSKYNIIRNDIH*

LD19025.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-PG 707 CG17490-PG 578..707 1..130 686 100 Plus
CG17490-PE 707 CG17490-PE 578..707 1..130 686 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26731-PA 707 GM26731-PA 578..707 1..130 584 85.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17705-PA 707 GD17705-PA 578..707 1..130 583 85.4 Plus