Clone LD19061 Report

Search the DGRC for LD19061

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:190
Well:61
Vector:pBS SK-
Associated Gene/TranscriptCG11178-RB
Protein status:LD19061.pep: gold
Preliminary Size:2381
Sequenced Size:3021

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11178 2001-01-01 Release 2 assignment
CG11178 2001-10-10 Blastp of sequenced clone
CG11178 2003-01-01 Sim4 clustering to Release 3
CG11178 2008-04-29 Release 5.5 accounting
CG11178 2008-08-15 Release 5.9 accounting
CG11178 2008-12-18 5.12 accounting

Clone Sequence Records

LD19061.complete Sequence

3021 bp (3021 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061257

> LD19061.complete
CAAACAAGAAAATAGAATAAAAACAAAATCGCTTGGAAATCGTAAAGAAA
GAAAGTTAAATACGACAGATAGATAATTGCAACACAAAATAAGTGCGCCG
TGGTCCGAATAGAACAACAATTGCGTGGCGTGGTTACACGAGTGCGAGCG
AGAGGGCCGATGTGGTAGTGGCCAATCCAATTGGATATTCATTTTGCAGG
CAAAAAACGCATTTTTTGTGGACACCGCTTGCTCCTTGGTACAAGGATAA
CGACCAACGATGGCCAGCGAGCCGGAGAACAAGCCACCGATCCTGCACAT
CCTCGTGGTGGGCTTCCACCACAAGCTGGGCTGCCAGGTGGAGTTCTCGC
ATCCGCCGCTAATCTCGGGCTCCACGGGACGCAACGAATGCCCCTCCGGC
TGGAAGTACCTGCCCACTCTGGCTCTGCCCGACGGCTCGCATAACTTTGC
CGAGGACACGGTGTTCTTCAACCTGCCCAGTTTGTATGAGCCGGCTGAGA
GTATCTACGGCGTGTCCTGCTATCGCCAGATACGCGTGGAGAAGCTAAAG
ATCCGGACAGCGGACCTCACGCGCAGCACCGTTCAGAAGTCCGTTTGCAT
ATTGGCCCGCCTGCCCATCTACGGGTACATCGAGGTGAAGCTAGCCCTCA
TTGCCGATGCCTTTTTCGATCAGGGCGACTTCTCCGGCACGGAACTGCTG
GCCAAGGCCTATCAGCAGCTAAATGCCTGCCTCCAGGACGACGAGTCGCG
CCGCCCGTTGCGCCACTTTCACGTGGGGCTGTCGCTGCGCGAGATCGTAC
TCCACTGGCGCCACAAGACGCTAATGCTCTTCAAACTAATGCTGCTGCAG
CGACGAGTGGTGTGTTTCGGTTCGCCCGTACGCCAAATGTGTGTGCTGAT
CCTGGGCATGGCATCGCTGGTGCCGCGGCTGCTGGAGAAGGGCTTCCAGG
AGGTGGCCTGTGTGCGCACGTCGCGTCCCCTGTCGCCCATGCCGGATTTC
ACTGACTCCCTGCAGCGGGAGGCGCAGGCCGAAGCCGAAGCGGAACTGGA
GGCAGTGGCTTCCGTAGCAGCTGCCACCGATGAGCAGAAACTGACGCCCG
AGAGCGCCACAGCGGTGGAGGGCGAGGCCGAAGAGCTGGCCCTCGTCTCA
TCCGCAGCGTCGGCGGGCGAGGAGCAGGTCAGTGGCGATGACACGTCGAC
GCGTTCCACGCCCAACTCACAGTCGCAGGACTCATCGAACGGCAGGAACA
GCTCGCTGACCAGAGAGGCCAGCGTGGACACACTAGCGTCCAACCTCGCC
GCCTTGTGCGCTGTCAATCCGGATGAGTATCGGGCACCGGTCAGCATCTT
CGCCAGCGGCAACCTCTGCCTGCCGTATCTGTCGCTACCGTACATGGACC
TGCTCAGCGATCCCATGGTGCTCTCCTATGTCATCGGCACCTCCAACGTG
CTTTTCCAGCAGAAACGTCAGCTGGCTGACGTCCTGGTGGACATCGAGGC
GGCCAATCTGGATGCCCACGATCCGGAGCTCAGGCGTCAGCTGGTGCTGA
GCACCGAGGATCTGCGCTACATGGACTACATCATGAAGCATGTGCAATCG
CCAAAGGAGGATGCCGAGGGCAGCGAGTACTGGATACGGGAGCAGTTTCA
GGGCTATATTCTCGCACTCTTGCGAACTGCTGTGGCTCCAGATGCCACGC
CAAAGGACAACGATCATTTCAATGCGCACTTCATGGGCGCCTTCAAGCGC
ACCCAATGCTTTCAGGAATGGTACGACGTTAGGCCCGAACCCGAGTTCTT
TGAGGCCCTGCCCGCTGGTCATCCCTTCGCCGGCACCTTGTCCGTGGCGG
ACATGAAACTAAAACTAGCACAAACCATGCAAAATAGCGAGAGTGGGCGA
AAAATCAACCAGGCGGTAAACACGACGAGTCGTGCAGTGGGCGGTGCCAT
ATCCCAGGCCAAGGGCGCCTTCTCCAGCTGGTGGTCATCCATCACGACGG
CCCCGCCCAATGCAACAAATGCAGGGCCTGCGACCAGCAGCTCGAATGGG
CAGGAAGGGGATGTAAGCGAAGGAGCTGCAGCCCAAGAGATCTCAGTTAC
ATTCCAGAATCATAAGGACGTCGAAGACCTTGACGTGGCGGGAGTCAGCA
TCCACCTGGCTGGCCAGGAAGAGGCACACGAGTCGCACGAGTCACAGAGC
GTCAGCTGCGACAAGCCGCAAGGCATCGTCGAGATTGGACGCGAGGCGGA
GCTGTTGGACAAAACTGCGCAATCGGAGGAGCCCAAGATTGCGGCTGCAA
GCCAAGCCGGTCGGCCAGGATGTGGCGGCGATGTGGCCACCTCGGCCGTG
GAGCGCAGCAGTGGCGATGTCTTCATTGTCTGAGGACGTTAGCACTATCG
GGGTCATTGTATAGAATTGAACTAAGCTAAATGATATTTATTTATTACAC
AACATATTGTCTCAGTCTCAATGTTGAATTTATAACTACTACTCGAACTT
CCCCCCTATTTTTTTGTATACCCATACATATTCTGTAGTTGGTTGACTTG
TGGTACACAGAAACCTAGGATTTATGATCGAGCGACAATATACTATGAGA
TACATCACTACTAATTGAAATAATACCTCATTTTCGTTTATTTTAAGCCC
AAAAATGACAAAATATATATCTACGAATACGAAAAAAGCGCACACAAATG
AAATATCCAAATTAATTAATTTAATAGCAATAAATGCAAACGTTTCCCTG
CAACTTTTTTGTGGCACAAGTCAATCGCACGCTAAACTACACAAAATTGG
CCAAATGATAATATTATTTAATATTTATAGATACCTACGCTTAAGTTACC
CTTGCCGTATTTACCCACCACTCAGTGTATACATATGTATAACCATGTAA
AGCTAAACCGTTCCAAGTGCAATTTGTAATCCCAAAAAAGGCAGCGGAGA
TCCGTAATGAAATCCGTAATACGTGTGGCAATAAAGAACTTAAGAAATCT
GAAAAAAAAAAAAAAAAAAAA

LD19061.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11178-RB 3280 CG11178-RB 194..3195 1..3002 15010 100 Plus
CG11178-RA 3363 CG11178-RA 277..3278 1..3002 15010 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13496922..13498210 1..1289 6445 100 Plus
chrX 22417052 chrX 13499137..13500265 1873..3001 5645 100 Plus
chrX 22417052 chrX 13498419..13498820 1290..1691 2010 100 Plus
chrX 22417052 chrX 13498885..13499068 1689..1872 920 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:06:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13606186..13607474 1..1289 6445 100 Plus
X 23542271 X 13608401..13609530 1873..3002 5650 100 Plus
X 23542271 X 13607683..13608084 1290..1691 2010 100 Plus
X 23542271 X 13608149..13608332 1689..1872 920 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13614284..13615572 1..1289 6445 100 Plus
X 23527363 X 13616499..13617628 1873..3002 5650 100 Plus
X 23527363 X 13615781..13616182 1290..1691 2010 100 Plus
X 23527363 X 13616247..13616430 1689..1872 920 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:13:41 has no hits.

LD19061.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:14:19 Download gff for LD19061.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13498888..13499068 1692..1872 100 -> Plus
chrX 13496922..13498210 1..1289 100 -> Plus
chrX 13498419..13498820 1290..1691 100 -> Plus
chrX 13499137..13500265 1873..3001 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:53:38 Download gff for LD19061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11178-RB 1..2124 260..2383 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:32 Download gff for LD19061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11178-RB 1..2124 260..2383 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:08:18 Download gff for LD19061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11178-RB 1..2124 260..2383 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:20 Download gff for LD19061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11178-RB 1..2124 260..2383 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:32:21 Download gff for LD19061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11178-RB 1..2124 260..2383 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:28:46 Download gff for LD19061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11178-RB 16..3016 1..3001 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:32 Download gff for LD19061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11178-RB 16..3016 1..3001 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:18 Download gff for LD19061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11178-RB 43..3043 1..3001 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:21 Download gff for LD19061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11178-RB 16..3016 1..3001 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:32:21 Download gff for LD19061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11178-RB 43..3043 1..3001 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:14:19 Download gff for LD19061.complete
Subject Subject Range Query Range Percent Splice Strand
X 13608152..13608332 1692..1872 100 -> Plus
X 13607683..13608084 1290..1691 100 -> Plus
X 13606186..13607474 1..1289 100 -> Plus
X 13608401..13609529 1873..3001 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:14:19 Download gff for LD19061.complete
Subject Subject Range Query Range Percent Splice Strand
X 13608152..13608332 1692..1872 100 -> Plus
X 13607683..13608084 1290..1691 100 -> Plus
X 13606186..13607474 1..1289 100 -> Plus
X 13608401..13609529 1873..3001 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:14:19 Download gff for LD19061.complete
Subject Subject Range Query Range Percent Splice Strand
X 13608152..13608332 1692..1872 100 -> Plus
X 13607683..13608084 1290..1691 100 -> Plus
X 13606186..13607474 1..1289 100 -> Plus
X 13608401..13609529 1873..3001 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:18 Download gff for LD19061.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13501716..13502117 1290..1691 100 -> Plus
arm_X 13502185..13502365 1692..1872 100 -> Plus
arm_X 13500219..13501507 1..1289 100 -> Plus
arm_X 13502434..13503562 1873..3001 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:51:03 Download gff for LD19061.complete
Subject Subject Range Query Range Percent Splice Strand
X 13616250..13616430 1692..1872 100 -> Plus
X 13614284..13615572 1..1289 100 -> Plus
X 13615781..13616182 1290..1691 100 -> Plus
X 13616499..13617627 1873..3001 100   Plus

LD19061.pep Sequence

Translation from 259 to 2382

> LD19061.pep
MASEPENKPPILHILVVGFHHKLGCQVEFSHPPLISGSTGRNECPSGWKY
LPTLALPDGSHNFAEDTVFFNLPSLYEPAESIYGVSCYRQIRVEKLKIRT
ADLTRSTVQKSVCILARLPIYGYIEVKLALIADAFFDQGDFSGTELLAKA
YQQLNACLQDDESRRPLRHFHVGLSLREIVLHWRHKTLMLFKLMLLQRRV
VCFGSPVRQMCVLILGMASLVPRLLEKGFQEVACVRTSRPLSPMPDFTDS
LQREAQAEAEAELEAVASVAAATDEQKLTPESATAVEGEAEELALVSSAA
SAGEEQVSGDDTSTRSTPNSQSQDSSNGRNSSLTREASVDTLASNLAALC
AVNPDEYRAPVSIFASGNLCLPYLSLPYMDLLSDPMVLSYVIGTSNVLFQ
QKRQLADVLVDIEAANLDAHDPELRRQLVLSTEDLRYMDYIMKHVQSPKE
DAEGSEYWIREQFQGYILALLRTAVAPDATPKDNDHFNAHFMGAFKRTQC
FQEWYDVRPEPEFFEALPAGHPFAGTLSVADMKLKLAQTMQNSESGRKIN
QAVNTTSRAVGGAISQAKGAFSSWWSSITTAPPNATNAGPATSSSNGQEG
DVSEGAAAQEISVTFQNHKDVEDLDVAGVSIHLAGQEEAHESHESQSVSC
DKPQGIVEIGREAELLDKTAQSEEPKIAAASQAGRPGCGGDVATSAVERS
SGDVFIV*

LD19061.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22578-PA 700 GF22578-PA 1..700 1..707 3138 85.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17795-PA 705 GG17795-PA 1..705 1..707 3663 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12502-PA 750 GH12502-PA 1..750 1..707 2864 76.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11178-PC 707 CG11178-PC 1..707 1..707 3624 100 Plus
CG11178-PB 707 CG11178-PB 1..707 1..707 3624 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14855-PA 739 GI14855-PA 1..739 1..707 2823 74.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20243-PA 726 GL20243-PA 5..726 2..707 3049 83.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10819-PA 728 GA10819-PA 5..728 2..707 3047 82.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17619-PA 313 GM17619-PA 1..311 1..343 1568 88.6 Plus
Dsec\GM17620-PA 160 GM17620-PA 1..160 540..707 798 92.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24811-PA 699 GD24811-PA 1..699 1..707 3671 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19515-PA 741 GJ19515-PA 1..741 1..707 2868 77.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19887-PA 712 GK19887-PA 1..712 1..707 2713 75.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17091-PA 707 GE17091-PA 1..707 1..707 3645 96.6 Plus

LD19061.hyp Sequence

Translation from 259 to 2382

> LD19061.hyp
MASEPENKPPILHILVVGFHHKLGCQVEFSHPPLISGSTGRNECPSGWKY
LPTLALPDGSHNFAEDTVFFNLPSLYEPAESIYGVSCYRQIRVEKLKIRT
ADLTRSTVQKSVCILARLPIYGYIEVKLALIADAFFDQGDFSGTELLAKA
YQQLNACLQDDESRRPLRHFHVGLSLREIVLHWRHKTLMLFKLMLLQRRV
VCFGSPVRQMCVLILGMASLVPRLLEKGFQEVACVRTSRPLSPMPDFTDS
LQREAQAEAEAELEAVASVAAATDEQKLTPESATAVEGEAEELALVSSAA
SAGEEQVSGDDTSTRSTPNSQSQDSSNGRNSSLTREASVDTLASNLAALC
AVNPDEYRAPVSIFASGNLCLPYLSLPYMDLLSDPMVLSYVIGTSNVLFQ
QKRQLADVLVDIEAANLDAHDPELRRQLVLSTEDLRYMDYIMKHVQSPKE
DAEGSEYWIREQFQGYILALLRTAVAPDATPKDNDHFNAHFMGAFKRTQC
FQEWYDVRPEPEFFEALPAGHPFAGTLSVADMKLKLAQTMQNSESGRKIN
QAVNTTSRAVGGAISQAKGAFSSWWSSITTAPPNATNAGPATSSSNGQEG
DVSEGAAAQEISVTFQNHKDVEDLDVAGVSIHLAGQEEAHESHESQSVSC
DKPQGIVEIGREAELLDKTAQSEEPKIAAASQAGRPGCGGDVATSAVERS
SGDVFIV*

LD19061.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11178-PC 707 CG11178-PC 1..707 1..707 3624 100 Plus
CG11178-PB 707 CG11178-PB 1..707 1..707 3624 100 Plus