Clone LD19162 Report

Search the DGRC for LD19162

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:191
Well:62
Vector:pBS SK-
Associated Gene/TranscriptEnt1-RA
Protein status:LD19162.pep: gold
Preliminary Size:2093
Sequenced Size:1985

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11907 2001-01-01 Release 2 assignment
CG11907 2001-10-10 Blastp of sequenced clone
CG11907 2003-01-01 Sim4 clustering to Release 3
Ent1 2008-04-29 Release 5.5 accounting
Ent1 2008-08-15 Release 5.9 accounting
Ent1 2008-12-18 5.12 accounting

Clone Sequence Records

LD19162.complete Sequence

1985 bp (1985 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061261

> LD19162.complete
CAAATTCGTTTTTATGTTACGCAGTTCGTCCGTGCTAAATGATACACATG
AAAGTAAATTGCATCAGATTAAGTTACATCGAATACTTCTCCACAATTAC
AGATGTGAATAATCCGCCAGAGGTGTTGTAAATTTATGAATACCAAGGGC
TGCGTACAAAACAGTAGTGCAATTCAGTGGCAATGCCAGGCACCAGTGAC
ACACGACGACTGGTGGACGCCCTGGACGAGGATGACGAGATTCTGGGCAC
GGAGGGCAGCTTCGTTCCCGCTTTTCGTCCGCAGGACCACCATGCGGATG
AGCAATGTCTCATGGAACGCCAGCAGGACGAGGTAGTTTTGGTGTCCAAC
GAACCCGAGAGTGGACGACTCTTCACCTACCTCGTGTTCTACCTGTTGGG
CATTGGTACCATGACCCCGTGGAATTTCTTTGTGACTGCGGAAGATTACT
GGAAGTACAAGTTCCGGAATGCATCGATTAATAACACAGACCTGGAGGAA
GAGCTCACCCCGTTGCAGAAGAGTTTTACCTGCGACTTGGCTCTCACGGC
CACTATTTCTGGGACTACATTTCTGCTGCTAAACGCCATTTTCGGACACC
ATGTGTCCCTGCGCACCAAGATGTTAGGAACGCTGTGGATGATCCTCATC
CTTTTCGGGGTTACAACTGGCTTCGTGGAGATCAACACAGACACGTGGCA
GGAACAGTTTTTCCTAATCACTCTCATCATTGTAGTGCTGCTAAATATAT
CTGCGGCTACAATGTCGGGAGCCCTCTACGGAGTCGCTGGTCTATTTCCC
TCCGAGTTTATCACCGCTGTGGTTAGCGGACAGGCTCTTGGTGGTATCCT
CACAGCCCTGGCCTTCATTCTTGTGCTTGCATTCGACACGGGTCCCAATA
CCACTGCATTCATCTTCTTCATTGTGGGAGGAGTGCTCATCCTGCTTTGC
ATTGTGTGCTACGTAATCCTGGCTCGAAAGCCTTTCTTTAGGTATTATCT
CGAAGGTGGCGACAAGTACAAGGTCATCCGGGCAGTGCCCTCGCACAACC
GGAATGGAAGCGCTGAGGGCTTGCCGCTTGAGCCTATTTTGCGTCAGGTC
ATGTCGAAGATCTATCTGCATGCCATTTCCCTAGCGCTCCTCTATACCAC
GACCCTGTCTGTCTATCCGGCAGTTACAGTGCTTATGCAGTCAGAGTACG
GCCACAGCGTGTGGACAGATGTTTATTTTCTGCCCGTCGTGAACTACCTG
ATATTTAACTGCGGTGACTATTTTGGTCGTCTGTTTGCTGGCTGGATGGA
GCGACCATTAAACCAGAACACTTCGCTACTATTTATTGTAGTGCGCATGG
CGTTTGTTCCGTTATTTCTATGTTCAAACTCCAGCGAACACAGCTTTCTG
CCAGTTTTGGTAAAACACGACTATACTTTCATAGCGATGATGGTAATGTT
TGCCTTGTCCAACGGATATTTTACGAACATACTACTTATAATGGCGCCTA
AACGCGTAAAGCAGCATGAAAAGGAGCTGGCTTCGTCGATAATGGCAGCT
GCTTTGAGCTGTGGCATGGCTGTGGGATCACTGCTCAGCCTTGTATTTGT
TCAAATGCTTTGAATTAGCCAACAAAATAAGTCTGCCCATAGTGCCTTCG
GGAGTTTCAGAATCTTAAGCATTATAGTGATAGTTAACTTGATATTGGTT
GCTCTTCCAACTACTTAGGGGGTGTTAATGTTTTTACTTTTGTTACAAGT
CTACTGACTGAAATTATTTACACAGCGAAATTTTATTTAAATTTTTTCCA
AAACGAAGTGTTATTTAATATTTTGAGTTATTTTGATGCTGTGTGTTGTT
TTCCAAATTTTACTCATTTTTTATTTTAACAAGTTTACTATATCGGGATG
CCTAGATTTAAGGTTTAAAGTTTTCATTATATACTAGGAATAAGACGATA
TTAAAAAAATTAGAACAAAAAAAAAAAAAAAAAAA

LD19162.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
Ent1.b 2274 Ent1.b 303..2270 1..1968 9840 100 Plus
Ent1-RA 2107 Ent1-RA 136..2103 1..1968 9840 100 Plus
Ent1-RB 1958 Ent1-RB 89..1954 103..1968 9330 100 Plus
Ent1-RB 1958 Ent1-RB 36..88 1..53 265 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 355584..356335 1966..1215 3760 100 Minus
chr2L 23010047 chr2L 356386..356856 1218..748 2355 100 Minus
chr2L 23010047 chr2L 357442..357887 446..1 2230 100 Minus
chr2L 23010047 chr2L 356910..357210 747..447 1505 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:06:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 355563..356316 1968..1215 3770 100 Minus
2L 23513712 2L 356367..356837 1218..748 2355 100 Minus
2L 23513712 2L 357423..357868 446..1 2230 100 Minus
2L 23513712 2L 356891..357191 747..447 1505 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 355563..356316 1968..1215 3770 100 Minus
2L 23513712 2L 356367..356837 1218..748 2355 100 Minus
2L 23513712 2L 357423..357868 446..1 2230 100 Minus
2L 23513712 2L 356891..357191 747..447 1505 100 Minus
3L 28103327 3L 20026930..20026976 1838..1792 220 97.8 Minus
Blast to na_te.dros performed 2019-03-15 21:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ddip\Bari1 1677 Ddip\Bari1 DDBARI1 1676bp Derived from Y13852. 1357..1436 1837..1761 132 65 Minus

LD19162.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:50:23 Download gff for LD19162.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 355584..356331 1219..1966 100 <- Minus
chr2L 356386..356856 748..1218 100 <- Minus
chr2L 356910..357210 447..747 100 <- Minus
chr2L 357442..357887 1..446 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:53:46 Download gff for LD19162.complete
Subject Subject Range Query Range Percent Splice Strand
Ent1-RB 1..1431 183..1613 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:45:36 Download gff for LD19162.complete
Subject Subject Range Query Range Percent Splice Strand
Ent1-RB 1..1431 183..1613 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:59:31 Download gff for LD19162.complete
Subject Subject Range Query Range Percent Splice Strand
Ent1-RA 1..1431 183..1613 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:14:24 Download gff for LD19162.complete
Subject Subject Range Query Range Percent Splice Strand
Ent1-RB 1..1431 183..1613 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:03:53 Download gff for LD19162.complete
Subject Subject Range Query Range Percent Splice Strand
Ent1-RA 1..1431 183..1613 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:28:51 Download gff for LD19162.complete
Subject Subject Range Query Range Percent Splice Strand
Ent1-RA 1..1966 1..1966 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:45:36 Download gff for LD19162.complete
Subject Subject Range Query Range Percent Splice Strand
Ent1-RA 1..1966 1..1966 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:59:31 Download gff for LD19162.complete
Subject Subject Range Query Range Percent Splice Strand
Ent1-RA 7..1972 1..1966 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:14:24 Download gff for LD19162.complete
Subject Subject Range Query Range Percent Splice Strand
Ent1-RA 1..1966 1..1966 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:53 Download gff for LD19162.complete
Subject Subject Range Query Range Percent Splice Strand
Ent1-RA 7..1972 1..1966 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:23 Download gff for LD19162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 355565..356312 1219..1966 100 <- Minus
2L 356367..356837 748..1218 100 <- Minus
2L 356891..357191 447..747 100 <- Minus
2L 357423..357868 1..446 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:23 Download gff for LD19162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 355565..356312 1219..1966 100 <- Minus
2L 356367..356837 748..1218 100 <- Minus
2L 356891..357191 447..747 100 <- Minus
2L 357423..357868 1..446 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:23 Download gff for LD19162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 355565..356312 1219..1966 100 <- Minus
2L 356367..356837 748..1218 100 <- Minus
2L 356891..357191 447..747 100 <- Minus
2L 357423..357868 1..446 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:59:31 Download gff for LD19162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 355565..356312 1219..1966 100 <- Minus
arm_2L 356367..356837 748..1218 100 <- Minus
arm_2L 356891..357191 447..747 100 <- Minus
arm_2L 357423..357868 1..446 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:51:07 Download gff for LD19162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 355565..356312 1219..1966 100 <- Minus
2L 356367..356837 748..1218 100 <- Minus
2L 356891..357191 447..747 100 <- Minus
2L 357423..357868 1..446 100   Minus

LD19162.pep Sequence

Translation from 182 to 1612

> LD19162.pep
MPGTSDTRRLVDALDEDDEILGTEGSFVPAFRPQDHHADEQCLMERQQDE
VVLVSNEPESGRLFTYLVFYLLGIGTMTPWNFFVTAEDYWKYKFRNASIN
NTDLEEELTPLQKSFTCDLALTATISGTTFLLLNAIFGHHVSLRTKMLGT
LWMILILFGVTTGFVEINTDTWQEQFFLITLIIVVLLNISAATMSGALYG
VAGLFPSEFITAVVSGQALGGILTALAFILVLAFDTGPNTTAFIFFIVGG
VLILLCIVCYVILARKPFFRYYLEGGDKYKVIRAVPSHNRNGSAEGLPLE
PILRQVMSKIYLHAISLALLYTTTLSVYPAVTVLMQSEYGHSVWTDVYFL
PVVNYLIFNCGDYFGRLFAGWMERPLNQNTSLLFIVVRMAFVPLFLCSNS
SEHSFLPVLVKHDYTFIAMMVMFALSNGYFTNILLIMAPKRVKQHEKELA
SSIMAAALSCGMAVGSLLSLVFVQML*

LD19162.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24827-PA 481 GF24827-PA 1..481 1..476 2181 85 Plus
Dana\GF14172-PA 455 GF14172-PA 50..447 58..469 364 26.2 Plus
Dana\GF23579-PA 673 GF23579-PA 45..272 55..292 173 22.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24654-PA 476 GG24654-PA 1..476 1..476 2392 93.7 Plus
Dere\GG10421-PA 457 GG10421-PA 51..450 58..469 336 25.8 Plus
Dere\GG15604-PA 668 GG15604-PA 45..272 55..292 171 22.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11145-PA 492 GH11145-PA 30..492 24..476 1788 72.8 Plus
Dgri\GH13844-PA 458 GH13844-PA 6..449 15..469 312 24 Plus
Dgri\GH17074-PA 660 GH17074-PA 362..523 305..476 170 29.1 Plus
Dgri\GH17074-PA 660 GH17074-PA 38..245 55..278 158 21.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
Ent1-PC 476 CG11907-PC 1..476 1..476 2447 100 Plus
Ent1-PB 476 CG11907-PB 1..476 1..476 2447 100 Plus
Ent1-PA 476 CG11907-PA 1..476 1..476 2447 100 Plus
Ent2-PA 458 CG31911-PA 51..450 58..469 372 25.2 Plus
Ent2-PB 458 CG31911-PB 51..450 58..469 372 25.2 Plus
Ent3-PB 667 CG11010-PB 48..271 58..292 189 23.8 Plus
Ent3-PC 668 CG11010-PC 48..272 58..292 188 23.7 Plus
Ent3-PA 668 CG11010-PA 48..272 58..292 188 23.7 Plus
Ent3-PB 667 CG11010-PB 367..528 305..476 177 29.7 Plus
Ent3-PC 668 CG11010-PC 368..529 305..476 177 29.7 Plus
Ent3-PA 668 CG11010-PA 368..529 305..476 177 29.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17852-PA 464 GI17852-PA 11..464 27..476 1802 75.6 Plus
Dmoj\GI20368-PA 454 GI20368-PA 6..454 22..475 240 22.9 Plus
Dmoj\GI11668-PA 657 GI11668-PA 362..523 305..476 165 28.4 Plus
Dmoj\GI11668-PA 657 GI11668-PA 38..245 55..278 155 21.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19271-PA 482 GL19271-PA 1..482 1..476 2076 79.7 Plus
Dper\GL25678-PA 455 GL25678-PA 49..448 58..469 306 24.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11273-PA 482 GA11273-PA 1..482 1..476 2083 79.9 Plus
Dpse\GA16558-PA 455 GA16558-PA 49..448 58..469 305 24.3 Plus
Dpse\GA10708-PA 678 GA10708-PA 11..268 12..292 175 23.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16673-PA 476 GM16673-PA 1..476 1..476 2471 97.7 Plus
Dsec\GM16179-PA 458 GM16179-PA 51..450 58..469 336 26.3 Plus
Dsec\GM25377-PA 668 GM25377-PA 48..272 58..292 171 23.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22962-PA 476 GD22962-PA 1..476 1..476 2472 97.7 Plus
Dsim\GD23420-PA 458 GD23420-PA 51..450 58..469 340 26.7 Plus
Dsim\GD14411-PA 668 GD14411-PA 48..272 58..292 171 23.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17347-PA 488 GJ17347-PA 27..488 20..476 1831 74.7 Plus
Dvir\GJ13720-PA 456 GJ13720-PA 6..447 22..469 270 23 Plus
Dvir\GJ11346-PA 657 GJ11346-PA 362..523 305..476 168 28.5 Plus
Dvir\GJ11346-PA 657 GJ11346-PA 38..245 55..278 154 21.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23885-PA 482 GK23885-PA 1..482 1..476 1891 73.9 Plus
Dwil\GK15325-PA 453 GK15325-PA 41..446 52..469 281 24.5 Plus
Dwil\GK16831-PA 752 GK16831-PA 101..308 55..278 165 21.9 Plus
Dwil\GK16831-PA 752 GK16831-PA 430..591 305..476 165 29.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16173-PA 476 GE16173-PA 1..476 1..476 2409 95 Plus
Dyak\GE13988-PA 458 GE13988-PA 51..450 58..469 335 26.2 Plus
Dyak\GE21931-PA 668 GE21931-PA 45..272 55..292 171 23 Plus

LD19162.hyp Sequence

Translation from 182 to 1612

> LD19162.hyp
MPGTSDTRRLVDALDEDDEILGTEGSFVPAFRPQDHHADEQCLMERQQDE
VVLVSNEPESGRLFTYLVFYLLGIGTMTPWNFFVTAEDYWKYKFRNASIN
NTDLEEELTPLQKSFTCDLALTATISGTTFLLLNAIFGHHVSLRTKMLGT
LWMILILFGVTTGFVEINTDTWQEQFFLITLIIVVLLNISAATMSGALYG
VAGLFPSEFITAVVSGQALGGILTALAFILVLAFDTGPNTTAFIFFIVGG
VLILLCIVCYVILARKPFFRYYLEGGDKYKVIRAVPSHNRNGSAEGLPLE
PILRQVMSKIYLHAISLALLYTTTLSVYPAVTVLMQSEYGHSVWTDVYFL
PVVNYLIFNCGDYFGRLFAGWMERPLNQNTSLLFIVVRMAFVPLFLCSNS
SEHSFLPVLVKHDYTFIAMMVMFALSNGYFTNILLIMAPKRVKQHEKELA
SSIMAAALSCGMAVGSLLSLVFVQML*

LD19162.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
Ent1-PC 476 CG11907-PC 1..476 1..476 2447 100 Plus
Ent1-PB 476 CG11907-PB 1..476 1..476 2447 100 Plus
Ent1-PA 476 CG11907-PA 1..476 1..476 2447 100 Plus
Ent2-PA 458 CG31911-PA 51..450 58..469 372 25.2 Plus
Ent2-PB 458 CG31911-PB 51..450 58..469 372 25.2 Plus